RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 FER1L6Q2WGJ9 1857 aa14.48□□□□□ -0.09
SHMT2-233ENST00000557529 ECM29Q5VYK3 1845 aa14.48□□□□□ -0.09
SHMT2-233ENST00000557529 SPDYE2BA6NHP3 402 aa14.47□□□□□ -0.09
SHMT2-233ENST00000557529 PRPF3O43395 683 aaKnown RBP14.47□□□□□ -0.09
SHMT2-233ENST00000557529 SPDYE6P0CI01 402 aa14.47□□□□□ -0.09
SHMT2-233ENST00000557529 CXCL9Q07325 125 aa14.47□□□□□ -0.09
SHMT2-233ENST00000557529 DLGAP5Q15398 846 aa14.47□□□□□ -0.09
SHMT2-233ENST00000557529 KRT40Q6A162 431 aa14.47□□□□□ -0.09
SHMT2-233ENST00000557529 MTMR14Q8NCE2 650 aa14.47□□□□□ -0.09
SHMT2-233ENST00000557529 GPT2Q8TD30 523 aa14.47□□□□□ -0.09
SHMT2-233ENST00000557529 CCDC17Q96LX7 622 aa14.47□□□□□ -0.09
SHMT2-233ENST00000557529 TDRD3Q9H7E2 651 aaKnown RBP14.47□□□□□ -0.09
SHMT2-233ENST00000557529 RBM27Q9P2N5 1060 aaKnown RBP14.47□□□□□ -0.09
SHMT2-233ENST00000557529 PI4KBQ9UBF8 816 aa14.47□□□□□ -0.09
SHMT2-233ENST00000557529 FAM198AQ9UFP1 575 aa14.47□□□□□ -0.09
SHMT2-233ENST00000557529 STX8Q9UNK0 236 aa14.47□□□□□ -0.09
SHMT2-233ENST00000557529 PCDHAC2Q9Y5I4 1007 aa14.47□□□□□ -0.09
SHMT2-233ENST00000557529 TOP1P11387 765 aaKnown RBP14.47□□□□□ -0.09
SHMT2-233ENST00000557529 XBP1P17861 261 aa14.47□□□□□ -0.09
SHMT2-233ENST00000557529 NOVP48745 357 aa14.47□□□□□ -0.09
SHMT2-233ENST00000557529 CACNB3P54284 484 aa14.47□□□□□ -0.09
SHMT2-233ENST00000557529 KIF23Q02241 960 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-233ENST00000557529 FUT2Q10981 343 aa14.47□□□□□ -0.09
SHMT2-233ENST00000557529 GRM4Q14833 912 aa14.47□□□□□ -0.09
SHMT2-233ENST00000557529 SAFBQ15424 915 aaKnown RBP eCLIP14.47□□□□□ -0.09
SHMT2-233ENST00000557529 OTUD7BQ6GQQ9 843 aa14.47□□□□□ -0.09
SHMT2-233ENST00000557529 FAM173BQ6P4H8 233 aa14.47□□□□□ -0.09
SHMT2-233ENST00000557529 FOXP4Q8IVH2 680 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-233ENST00000557529 SYAP1Q96A49 352 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-233ENST00000557529 PRMT6Q96LA8 375 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-233ENST00000557529 SPATA32Q96LK8 384 aa14.47□□□□□ -0.09
SHMT2-233ENST00000557529 TMEM47Q9BQJ4 181 aa14.47□□□□□ -0.09
SHMT2-233ENST00000557529 LZTS2Q9BRK4 669 aa14.47□□□□□ -0.09
SHMT2-233ENST00000557529 TRIM34Q9BYJ4 488 aa14.47□□□□□ -0.09
SHMT2-233ENST00000557529 GZF1Q9H116 711 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-233ENST00000557529 ATRNL1Q5VV63 1379 aa14.46□□□□□ -0.09
SHMT2-233ENST00000557529 PLEKHA8P1O95397 391 aa14.46□□□□□ -0.1
SHMT2-233ENST00000557529 RPS12P25398 132 aaKnown RBP14.46□□□□□ -0.1
SHMT2-233ENST00000557529 SHMT1P34896 483 aa14.46□□□□□ -0.1
SHMT2-233ENST00000557529 TCP10Q12799 353 aa14.46□□□□□ -0.1
SHMT2-233ENST00000557529 FKBP1CQ5VVH2 108 aa14.46□□□□□ -0.1
SHMT2-233ENST00000557529 ZSCAN29Q8IWY8 852 aaPredicted RBP14.46□□□□□ -0.1
SHMT2-233ENST00000557529 AIFM3Q96NN9 605 aa14.46□□□□□ -0.1
SHMT2-233ENST00000557529 TFIP11Q9UBB9 837 aaKnown RBP14.46□□□□□ -0.1
SHMT2-233ENST00000557529 IGKV6D-41A0A0C4DH26 115 aa14.45□□□□□ -0.1
SHMT2-233ENST00000557529 GADD45BO75293 160 aaPredicted RBP14.45□□□□□ -0.1
SHMT2-233ENST00000557529 GNL2Q13823 731 aaKnown RBP14.45□□□□□ -0.1
SHMT2-233ENST00000557529 CAVIN1Q6NZI2 390 aaKnown RBP14.45□□□□□ -0.1
SHMT2-233ENST00000557529 ZFPM1Q8IX07 1006 aa14.45□□□□□ -0.1
SHMT2-233ENST00000557529 CMTR1Q8N1G2 835 aaKnown RBP14.45□□□□□ -0.1
SHMT2-233ENST00000557529 CCDC82Q8N4S0 544 aa14.45□□□□□ -0.1
SHMT2-233ENST00000557529 LEO1Q8WVC0 666 aaPredicted RBP14.45□□□□□ -0.1
SHMT2-233ENST00000557529 CEP95Q96GE4 821 aa14.45□□□□□ -0.1
SHMT2-233ENST00000557529 MTMR4Q9NYA4 1195 aa14.45□□□□□ -0.1
SHMT2-233ENST00000557529 ZBTB12Q9Y330 459 aaPredicted RBP14.45□□□□□ -0.1
SHMT2-233ENST00000557529 DDTLA6NHG4 134 aaPredicted RBP14.44□□□□□ -0.1
SHMT2-233ENST00000557529 MYO1BO43795 1136 aa14.44□□□□□ -0.1
SHMT2-233ENST00000557529 AKR1B1P15121 316 aa14.44□□□□□ -0.1
SHMT2-233ENST00000557529 GUCY1A2P33402 732 aa14.44□□□□□ -0.1
SHMT2-233ENST00000557529 SPDYE2Q495Y8 402 aa14.44□□□□□ -0.1
SHMT2-233ENST00000557529 METTL16Q86W50 562 aaKnown RBP14.44□□□□□ -0.1
SHMT2-233ENST00000557529 SRBD1Q8N5C6 995 aaKnown RBP14.44□□□□□ -0.1
SHMT2-233ENST00000557529 NLGN2Q8NFZ4 835 aa14.44□□□□□ -0.1
SHMT2-233ENST00000557529 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.44□□□□□ -0.1
SHMT2-233ENST00000557529 GJB4Q9NTQ9 266 aa14.44□□□□□ -0.1
SHMT2-233ENST00000557529 ZNF70Q9UC06 446 aaPredicted RBP14.44□□□□□ -0.1
SHMT2-233ENST00000557529 RCOR1Q9UKL0 485 aa14.44□□□□□ -0.1
SHMT2-233ENST00000557529 ISY1Q9ULR0 285 aaKnown RBP14.44□□□□□ -0.1
SHMT2-233ENST00000557529 V9GY48 417 aaPredicted RBP14.44□□□□□ -0.1
SHMT2-233ENST00000557529 CNTNAP5Q8WYK1 1306 aa14.44□□□□□ -0.1
SHMT2-233ENST00000557529 TCHHQ07283 1943 aa14.43□□□□□ -0.1
SHMT2-233ENST00000557529 GOLGA6L4A6NEF3 574 aa14.43□□□□□ -0.1
SHMT2-233ENST00000557529 TTLL1O95922 423 aa14.43□□□□□ -0.1
SHMT2-233ENST00000557529 MMP1P03956 469 aa14.43□□□□□ -0.1
SHMT2-233ENST00000557529 U2AF2P26368 475 aaKnown RBP eCLIP14.43□□□□□ -0.14e-8■■□□□ 14.1
SHMT2-233ENST00000557529 EIF6P56537 245 aaKnown RBP14.43□□□□□ -0.1
SHMT2-233ENST00000557529 PKN1Q16512 942 aa14.43□□□□□ -0.1
SHMT2-233ENST00000557529 MYSM1Q5VVJ2 828 aa14.43□□□□□ -0.1
SHMT2-233ENST00000557529 SH3BP5LQ7L8J4 393 aa14.43□□□□□ -0.1
SHMT2-233ENST00000557529 FOXP1Q9H334 677 aaPredicted RBP14.43□□□□□ -0.1
SHMT2-233ENST00000557529 RTEL1Q9NZ71 1219 aa14.43□□□□□ -0.1
SHMT2-233ENST00000557529 ARFGEF1Q9Y6D6 1849 aa14.43□□□□□ -0.1
SHMT2-233ENST00000557529 PALM3A6NDB9 673 aaPredicted RBP14.42□□□□□ -0.1
SHMT2-233ENST00000557529 KIF28PB7ZC32 967 aa14.42□□□□□ -0.1
SHMT2-233ENST00000557529 PARP1P09874 1014 aaKnown RBP14.42□□□□□ -0.1
SHMT2-233ENST00000557529 SMARCA1P28370 1054 aa14.42□□□□□ -0.1
SHMT2-233ENST00000557529 CERKLQ49MI3 558 aaPredicted RBP14.42□□□□□ -0.1
SHMT2-233ENST00000557529 TATDN1Q6P1N9 297 aa14.42□□□□□ -0.1
SHMT2-233ENST00000557529 FAM151AQ8WW52 585 aa14.42□□□□□ -0.1
SHMT2-233ENST00000557529 ZBED3Q96IU2 234 aaPredicted RBP14.42□□□□□ -0.1
SHMT2-233ENST00000557529 USP28Q96RU2 1077 aa14.42□□□□□ -0.1
SHMT2-233ENST00000557529 POLR3EQ9NVU0 708 aa14.42□□□□□ -0.1
SHMT2-233ENST00000557529 MAD2L2Q9UI95 211 aa14.42□□□□□ -0.1
SHMT2-233ENST00000557529 HERC5Q9UII4 1024 aaKnown RBP14.42□□□□□ -0.1
SHMT2-233ENST00000557529 UBE2Q2LH0YL09 131 aa14.41□□□□□ -0.1
SHMT2-233ENST00000557529 FZD9O00144 591 aa14.41□□□□□ -0.1
SHMT2-233ENST00000557529 MPHOSPH10O00566 681 aaKnown RBP14.41□□□□□ -0.1
SHMT2-233ENST00000557529 YEATS4O95619 227 aa14.41□□□□□ -0.1
SHMT2-233ENST00000557529 SCG2P13521 617 aa14.41□□□□□ -0.1
SHMT2-233ENST00000557529 ZNF280AP59817 542 aaPredicted RBP14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms