RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 NAPAP54920 295 aa13.76□□□□□ -0.21
CCDC88C-211ENST00000556726 ASIC1P78348 528 aa13.76□□□□□ -0.21
CCDC88C-211ENST00000556726 NBPF11Q86T75 865 aa13.76□□□□□ -0.21
CCDC88C-211ENST00000556726 CELF1Q92879 486 aaKnown RBP13.76□□□□□ -0.21
CCDC88C-211ENST00000556726 ARFGAP3Q9NP61 516 aa13.76□□□□□ -0.21
CCDC88C-211ENST00000556726 ARID5AQ03989 594 aa13.76□□□□□ -0.21
CCDC88C-211ENST00000556726 RAD51AP2Q09MP3 1159 aa13.76□□□□□ -0.21
CCDC88C-211ENST00000556726 INF2Q27J81 1249 aa13.76□□□□□ -0.21
CCDC88C-211ENST00000556726 PPP6R2O75170 966 aa13.75□□□□□ -0.21
CCDC88C-211ENST00000556726 CSF1RP07333 972 aa13.75□□□□□ -0.21
CCDC88C-211ENST00000556726 EVX2Q03828 476 aa13.75□□□□□ -0.21
CCDC88C-211ENST00000556726 RESP18Q5W5W9 173 aa13.75□□□□□ -0.21
CCDC88C-211ENST00000556726 RBM43Q6ZSC3 357 aaKnown RBP13.75□□□□□ -0.21
CCDC88C-211ENST00000556726 SLC44A5Q8NCS7 719 aa13.75□□□□□ -0.21
CCDC88C-211ENST00000556726 ACRBPQ8NEB7 543 aa13.75□□□□□ -0.21
CCDC88C-211ENST00000556726 ZCCHC17Q9NP64 241 aaKnown RBP13.75□□□□□ -0.21
CCDC88C-211ENST00000556726 KIF5BP33176 963 aa13.75□□□□□ -0.21
CCDC88C-211ENST00000556726 IL6STP40189 918 aaPredicted RBP13.75□□□□□ -0.21
CCDC88C-211ENST00000556726 FOXP4Q8IVH2 680 aaPredicted RBP13.75□□□□□ -0.21
CCDC88C-211ENST00000556726 JADE2Q9NQC1 790 aa13.75□□□□□ -0.21
CCDC88C-211ENST00000556726 SLIT1O75093 1534 aa13.75□□□□□ -0.21
CCDC88C-211ENST00000556726 RBL2Q08999 1139 aa13.75□□□□□ -0.21
CCDC88C-211ENST00000556726 ENAHQ8N8S7 591 aaPredicted RBP13.75□□□□□ -0.21
CCDC88C-211ENST00000556726 RABEP2Q9H5N1 569 aa13.75□□□□□ -0.21
CCDC88C-211ENST00000556726 SEC63Q9UGP8 760 aaKnown RBP13.75□□□□□ -0.21
CCDC88C-211ENST00000556726 MACROD2A1Z1Q3 448 aa13.74□□□□□ -0.21
CCDC88C-211ENST00000556726 PP2D1A8MPX8 630 aa13.74□□□□□ -0.21
CCDC88C-211ENST00000556726 ENC1O14682 589 aa13.74□□□□□ -0.21
CCDC88C-211ENST00000556726 FOXP2O15409 715 aa13.74□□□□□ -0.21
CCDC88C-211ENST00000556726 CCDC96Q2M329 555 aa13.74□□□□□ -0.21
CCDC88C-211ENST00000556726 MEX3CQ5U5Q3 659 aaKnown RBP13.74□□□□□ -0.21
CCDC88C-211ENST00000556726 SLC4A9Q96Q91 983 aa13.74□□□□□ -0.21
CCDC88C-211ENST00000556726 NBPF3Q9H094 633 aa13.74□□□□□ -0.21
CCDC88C-211ENST00000556726 RTL9Q8NET4 1388 aa13.74□□□□□ -0.21
CCDC88C-211ENST00000556726 USP17L3A6NCW0 530 aa13.74□□□□□ -0.21
CCDC88C-211ENST00000556726 USP17L4A6NCW7 530 aa13.74□□□□□ -0.21
CCDC88C-211ENST00000556726 CLCN6P51797 869 aa13.74□□□□□ -0.21
CCDC88C-211ENST00000556726 RPS8P62241 208 aaKnown RBP13.74□□□□□ -0.21
CCDC88C-211ENST00000556726 DTHD1Q6ZMT9 781 aa13.74□□□□□ -0.21
CCDC88C-211ENST00000556726 DYMQ7RTS9 669 aa13.74□□□□□ -0.21
CCDC88C-211ENST00000556726 USP17L1Q7RTZ2 530 aa13.74□□□□□ -0.21
CCDC88C-211ENST00000556726 VSTM4Q8IW00 320 aa13.74□□□□□ -0.21
CCDC88C-211ENST00000556726 WDR24Q96S15 920 aa13.74□□□□□ -0.21
CCDC88C-211ENST00000556726 TCP11L1Q9NUJ3 509 aa13.74□□□□□ -0.21
CCDC88C-211ENST00000556726 KLRK1P26718 216 aa13.73□□□□□ -0.21
CCDC88C-211ENST00000556726 RFC4P35249 363 aa13.73□□□□□ -0.21
CCDC88C-211ENST00000556726 EPS15P42566 896 aa13.73□□□□□ -0.21
CCDC88C-211ENST00000556726 TDRD12Q587J7 1177 aaKnown RBP13.73□□□□□ -0.21
CCDC88C-211ENST00000556726 UBA5Q9GZZ9 404 aa13.73□□□□□ -0.21
CCDC88C-211ENST00000556726 FBXO3Q9UK99 471 aa13.73□□□□□ -0.21
CCDC88C-211ENST00000556726 GDAQ9Y2T3 454 aa13.73□□□□□ -0.21
CCDC88C-211ENST00000556726 SETD1AO15047 1707 aaKnown RBP13.73□□□□□ -0.21
CCDC88C-211ENST00000556726 NELFBQ8WX92 580 aa13.73□□□□□ -0.21
CCDC88C-211ENST00000556726 LDHBP07195 334 aaKnown RBP13.73□□□□□ -0.21
CCDC88C-211ENST00000556726 TXKP42681 527 aa13.73□□□□□ -0.21
CCDC88C-211ENST00000556726 LIFRP42702 1097 aa13.73□□□□□ -0.21
CCDC88C-211ENST00000556726 MRPS25P82663 173 aaKnown RBP13.73□□□□□ -0.21
CCDC88C-211ENST00000556726 ADGRA1Q86SQ6 560 aa13.73□□□□□ -0.21
CCDC88C-211ENST00000556726 NEK11Q8NG66 645 aa13.73□□□□□ -0.21
CCDC88C-211ENST00000556726 MMRN2Q9H8L6 949 aa13.73□□□□□ -0.21
CCDC88C-211ENST00000556726 CCDC66A2RUB6 948 aa13.72□□□□□ -0.21
CCDC88C-211ENST00000556726 PARP10Q53GL7 1025 aa13.72□□□□□ -0.21
CCDC88C-211ENST00000556726 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.72□□□□□ -0.21
CCDC88C-211ENST00000556726 TMX4Q9H1E5 349 aaPredicted RBP13.72□□□□□ -0.21
CCDC88C-211ENST00000556726 FAM208AQ9UK61 1670 aaKnown RBP13.72□□□□□ -0.21
CCDC88C-211ENST00000556726 IKBKBO14920 756 aa13.72□□□□□ -0.21
CCDC88C-211ENST00000556726 PTPREP23469 700 aa13.72□□□□□ -0.21
CCDC88C-211ENST00000556726 TNNI2P48788 182 aa13.72□□□□□ -0.21
CCDC88C-211ENST00000556726 WWC2Q6AWC2 1192 aa13.72□□□□□ -0.21
CCDC88C-211ENST00000556726 AGXT2Q9BYV1 514 aa13.72□□□□□ -0.21
CCDC88C-211ENST00000556726 GPCPD1Q9NPB8 672 aa13.72□□□□□ -0.21
CCDC88C-211ENST00000556726 CTAGE9A4FU28 777 aa13.72□□□□□ -0.21
CCDC88C-211ENST00000556726 TRIM49BA6NDI0 452 aa13.72□□□□□ -0.21
CCDC88C-211ENST00000556726 MYO1BO43795 1136 aa13.72□□□□□ -0.21
CCDC88C-211ENST00000556726 ZMYND10O75800 440 aa13.72□□□□□ -0.21
CCDC88C-211ENST00000556726 RPGRQ92834 1020 aaKnown RBP13.72□□□□□ -0.21
CCDC88C-211ENST00000556726 SRRTQ9BXP5 876 aaKnown RBP13.72□□□□□ -0.21
CCDC88C-211ENST00000556726 CENPHQ9H3R5 247 aa13.72□□□□□ -0.21
CCDC88C-211ENST00000556726 TBC1D7Q9P0N9 293 aa13.72□□□□□ -0.21
CCDC88C-211ENST00000556726 XRN1Q8IZH2 1706 aaKnown RBP13.72□□□□□ -0.21
CCDC88C-211ENST00000556726 CPDO75976 1380 aa13.71□□□□□ -0.21
CCDC88C-211ENST00000556726 CCNT1O60563 726 aaKnown RBP13.71□□□□□ -0.21
CCDC88C-211ENST00000556726 TFRCP02786 760 aaKnown RBP13.71□□□□□ -0.21
CCDC88C-211ENST00000556726 RNASE9P60153 205 aaKnown RBP13.71□□□□□ -0.21
CCDC88C-211ENST00000556726 TRIM28Q13263 835 aaKnown RBP13.71□□□□□ -0.21
CCDC88C-211ENST00000556726 NCAPHQ15003 741 aa13.71□□□□□ -0.21
CCDC88C-211ENST00000556726 EARS2Q5JPH6 523 aaKnown RBP13.71□□□□□ -0.21
CCDC88C-211ENST00000556726 PNMA1Q8ND90 353 aa13.71□□□□□ -0.21
CCDC88C-211ENST00000556726 GOLGA1Q92805 767 aa13.71□□□□□ -0.21
CCDC88C-211ENST00000556726 OSBPL5Q9H0X9 879 aaPredicted RBP13.71□□□□□ -0.21
CCDC88C-211ENST00000556726 RGPD2P0DJD1 1756 aa13.71□□□□□ -0.21
CCDC88C-211ENST00000556726 NFAT5O94916 1531 aa13.71□□□□□ -0.21
CCDC88C-211ENST00000556726 SALL1Q9NSC2 1324 aa13.71□□□□□ -0.21
CCDC88C-211ENST00000556726 TOB1P50616 345 aaPredicted RBP13.71□□□□□ -0.21
CCDC88C-211ENST00000556726 CHMP4BP1P59074 171 aa13.71□□□□□ -0.21
CCDC88C-211ENST00000556726 MECOMQ03112 1051 aa13.71□□□□□ -0.21
CCDC88C-211ENST00000556726 PAK1Q13153 545 aa13.71□□□□□ -0.21
CCDC88C-211ENST00000556726 CUL4BQ13620 913 aa13.71□□□□□ -0.21
CCDC88C-211ENST00000556726 PTPROQ16827 1216 aa13.71□□□□□ -0.21
CCDC88C-211ENST00000556726 TPTE2Q6XPS3 522 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms