RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	SENP6	Q9GZR1	1112 aa	Predicted RBP	10.7	□□□□□ -0.7
SYNE2-222	ENST00000556725	AS3MT	Q9HBK9	375 aa		10.7	□□□□□ -0.7
SYNE2-222	ENST00000556725	FLRT1	Q9NZU1	646 aa		10.7	□□□□□ -0.7
SYNE2-222	ENST00000556725	HMG20B	Q9P0W2	317 aa		10.7	□□□□□ -0.7
SYNE2-222	ENST00000556725	NDUFB9	Q9Y6M9	179 aa		10.7	□□□□□ -0.7
SYNE2-222	ENST00000556725	SIPA1L1	O43166	1804 aa		10.7	□□□□□ -0.7
SYNE2-222	ENST00000556725	COL2A1	P02458	1487 aa	Predicted RBP	10.69	□□□□□ -0.7
SYNE2-222	ENST00000556725	LDHC	P07864	332 aa		10.69	□□□□□ -0.7
SYNE2-222	ENST00000556725	MAPK4	P31152	587 aa		10.69	□□□□□ -0.7
SYNE2-222	ENST00000556725	ERVK-9	P63128	1117 aa		10.69	□□□□□ -0.7
SYNE2-222	ENST00000556725	ERVK-24	P63145	666 aa		10.69	□□□□□ -0.7
SYNE2-222	ENST00000556725	TEX11	Q8IYF3	940 aa		10.69	□□□□□ -0.7
SYNE2-222	ENST00000556725	TRMT44	Q8IYL2	757 aa	Known RBP	10.69	□□□□□ -0.7
SYNE2-222	ENST00000556725	CDX2	Q99626	313 aa	Predicted RBP	10.69	□□□□□ -0.7
SYNE2-222	ENST00000556725	LBHD1	Q9BQE6	289 aa	Predicted RBP	10.69	□□□□□ -0.7
SYNE2-222	ENST00000556725	DNAJC18	Q9H819	358 aa		10.69	□□□□□ -0.7
SYNE2-222	ENST00000556725	COPRS	Q9NQ92	184 aa		10.69	□□□□□ -0.7
SYNE2-222	ENST00000556725	TMOD4	Q9NZQ9	345 aa		10.69	□□□□□ -0.7
SYNE2-222	ENST00000556725	FRMPD3	Q5JV73	1810 aa		10.69	□□□□□ -0.7
SYNE2-222	ENST00000556725	USP17L10	C9JJH3	530 aa		10.68	□□□□□ -0.7
SYNE2-222	ENST00000556725	GDF11	O95390	407 aa		10.68	□□□□□ -0.7
SYNE2-222	ENST00000556725	RGS2	P41220	211 aa		10.68	□□□□□ -0.7
SYNE2-222	ENST00000556725	PDE3A	Q14432	1141 aa		10.68	□□□□□ -0.7
SYNE2-222	ENST00000556725	SHH	Q15465	462 aa		10.68	□□□□□ -0.7
SYNE2-222	ENST00000556725	PLEKHH3	Q7Z736	793 aa		10.68	□□□□□ -0.7
SYNE2-222	ENST00000556725	CCAR1	Q8IX12	1150 aa	Known RBP	10.68	□□□□□ -0.7
SYNE2-222	ENST00000556725	NEUROD6	Q96NK8	337 aa		10.68	□□□□□ -0.7
SYNE2-222	ENST00000556725	SEMA6B	Q9H3T3	888 aa		10.68	□□□□□ -0.7
SYNE2-222	ENST00000556725	EMILIN3	Q9NT22	766 aa		10.68	□□□□□ -0.7
SYNE2-222	ENST00000556725	RAI14	Q9P0K7	980 aa		10.68	□□□□□ -0.7
SYNE2-222	ENST00000556725	PI4KB	Q9UBF8	816 aa		10.68	□□□□□ -0.7
SYNE2-222	ENST00000556725	HERC5	Q9UII4	1024 aa	Known RBP	10.68	□□□□□ -0.7
SYNE2-222	ENST00000556725	C19orf81	C9J6K1	198 aa		10.67	□□□□□ -0.7
SYNE2-222	ENST00000556725	CNMD	O75829	334 aa		10.67	□□□□□ -0.7
SYNE2-222	ENST00000556725	MAP4K4	O95819	1239 aa	Predicted RBP	10.67	□□□□□ -0.7
SYNE2-222	ENST00000556725	ASNS	P08243	561 aa		10.67	□□□□□ -0.7
SYNE2-222	ENST00000556725	GSTO1	P78417	241 aa		10.67	□□□□□ -0.7
SYNE2-222	ENST00000556725	MAP2K5	Q13163	448 aa		10.67	□□□□□ -0.7
SYNE2-222	ENST00000556725	MVP	Q14764	893 aa	Known RBP	10.67	□□□□□ -0.7
SYNE2-222	ENST00000556725	C9orf50	Q5SZB4	431 aa		10.67	□□□□□ -0.7
SYNE2-222	ENST00000556725	ZNF697	Q5TEC3	545 aa		10.67	□□□□□ -0.7
SYNE2-222	ENST00000556725	SPATA5	Q8NB90	893 aa		10.67	□□□□□ -0.7
SYNE2-222	ENST00000556725	EDC3	Q96F86	508 aa	Known RBP	10.67	□□□□□ -0.7
SYNE2-222	ENST00000556725	MEIS3	Q99687	375 aa		10.67	□□□□□ -0.7
SYNE2-222	ENST00000556725	APBA2	Q99767	749 aa		10.67	□□□□□ -0.7
SYNE2-222	ENST00000556725	MAST2	Q6P0Q8	1798 aa		10.67	□□□□□ -0.7
SYNE2-222	ENST00000556725	CNGA1	P29973	690 aa		10.66	□□□□□ -0.7
SYNE2-222	ENST00000556725	MCAM	P43121	646 aa		10.66	□□□□□ -0.7
SYNE2-222	ENST00000556725	RTP1	P59025	263 aa		10.66	□□□□□ -0.7
SYNE2-222	ENST00000556725	METTL16	Q86W50	562 aa	Known RBP	10.66	□□□□□ -0.7
SYNE2-222	ENST00000556725	MAPKAPK5	Q8IW41	473 aa		10.66	□□□□□ -0.7
SYNE2-222	ENST00000556725	TRPV1	Q8NER1	839 aa		10.66	□□□□□ -0.7
SYNE2-222	ENST00000556725	MAFA	Q8NHW3	353 aa	Predicted RBP	10.66	□□□□□ -0.7
SYNE2-222	ENST00000556725	NPLOC4	Q8TAT6	608 aa		10.66	□□□□□ -0.7
SYNE2-222	ENST00000556725	TGFBRAP1	Q8WUH2	860 aa		10.66	□□□□□ -0.7
SYNE2-222	ENST00000556725	MYLIP	Q8WY64	445 aa		10.66	□□□□□ -0.7
SYNE2-222	ENST00000556725	TTYH1	Q9H313	450 aa	Predicted RBP	10.66	□□□□□ -0.7
SYNE2-222	ENST00000556725	PRDM6	Q9NQX0	595 aa		10.66	□□□□□ -0.7
SYNE2-222	ENST00000556725	SMC4	Q9NTJ3	1288 aa		10.66	□□□□□ -0.7
SYNE2-222	ENST00000556725	AATF	Q9NY61	560 aa	Known RBP eCLIP	10.66	□□□□□ -0.7
SYNE2-222	ENST00000556725	DDX20	Q9UHI6	824 aa	Known RBP	10.66	□□□□□ -0.7
SYNE2-222	ENST00000556725	PALD1	Q9ULE6	856 aa		10.66	□□□□□ -0.7
SYNE2-222	ENST00000556725	NOB1	Q9ULX3	412 aa	Known RBP	10.66	□□□□□ -0.7
SYNE2-222	ENST00000556725	AKAP2	Q9Y2D5	859 aa		10.66	□□□□□ -0.7
SYNE2-222	ENST00000556725	LTBP2	Q14767	1821 aa		10.65	□□□□□ -0.7
SYNE2-222	ENST00000556725	ANP32C	O43423	234 aa		10.65	□□□□□ -0.7
SYNE2-222	ENST00000556725	ARID4A	P29374	1257 aa	Predicted RBP	10.65	□□□□□ -0.7
SYNE2-222	ENST00000556725	CYP2C19	P33261	490 aa		10.65	□□□□□ -0.7
SYNE2-222	ENST00000556725	ZYX	Q15942	572 aa	Known RBP	10.65	□□□□□ -0.7
SYNE2-222	ENST00000556725	ALDH1L2	Q3SY69	923 aa		10.65	□□□□□ -0.7
SYNE2-222	ENST00000556725	GJC2	Q5T442	439 aa	Predicted RBP	10.65	□□□□□ -0.7
SYNE2-222	ENST00000556725	WDR78	Q5VTH9	848 aa		10.65	□□□□□ -0.7
SYNE2-222	ENST00000556725	MFSD14C	Q5VZR4	134 aa		10.65	□□□□□ -0.7
SYNE2-222	ENST00000556725	ANO1	Q5XXA6	986 aa		10.65	□□□□□ -0.7
SYNE2-222	ENST00000556725	USP17L2	Q6R6M4	530 aa		10.65	□□□□□ -0.7
SYNE2-222	ENST00000556725	TMEM92	Q6UXU6	159 aa		10.65	□□□□□ -0.7
SYNE2-222	ENST00000556725	ADGRA1	Q86SQ6	560 aa		10.65	□□□□□ -0.7
SYNE2-222	ENST00000556725	FOXP4	Q8IVH2	680 aa	Predicted RBP	10.65	□□□□□ -0.7
SYNE2-222	ENST00000556725	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	10.65	□□□□□ -0.7
SYNE2-222	ENST00000556725	LPAR1	Q92633	364 aa		10.65	□□□□□ -0.7
SYNE2-222	ENST00000556725	DHX36	Q9H2U1	1008 aa	Known RBP	10.65	□□□□□ -0.7
SYNE2-222	ENST00000556725	SNRK	Q9NRH2	765 aa		10.65	□□□□□ -0.7
SYNE2-222	ENST00000556725	LRP2BP	Q9P2M1	347 aa		10.65	□□□□□ -0.7
SYNE2-222	ENST00000556725	SAP30BP	Q9UHR5	308 aa	Known RBP	10.65	□□□□□ -0.7
SYNE2-222	ENST00000556725	ZBTB21	Q9ULJ3	1066 aa		10.65	□□□□□ -0.7
SYNE2-222	ENST00000556725	ATP11B	Q9Y2G3	1177 aa		10.65	□□□□□ -0.7
SYNE2-222	ENST00000556725	CDK5RAP2	Q96SN8	1893 aa		10.65	□□□□□ -0.7
SYNE2-222	ENST00000556725	CDH23	Q9H251	3354 aa		10.65	□□□□□ -0.71
SYNE2-222	ENST00000556725	MYO5A	Q9Y4I1	1855 aa	Known RBP	10.64	□□□□□ -0.71
SYNE2-222	ENST00000556725	SRGAP3	O43295	1099 aa		10.64	□□□□□ -0.71
SYNE2-222	ENST00000556725	PTPRE	P23469	700 aa		10.64	□□□□□ -0.71
SYNE2-222	ENST00000556725	ATP2B2	Q01814	1243 aa		10.64	□□□□□ -0.71
SYNE2-222	ENST00000556725	SLFN5	Q08AF3	891 aa		10.64	□□□□□ -0.71
SYNE2-222	ENST00000556725	GORAB	Q5T7V8	394 aa		10.64	□□□□□ -0.71
SYNE2-222	ENST00000556725	NAA16	Q6N069	864 aa	Predicted RBP	10.64	□□□□□ -0.71
SYNE2-222	ENST00000556725	SLC39A5	Q6ZMH5	540 aa		10.64	□□□□□ -0.71
SYNE2-222	ENST00000556725	SH3RF1	Q7Z6J0	888 aa		10.64	□□□□□ -0.71
SYNE2-222	ENST00000556725	BAD	Q92934	168 aa		10.64	□□□□□ -0.71
SYNE2-222	ENST00000556725	CDCA7L	Q96GN5	454 aa		10.64	□□□□□ -0.71
SYNE2-222	ENST00000556725	CWC22	Q9HCG8	908 aa	Known RBP	10.64	□□□□□ -0.71

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