RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 RPL6Q02878 288 aaKnown RBP7.04□□□□□ -1.28
SCFD1-219ENST00000556413 ABHD4Q8TB40 342 aa7.04□□□□□ -1.28
SCFD1-219ENST00000556413 TOX2Q96NM4 488 aa7.04□□□□□ -1.28
SCFD1-219ENST00000556413 DUSP15Q9H1R2 295 aaPredicted RBP7.04□□□□□ -1.28
SCFD1-219ENST00000556413 ADAM30Q9UKF2 790 aa7.04□□□□□ -1.28
SCFD1-219ENST00000556413 CEP131Q9UPN4 1083 aa7.04□□□□□ -1.28
SCFD1-219ENST00000556413 RLBP1P12271 317 aa7.03□□□□□ -1.28
SCFD1-219ENST00000556413 ERVFC1P60507 584 aa7.03□□□□□ -1.28
SCFD1-219ENST00000556413 C1QL4Q86Z23 238 aa7.03□□□□□ -1.28
SCFD1-219ENST00000556413 PPP1R13LQ8WUF5 828 aa7.03□□□□□ -1.28
SCFD1-219ENST00000556413 NOC4LQ9BVI4 516 aaKnown RBP7.03□□□□□ -1.28
SCFD1-219ENST00000556413 NSUN3Q9H649 340 aaKnown RBP7.03□□□□□ -1.28
SCFD1-219ENST00000556413 TMEM59LQ9UK28 342 aa7.03□□□□□ -1.28
SCFD1-219ENST00000556413 CORINQ9Y5Q5 1042 aa7.03□□□□□ -1.28
SCFD1-219ENST00000556413 PATL2C9JE40 543 aaKnown RBP7.02□□□□□ -1.29
SCFD1-219ENST00000556413 C1QTNF9P0C862 333 aa7.02□□□□□ -1.29
SCFD1-219ENST00000556413 RAC2P15153 192 aa7.02□□□□□ -1.29
SCFD1-219ENST00000556413 HK2P52789 917 aa7.02□□□□□ -1.29
SCFD1-219ENST00000556413 TAF1CQ15572 869 aaPredicted RBP7.02□□□□□ -1.29
SCFD1-219ENST00000556413 CREG2Q8IUH2 290 aa7.02□□□□□ -1.29
SCFD1-219ENST00000556413 FBXO15Q8NCQ5 510 aaPredicted RBP7.02□□□□□ -1.29
SCFD1-219ENST00000556413 ADAMTS10Q9H324 1103 aa7.02□□□□□ -1.29
SCFD1-219ENST00000556413 KCNK12Q9HB15 430 aa7.02□□□□□ -1.29
SCFD1-219ENST00000556413 PARP2Q9UGN5 583 aa7.02□□□□□ -1.29
SCFD1-219ENST00000556413 UPK3BL1B0FP48 263 aa7.01□□□□□ -1.29
SCFD1-219ENST00000556413 UPK3BL2E5RIL1 263 aa7.01□□□□□ -1.29
SCFD1-219ENST00000556413 TPP2P29144 1249 aaPredicted RBP7.01□□□□□ -1.29
SCFD1-219ENST00000556413 ST13P50502 369 aaKnown RBP7.01□□□□□ -1.29
SCFD1-219ENST00000556413 DAB2P98082 770 aa7.01□□□□□ -1.29
SCFD1-219ENST00000556413 GAB4Q2WGN9 574 aa7.01□□□□□ -1.29
SCFD1-219ENST00000556413 ANKLE2Q86XL3 938 aa7.01□□□□□ -1.29
SCFD1-219ENST00000556413 LRRC56Q8IYG6 542 aaPredicted RBP7.01□□□□□ -1.29
SCFD1-219ENST00000556413 PHC3Q8NDX5 983 aa7.01□□□□□ -1.29
SCFD1-219ENST00000556413 MYLIPQ8WY64 445 aa7.01□□□□□ -1.29
SCFD1-219ENST00000556413 KRTAP4-9Q9BYQ8 210 aa7.01□□□□□ -1.29
SCFD1-219ENST00000556413 TRIT1Q9H3H1 467 aaKnown RBP7.01□□□□□ -1.29
SCFD1-219ENST00000556413 HPXP02790 462 aa7□□□□□ -1.29
SCFD1-219ENST00000556413 CTSHP09668 335 aa7□□□□□ -1.29
SCFD1-219ENST00000556413 SRFP11831 508 aa7□□□□□ -1.29
SCFD1-219ENST00000556413 PLCG1P19174 1290 aa7□□□□□ -1.29
SCFD1-219ENST00000556413 LCNL1Q6ZST4 164 aa7□□□□□ -1.29
SCFD1-219ENST00000556413 CCDC84Q86UT8 332 aaPredicted RBP7□□□□□ -1.29
SCFD1-219ENST00000556413 ZSCAN18Q8TBC5 510 aaPredicted RBP7□□□□□ -1.29
SCFD1-219ENST00000556413 CYB5D2Q8WUJ1 264 aa7□□□□□ -1.29
SCFD1-219ENST00000556413 NFIBO00712 420 aa6.99□□□□□ -1.29
SCFD1-219ENST00000556413 TRHRP34981 398 aaPredicted RBP6.99□□□□□ -1.29
SCFD1-219ENST00000556413 PSMD2Q13200 908 aa6.99□□□□□ -1.29
SCFD1-219ENST00000556413 BNC2Q6ZN30 1099 aaPredicted RBP6.99□□□□□ -1.29
SCFD1-219ENST00000556413 DTWD2Q8NBA8 298 aa6.99□□□□□ -1.29
SCFD1-219ENST00000556413 FAM13CQ8NE31 585 aa6.99□□□□□ -1.29
SCFD1-219ENST00000556413 GPR62Q9BZJ7 368 aa6.99□□□□□ -1.29
SCFD1-219ENST00000556413 EPB41L4BQ9H329 900 aa6.99□□□□□ -1.29
SCFD1-219ENST00000556413 SP110Q9HB58 689 aa6.99□□□□□ -1.29
SCFD1-219ENST00000556413 DCP1AQ9NPI6 582 aaPredicted RBP6.99□□□□□ -1.29
SCFD1-219ENST00000556413 GPATCH2Q9NW75 528 aa6.99□□□□□ -1.29
SCFD1-219ENST00000556413 USP31Q70CQ4 1352 aa6.98□□□□□ -1.29
SCFD1-219ENST00000556413 FAM221AA4D161 298 aa6.98□□□□□ -1.29
SCFD1-219ENST00000556413 F6X3S4 739 aa6.98□□□□□ -1.29
SCFD1-219ENST00000556413 CILPO75339 1184 aa6.98□□□□□ -1.29
SCFD1-219ENST00000556413 TMEM201Q5SNT2 666 aa6.98□□□□□ -1.29
SCFD1-219ENST00000556413 SND1Q7KZF4 910 aaKnown RBP eCLIP6.98□□□□□ -1.29
SCFD1-219ENST00000556413 TSPYL5Q86VY4 417 aaPredicted RBP6.98□□□□□ -1.29
SCFD1-219ENST00000556413 DUSP13Q9UII6 198 aa6.98□□□□□ -1.29
SCFD1-219ENST00000556413 LRRN2O75325 713 aa6.97□□□□□ -1.29
SCFD1-219ENST00000556413 TMEM253P0C7T8 217 aa6.97□□□□□ -1.29
SCFD1-219ENST00000556413 YARSP54577 528 aaKnown RBP6.97□□□□□ -1.29
SCFD1-219ENST00000556413 LMNB2Q03252 620 aa6.97□□□□□ -1.29
SCFD1-219ENST00000556413 EGR3Q06889 387 aa6.97□□□□□ -1.29
SCFD1-219ENST00000556413 CAMK2GQ13555 558 aaPredicted RBP6.97□□□□□ -1.29
SCFD1-219ENST00000556413 TMC4Q7Z404 712 aa6.97□□□□□ -1.29
SCFD1-219ENST00000556413 FAM161BQ96MY7 647 aa6.97□□□□□ -1.29
SCFD1-219ENST00000556413 KCNH3Q9ULD8 1083 aa6.97□□□□□ -1.29
SCFD1-219ENST00000556413 BPNT1O95861 308 aa6.96□□□□□ -1.3
SCFD1-219ENST00000556413 F13A1P00488 732 aa6.96□□□□□ -1.3
SCFD1-219ENST00000556413 PF4P02776 101 aa6.96□□□□□ -1.3
SCFD1-219ENST00000556413 ZGLP1P0C6A0 271 aa6.96□□□□□ -1.3
SCFD1-219ENST00000556413 SIAH1Q8IUQ4 282 aa6.96□□□□□ -1.3
SCFD1-219ENST00000556413 SLFN12Q8IYM2 578 aa6.96□□□□□ -1.3
SCFD1-219ENST00000556413 RNF141Q8WVD5 230 aa6.96□□□□□ -1.3
SCFD1-219ENST00000556413 GATAD2BQ8WXI9 593 aa6.96□□□□□ -1.3
SCFD1-219ENST00000556413 RNF32Q9H0A6 362 aa6.96□□□□□ -1.3
SCFD1-219ENST00000556413 C19orf44Q9H6X5 657 aa6.96□□□□□ -1.3
SCFD1-219ENST00000556413 PRR36Q9H6K5 1346 aa6.96□□□□□ -1.3
SCFD1-219ENST00000556413 KRTAP9-7A8MTY7 169 aa6.95□□□□□ -1.3
SCFD1-219ENST00000556413 NPIPB6E9PJ23 425 aa6.95□□□□□ -1.3
SCFD1-219ENST00000556413 MED14OSP0DP75 135 aa6.95□□□□□ -1.3
SCFD1-219ENST00000556413 ZSCAN22P10073 491 aaPredicted RBP6.95□□□□□ -1.3
SCFD1-219ENST00000556413 XPCQ01831 940 aaPredicted RBP6.95□□□□□ -1.3
SCFD1-219ENST00000556413 DIEXFQ68CQ4 756 aaKnown RBP6.95□□□□□ -1.3
SCFD1-219ENST00000556413 DNAJC14Q6Y2X3 702 aaPredicted RBP6.95□□□□□ -1.3
SCFD1-219ENST00000556413 ATG14Q6ZNE5 492 aa6.95□□□□□ -1.3
SCFD1-219ENST00000556413 PDZD8Q8NEN9 1154 aa6.95□□□□□ -1.3
SCFD1-219ENST00000556413 CD320Q9NPF0 282 aa6.95□□□□□ -1.3
SCFD1-219ENST00000556413 REV1Q9UBZ9 1251 aa6.95□□□□□ -1.3
SCFD1-219ENST00000556413 PCDHA11Q9Y5I1 949 aa6.95□□□□□ -1.3
SCFD1-219ENST00000556413 ETV2O00321 342 aaPredicted RBP6.94□□□□□ -1.3
SCFD1-219ENST00000556413 GLDCP23378 1020 aa6.94□□□□□ -1.3
SCFD1-219ENST00000556413 RHOVQ96L33 236 aa6.94□□□□□ -1.3
SCFD1-219ENST00000556413 POLR3KQ9Y2Y1 108 aaPredicted RBP6.94□□□□□ -1.3
SCFD1-219ENST00000556413 CHURC1-FNTBB4DL54 471 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms