RNA–Protein interactions for RNA: ENST00000556288.5

ATXN3-238, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 901 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-238	ENST00000556288	ANKRD33B	A6NCL7	494 aa		6.17	□□□□□ -1.42
ATXN3-238	ENST00000556288	SPDYE3	A6NKU9	549 aa		6.17	□□□□□ -1.42
ATXN3-238	ENST00000556288	FAM177B	A6PVY3	158 aa		6.17	□□□□□ -1.42
ATXN3-238	ENST00000556288	PDE2A	O00408	941 aa	Predicted RBP	6.17	□□□□□ -1.42
ATXN3-238	ENST00000556288	NEFM	P07197	916 aa		6.17	□□□□□ -1.42
ATXN3-238	ENST00000556288	U2AF1L5	P0DN76	240 aa	Predicted RBP	6.17	□□□□□ -1.42
ATXN3-238	ENST00000556288	U2AF1	Q01081	240 aa	Known RBP eCLIP	6.17	□□□□□ -1.42
ATXN3-238	ENST00000556288	C1orf141	Q5JVX7	400 aa		6.17	□□□□□ -1.42
ATXN3-238	ENST00000556288	TMCO4	Q5TGY1	634 aa		6.17	□□□□□ -1.42
ATXN3-238	ENST00000556288	MSL1	Q68DK7	614 aa		6.17	□□□□□ -1.42
ATXN3-238	ENST00000556288	ZNF530	Q6P9A1	599 aa	Predicted RBP	6.17	□□□□□ -1.42
ATXN3-238	ENST00000556288	KRTAP19-1	Q8IUB9	90 aa		6.17	□□□□□ -1.42
ATXN3-238	ENST00000556288	IL22RA1	Q8N6P7	574 aa		6.17	□□□□□ -1.42
ATXN3-238	ENST00000556288	CCDC74A	Q96AQ1	378 aa		6.17	□□□□□ -1.42
ATXN3-238	ENST00000556288	POP1	Q99575	1024 aa	Known RBP	6.17	□□□□□ -1.42
ATXN3-238	ENST00000556288	ZKSCAN3	Q9BRR0	538 aa		6.17	□□□□□ -1.42
ATXN3-238	ENST00000556288	NOP53	Q9NZM5	478 aa	Known RBP	6.17	□□□□□ -1.42
ATXN3-238	ENST00000556288	KIF24	Q5T7B8	1368 aa		6.17	□□□□□ -1.42
ATXN3-238	ENST00000556288	SCN11A	Q9UI33	1791 aa		6.16	□□□□□ -1.42
ATXN3-238	ENST00000556288	PNMA6F	A0A0J9YX94	578 aa		6.16	□□□□□ -1.42
ATXN3-238	ENST00000556288		A0A1W2PP55	124 aa		6.16	□□□□□ -1.42
ATXN3-238	ENST00000556288	NFKBIE	O00221	500 aa		6.16	□□□□□ -1.42
ATXN3-238	ENST00000556288	IL13	P35225	146 aa		6.16	□□□□□ -1.42
ATXN3-238	ENST00000556288	TRIM28	Q13263	835 aa	Known RBP	6.16	□□□□□ -1.42
ATXN3-238	ENST00000556288	PEAR1	Q5VY43	1037 aa	Predicted RBP	6.16	□□□□□ -1.42
ATXN3-238	ENST00000556288	IFNL2	Q8IZJ0	200 aa		6.16	□□□□□ -1.42
ATXN3-238	ENST00000556288	NXPE3	Q969Y0	559 aa		6.16	□□□□□ -1.42
ATXN3-238	ENST00000556288	HHIP	Q96QV1	700 aa		6.16	□□□□□ -1.42
ATXN3-238	ENST00000556288	PCDH11X	Q9BZA7	1347 aa		6.16	□□□□□ -1.42
ATXN3-238	ENST00000556288	PCDH11Y	Q9BZA8	1340 aa		6.16	□□□□□ -1.42
ATXN3-238	ENST00000556288	MEGF6	O75095	1541 aa		6.15	□□□□□ -1.42
ATXN3-238	ENST00000556288	NHS	Q6T4R5	1651 aa		6.15	□□□□□ -1.42
ATXN3-238	ENST00000556288	GADD45B	O75293	160 aa	Predicted RBP	6.15	□□□□□ -1.42
ATXN3-238	ENST00000556288	PTPRA	P18433	802 aa		6.15	□□□□□ -1.42
ATXN3-238	ENST00000556288	CDC27	P30260	824 aa		6.15	□□□□□ -1.42
ATXN3-238	ENST00000556288	CABP4	P57796	275 aa		6.15	□□□□□ -1.42
ATXN3-238	ENST00000556288	R3HDM1	Q15032	1099 aa	Known RBP	6.15	□□□□□ -1.42
ATXN3-238	ENST00000556288	RALBP1	Q15311	655 aa		6.15	□□□□□ -1.42
ATXN3-238	ENST00000556288	ENOX2	Q16206	610 aa	Known RBP	6.15	□□□□□ -1.42
ATXN3-238	ENST00000556288	AMOT	Q4VCS5	1084 aa		6.15	□□□□□ -1.42
ATXN3-238	ENST00000556288	PRRT3	Q5FWE3	981 aa		6.15	□□□□□ -1.42
ATXN3-238	ENST00000556288	CACTIN-AS1	Q8N1I8	211 aa		6.15	□□□□□ -1.42
ATXN3-238	ENST00000556288	TMEM102	Q8N9M5	508 aa	Predicted RBP	6.15	□□□□□ -1.42
ATXN3-238	ENST00000556288	EPS8L3	Q8TE67	593 aa	Known RBP	6.15	□□□□□ -1.42
ATXN3-238	ENST00000556288	NPHS2	Q9NP85	383 aa		6.15	□□□□□ -1.42
ATXN3-238	ENST00000556288	PKD1L3	Q7Z443	1732 aa		6.15	□□□□□ -1.42
ATXN3-238	ENST00000556288	TAF1L	Q8IZX4	1826 aa		6.15	□□□□□ -1.43
ATXN3-238	ENST00000556288	DISP2	A7MBM2	1401 aa		6.15	□□□□□ -1.43
ATXN3-238	ENST00000556288	TNS2	Q63HR2	1409 aa		6.15	□□□□□ -1.43
ATXN3-238	ENST00000556288	FAM229A	H3BQW9	127 aa		6.14	□□□□□ -1.43
ATXN3-238	ENST00000556288	CYP27B1	O15528	508 aa		6.14	□□□□□ -1.43
ATXN3-238	ENST00000556288	ANP32C	O43423	234 aa		6.14	□□□□□ -1.43
ATXN3-238	ENST00000556288	P4HB	P07237	508 aa	Known RBP	6.14	□□□□□ -1.43
ATXN3-238	ENST00000556288	COL8A1	P27658	744 aa		6.14	□□□□□ -1.43
ATXN3-238	ENST00000556288	CDC25B	P30305	580 aa		6.14	□□□□□ -1.43
ATXN3-238	ENST00000556288	RAC1	P63000	192 aa		6.14	□□□□□ -1.43
ATXN3-238	ENST00000556288	ATP2B2	Q01814	1243 aa		6.14	□□□□□ -1.43
ATXN3-238	ENST00000556288	FMR1	Q06787	632 aa	Known RBP eCLIP	6.14	□□□□□ -1.43
ATXN3-238	ENST00000556288	TXNRD1	Q16881	649 aa		6.14	□□□□□ -1.43
ATXN3-238	ENST00000556288	DNAJC14	Q6Y2X3	702 aa	Predicted RBP	6.14	□□□□□ -1.43
ATXN3-238	ENST00000556288	ASAP3	Q8TDY4	903 aa		6.14	□□□□□ -1.43
ATXN3-238	ENST00000556288	CAMKK2	Q96RR4	588 aa		6.14	□□□□□ -1.43
ATXN3-238	ENST00000556288	EHD4	Q9H223	541 aa		6.14	□□□□□ -1.43
ATXN3-238	ENST00000556288	LIN7B	Q9HAP6	207 aa		6.14	□□□□□ -1.43
ATXN3-238	ENST00000556288	SH2B1	Q9NRF2	756 aa	Predicted RBP	6.14	□□□□□ -1.43
ATXN3-238	ENST00000556288	TMOD3	Q9NYL9	352 aa		6.14	□□□□□ -1.43
ATXN3-238	ENST00000556288	PPME1	Q9Y570	386 aa		6.14	□□□□□ -1.43
ATXN3-238	ENST00000556288	NUP188	Q5SRE5	1749 aa		6.13	□□□□□ -1.43
ATXN3-238	ENST00000556288		A0A0A0MRY4	1105 aa		6.13	□□□□□ -1.43
ATXN3-238	ENST00000556288	PLSCR1	O15162	318 aa		6.13	□□□□□ -1.43
ATXN3-238	ENST00000556288	HSP90AB1	P08238	724 aa	Known RBP	6.13	□□□□□ -1.43
ATXN3-238	ENST00000556288	PHKG2	P15735	406 aa		6.13	□□□□□ -1.43
ATXN3-238	ENST00000556288	PRKAR2B	P31323	418 aa		6.13	□□□□□ -1.43
ATXN3-238	ENST00000556288	WDR43	Q15061	677 aa	Known RBP eCLIP	6.13	□□□□□ -1.43
ATXN3-238	ENST00000556288	KIAA0319	Q5VV43	1072 aa		6.13	□□□□□ -1.43
ATXN3-238	ENST00000556288	ADAMTSL4	Q6UY14	1074 aa		6.13	□□□□□ -1.43
ATXN3-238	ENST00000556288	SETDB2	Q96T68	719 aa		6.13	□□□□□ -1.43
ATXN3-238	ENST00000556288	ADAM19	Q9H013	955 aa		6.13	□□□□□ -1.43
ATXN3-238	ENST00000556288	MUC3B	Q9H195	1237 aa		6.13	□□□□□ -1.43
ATXN3-238	ENST00000556288	LGR6	Q9HBX8	967 aa		6.13	□□□□□ -1.43
ATXN3-238	ENST00000556288	STK32B	Q9NY57	414 aa		6.13	□□□□□ -1.43
ATXN3-238	ENST00000556288	WWC3	Q9ULE0	1092 aa		6.13	□□□□□ -1.43
ATXN3-238	ENST00000556288	IGSF1	Q8N6C5	1336 aa		6.13	□□□□□ -1.43
ATXN3-238	ENST00000556288	NPC1L1	Q9UHC9	1359 aa		6.13	□□□□□ -1.43
ATXN3-238	ENST00000556288	LY75	O60449	1722 aa		6.13	□□□□□ -1.43
ATXN3-238	ENST00000556288	LINC01387	J3KSC0	135 aa		6.12	□□□□□ -1.43
ATXN3-238	ENST00000556288	LDHB	P07195	334 aa	Known RBP	6.12	□□□□□ -1.43
ATXN3-238	ENST00000556288	MTHFSD	Q2M296	383 aa	Known RBP	6.12	□□□□□ -1.43
ATXN3-238	ENST00000556288	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	6.12	□□□□□ -1.43
ATXN3-238	ENST00000556288	EAPP	Q56P03	285 aa	Predicted RBP	6.12	□□□□□ -1.43
ATXN3-238	ENST00000556288	ALG1L	Q6GMV1	187 aa		6.12	□□□□□ -1.43
ATXN3-238	ENST00000556288	TXNDC11	Q6PKC3	985 aa		6.12	□□□□□ -1.43
ATXN3-238	ENST00000556288	PI16	Q6UXB8	463 aa		6.12	□□□□□ -1.43
ATXN3-238	ENST00000556288	CCDC146	Q8IYE0	955 aa		6.12	□□□□□ -1.43
ATXN3-238	ENST00000556288	BSND	Q8WZ55	320 aa		6.12	□□□□□ -1.43
ATXN3-238	ENST00000556288	PIGB	Q92521	554 aa		6.12	□□□□□ -1.43
ATXN3-238	ENST00000556288	RTF1	Q92541	710 aa	Known RBP	6.12	□□□□□ -1.43
ATXN3-238	ENST00000556288	RREB1	Q92766	1687 aa		6.12	□□□□□ -1.43
ATXN3-238	ENST00000556288	PHACTR3	Q96KR7	559 aa		6.12	□□□□□ -1.43
ATXN3-238	ENST00000556288	EP400	Q96L91	3159 aa		6.12	□□□□□ -1.43

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