RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 BCRP11274 1271 aa16.41■□□□□ 0.22
SHMT2-219ENST00000555563 ZYXQ15942 572 aaKnown RBP16.41■□□□□ 0.22
SHMT2-219ENST00000555563 FBXO46Q6PJ61 603 aaPredicted RBP16.41■□□□□ 0.22
SHMT2-219ENST00000555563 TMEM179Q6ZVK1 233 aa16.41■□□□□ 0.22
SHMT2-219ENST00000555563 CLEC10AQ8IUN9 316 aa16.41■□□□□ 0.22
SHMT2-219ENST00000555563 IFNL3Q8IZI9 196 aa16.41■□□□□ 0.22
SHMT2-219ENST00000555563 ACER1Q8TDN7 264 aa16.41■□□□□ 0.22
SHMT2-219ENST00000555563 NACAP1Q9BZK3 213 aa16.41■□□□□ 0.22
SHMT2-219ENST00000555563 EFCC1Q9HA90 598 aa16.41■□□□□ 0.22
SHMT2-219ENST00000555563 EMILIN3Q9NT22 766 aa16.41■□□□□ 0.22
SHMT2-219ENST00000555563 GREB1LQ9C091 1923 aaPredicted RBP16.41■□□□□ 0.22
SHMT2-219ENST00000555563 ECM2O94769 699 aaPredicted RBP16.4■□□□□ 0.22
SHMT2-219ENST00000555563 NMIQ13287 307 aaPredicted RBP16.4■□□□□ 0.22
SHMT2-219ENST00000555563 PABPC4Q13310 644 aaKnown RBP eCLIP16.4■□□□□ 0.22
SHMT2-219ENST00000555563 USP17L2Q6R6M4 530 aa16.4■□□□□ 0.22
SHMT2-219ENST00000555563 TICAM2Q86XR7 235 aa16.4■□□□□ 0.22
SHMT2-219ENST00000555563 STK11IPQ8N1F8 1099 aa16.4■□□□□ 0.22
SHMT2-219ENST00000555563 C12orf42Q96LP6 360 aa16.4■□□□□ 0.22
SHMT2-219ENST00000555563 CCDC17Q96LX7 622 aa16.4■□□□□ 0.22
SHMT2-219ENST00000555563 KIAA1683Q9H0B3 1180 aa16.4■□□□□ 0.22
SHMT2-219ENST00000555563 NAPBQ9H115 298 aa16.4■□□□□ 0.22
SHMT2-219ENST00000555563 ASCC2Q9H1I8 757 aaPredicted RBP16.4■□□□□ 0.22
SHMT2-219ENST00000555563 HELLSQ9NRZ9 838 aa16.4■□□□□ 0.22
SHMT2-219ENST00000555563 HPS5Q9UPZ3 1129 aa16.4■□□□□ 0.22
SHMT2-219ENST00000555563 CTGFP29279 349 aa16.39■□□□□ 0.21
SHMT2-219ENST00000555563 SOX10P56693 466 aa16.39■□□□□ 0.21
SHMT2-219ENST00000555563 VPS53Q5VIR6 699 aa16.39■□□□□ 0.21
SHMT2-219ENST00000555563 MGAMO43451 1857 aa16.38■□□□□ 0.21
SHMT2-219ENST00000555563 A0A1W2PRG0 241 aa16.38■□□□□ 0.21
SHMT2-219ENST00000555563 GSPT1P15170 499 aaKnown RBP16.38■□□□□ 0.21
SHMT2-219ENST00000555563 SDSP20132 328 aa16.38■□□□□ 0.21
SHMT2-219ENST00000555563 RASA1P20936 1047 aa16.38■□□□□ 0.21
SHMT2-219ENST00000555563 OSBPP22059 807 aa16.38■□□□□ 0.21
SHMT2-219ENST00000555563 HOXA7P31268 230 aaPredicted RBP16.38■□□□□ 0.21
SHMT2-219ENST00000555563 USP14P54578 494 aa16.38■□□□□ 0.21
SHMT2-219ENST00000555563 IRX3P78415 501 aaPredicted RBP16.38■□□□□ 0.21
SHMT2-219ENST00000555563 ICA1Q05084 483 aa16.38■□□□□ 0.21
SHMT2-219ENST00000555563 KIF22Q14807 665 aa16.38■□□□□ 0.21
SHMT2-219ENST00000555563 MCMDC2Q4G0Z9 681 aa16.38■□□□□ 0.21
SHMT2-219ENST00000555563 ZNF589Q86UQ0 364 aaPredicted RBP16.38■□□□□ 0.21
SHMT2-219ENST00000555563 ANKRD13CQ8N6S4 541 aa16.38■□□□□ 0.21
SHMT2-219ENST00000555563 PTPN22Q9Y2R2 807 aa16.38■□□□□ 0.21
SHMT2-219ENST00000555563 VCAM1P19320 739 aa16.37■□□□□ 0.21
SHMT2-219ENST00000555563 PSMC4P43686 418 aa16.37■□□□□ 0.21
SHMT2-219ENST00000555563 PPARAQ07869 468 aa16.37■□□□□ 0.21
SHMT2-219ENST00000555563 ARHGEF6Q15052 776 aa16.37■□□□□ 0.21
SHMT2-219ENST00000555563 TTC22Q5TAA0 569 aa16.37■□□□□ 0.21
SHMT2-219ENST00000555563 TRIM47Q96LD4 638 aa16.37■□□□□ 0.21
SHMT2-219ENST00000555563 CCDC171Q6TFL3 1326 aa16.37■□□□□ 0.21
SHMT2-219ENST00000555563 PRDM1O75626 825 aa16.36■□□□□ 0.21
SHMT2-219ENST00000555563 GCLCP48506 637 aaPredicted RBP16.36■□□□□ 0.21
SHMT2-219ENST00000555563 FAM110CQ1W6H9 321 aa16.36■□□□□ 0.21
SHMT2-219ENST00000555563 SIAH1Q8IUQ4 282 aa16.36■□□□□ 0.21
SHMT2-219ENST00000555563 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.36■□□□□ 0.215e-8■■■□□ 18.8
SHMT2-219ENST00000555563 MKNK2Q9HBH9 465 aa16.36■□□□□ 0.21
SHMT2-219ENST00000555563 ARHGEF10LQ9HCE6 1279 aa16.36■□□□□ 0.21
SHMT2-219ENST00000555563 DIAPH3Q9NSV4 1193 aa16.36■□□□□ 0.21
SHMT2-219ENST00000555563 TNRC18O15417 2968 aaPredicted RBP16.36■□□□□ 0.21
SHMT2-219ENST00000555563 HERVK_113P62684 666 aa16.35■□□□□ 0.21
SHMT2-219ENST00000555563 P2RX7Q99572 595 aaKnown RBP16.35■□□□□ 0.21
SHMT2-219ENST00000555563 PTCH2Q9Y6C5 1203 aa16.35■□□□□ 0.21
SHMT2-219ENST00000555563 FMNL1O95466 1100 aaPredicted RBP16.34■□□□□ 0.21
SHMT2-219ENST00000555563 GNRH1P01148 92 aa16.34■□□□□ 0.21
SHMT2-219ENST00000555563 HSPD1P10809 573 aaKnown RBP16.34■□□□□ 0.21
SHMT2-219ENST00000555563 FCGRTP55899 365 aa16.34■□□□□ 0.21
SHMT2-219ENST00000555563 KIAA1755Q5JYT7 1200 aa16.34■□□□□ 0.21
SHMT2-219ENST00000555563 RPAP3Q9H6T3 665 aaPredicted RBP16.34■□□□□ 0.21
SHMT2-219ENST00000555563 SH2D4AQ9H788 454 aa16.34■□□□□ 0.21
SHMT2-219ENST00000555563 KANSL2Q9H9L4 492 aa16.34■□□□□ 0.21
SHMT2-219ENST00000555563 ZNF287Q9HBT7 754 aa16.34■□□□□ 0.21
SHMT2-219ENST00000555563 TXNRD2Q9NNW7 524 aa16.34■□□□□ 0.21
SHMT2-219ENST00000555563 TMX2Q9Y320 296 aa16.34■□□□□ 0.21
SHMT2-219ENST00000555563 ZMYM6O95789 1325 aa16.34■□□□□ 0.21
SHMT2-219ENST00000555563 PLIN4Q96Q06 1357 aa16.34■□□□□ 0.21
SHMT2-219ENST00000555563 USP17L15C9J2P7 530 aa16.33■□□□□ 0.2
SHMT2-219ENST00000555563 USP17L13C9JLJ4 530 aa16.33■□□□□ 0.2
SHMT2-219ENST00000555563 USP17L11C9JVI0 530 aa16.33■□□□□ 0.2
SHMT2-219ENST00000555563 USP17L18D6R9N7 530 aa16.33■□□□□ 0.2
SHMT2-219ENST00000555563 USP17L22D6RA61 530 aa16.33■□□□□ 0.2
SHMT2-219ENST00000555563 USP17L17D6RBQ6 530 aa16.33■□□□□ 0.2
SHMT2-219ENST00000555563 USP17L19D6RCP7 530 aa16.33■□□□□ 0.2
SHMT2-219ENST00000555563 USP17L20D6RJB6 530 aa16.33■□□□□ 0.2
SHMT2-219ENST00000555563 HIP1O00291 1037 aa16.33■□□□□ 0.2
SHMT2-219ENST00000555563 PEX10O60683 326 aa16.33■□□□□ 0.2
SHMT2-219ENST00000555563 SLC3A2P08195 630 aaKnown RBP16.33■□□□□ 0.2
SHMT2-219ENST00000555563 EEF2P13639 858 aaKnown RBP16.33■□□□□ 0.2
SHMT2-219ENST00000555563 ATP2B2Q01814 1243 aa16.33■□□□□ 0.2
SHMT2-219ENST00000555563 CTDSPL2Q05D32 466 aa16.33■□□□□ 0.2
SHMT2-219ENST00000555563 PDE4BQ07343 736 aa16.33■□□□□ 0.2
SHMT2-219ENST00000555563 USP17L24Q0WX57 530 aa16.33■□□□□ 0.2
SHMT2-219ENST00000555563 ALX1Q15699 326 aa16.33■□□□□ 0.2
SHMT2-219ENST00000555563 CWC27Q6UX04 472 aaKnown RBP16.33■□□□□ 0.2
SHMT2-219ENST00000555563 MORF4L1Q9UBU8 362 aa16.33■□□□□ 0.2
SHMT2-219ENST00000555563 SRRDQ9UH36 339 aa16.33■□□□□ 0.2
SHMT2-219ENST00000555563 A0A0G2JMZ2 1700 aa16.33■□□□□ 0.2
SHMT2-219ENST00000555563 LAMA4Q16363 1823 aa16.33■□□□□ 0.2
SHMT2-219ENST00000555563 IGKV6D-41A0A0C4DH26 115 aa16.32■□□□□ 0.2
SHMT2-219ENST00000555563 PRKCZQ05513 592 aa16.32■□□□□ 0.2
SHMT2-219ENST00000555563 POTEEQ6S8J3 1075 aa16.32■□□□□ 0.2
SHMT2-219ENST00000555563 CATSPERGQ6ZRH7 1159 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms