RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 ANKRD13CQ8N6S4 541 aa24.58■■□□□ 1.53
VTI1B-205ENST00000555543 TAOK2Q9UL54 1235 aa24.58■■□□□ 1.53
VTI1B-205ENST00000555543 GNAT2P19087 354 aa24.57■■□□□ 1.52
VTI1B-205ENST00000555543 SBK1Q52WX2 424 aa24.57■■□□□ 1.52
VTI1B-205ENST00000555543 USP17L2Q6R6M4 530 aa24.57■■□□□ 1.52
VTI1B-205ENST00000555543 CCDC129Q6ZRS4 1044 aa24.57■■□□□ 1.52
VTI1B-205ENST00000555543 CLEC10AQ8IUN9 316 aa24.57■■□□□ 1.52
VTI1B-205ENST00000555543 C12orf42Q96LP6 360 aa24.57■■□□□ 1.52
VTI1B-205ENST00000555543 KIAA1683Q9H0B3 1180 aa24.57■■□□□ 1.52
VTI1B-205ENST00000555543 ROBO3Q96MS0 1386 aa24.56■■□□□ 1.52
VTI1B-205ENST00000555543 MGAMO43451 1857 aa24.56■■□□□ 1.52
VTI1B-205ENST00000555543 OSBPP22059 807 aa24.56■■□□□ 1.52
VTI1B-205ENST00000555543 HOXA7P31268 230 aaPredicted RBP24.56■■□□□ 1.52
VTI1B-205ENST00000555543 TMEM179Q6ZVK1 233 aa24.56■■□□□ 1.52
VTI1B-205ENST00000555543 A0A1W2PRG0 241 aa24.55■■□□□ 1.52
VTI1B-205ENST00000555543 FOXP2O15409 715 aa24.55■■□□□ 1.52
VTI1B-205ENST00000555543 FMNL1O95466 1100 aaPredicted RBP24.55■■□□□ 1.52
VTI1B-205ENST00000555543 TDO2P48775 406 aa24.55■■□□□ 1.52
VTI1B-205ENST00000555543 IRX3P78415 501 aaPredicted RBP24.55■■□□□ 1.52
VTI1B-205ENST00000555543 OSBPL3Q9H4L5 887 aa24.55■■□□□ 1.52
VTI1B-205ENST00000555543 MINDY4BA8MYZ0 360 aa24.54■■□□□ 1.52
VTI1B-205ENST00000555543 PATL2C9JE40 543 aaKnown RBP24.54■■□□□ 1.52
VTI1B-205ENST00000555543 GNRH1P01148 92 aa24.54■■□□□ 1.52
VTI1B-205ENST00000555543 APPP05067 770 aa24.54■■□□□ 1.52
VTI1B-205ENST00000555543 FAM110CQ1W6H9 321 aa24.54■■□□□ 1.52
VTI1B-205ENST00000555543 IFNL3Q8IZI9 196 aa24.54■■□□□ 1.52
VTI1B-205ENST00000555543 STK11IPQ8N1F8 1099 aa24.54■■□□□ 1.52
VTI1B-205ENST00000555543 P2RX7Q99572 595 aaKnown RBP24.54■■□□□ 1.52
VTI1B-205ENST00000555543 SRRDQ9UH36 339 aa24.54■■□□□ 1.52
VTI1B-205ENST00000555543 PEX10O60683 326 aa24.53■■□□□ 1.52
VTI1B-205ENST00000555543 VCAM1P19320 739 aa24.53■■□□□ 1.52
VTI1B-205ENST00000555543 GCLCP48506 637 aaPredicted RBP24.53■■□□□ 1.52
VTI1B-205ENST00000555543 USP14P54578 494 aa24.53■■□□□ 1.52
VTI1B-205ENST00000555543 SIAH1Q8IUQ4 282 aa24.53■■□□□ 1.52
VTI1B-205ENST00000555543 CCDC17Q96LX7 622 aa24.53■■□□□ 1.52
VTI1B-205ENST00000555543 FAM227BQ96M60 508 aa24.53■■□□□ 1.52
VTI1B-205ENST00000555543 A0A0D9SFI3 127 aa24.52■■□□□ 1.52
VTI1B-205ENST00000555543 TRIM6-TRIM34B2RNG4 842 aa24.52■■□□□ 1.52
VTI1B-205ENST00000555543 FCGRTP55899 365 aa24.52■■□□□ 1.52
VTI1B-205ENST00000555543 HERVK_113P62684 666 aa24.52■■□□□ 1.52
VTI1B-205ENST00000555543 POTEEQ6S8J3 1075 aa24.52■■□□□ 1.52
VTI1B-205ENST00000555543 ARMC5Q96C12 935 aa24.52■■□□□ 1.52
VTI1B-205ENST00000555543 GREB1LQ9C091 1923 aaPredicted RBP24.52■■□□□ 1.52
VTI1B-205ENST00000555543 RASA1P20936 1047 aa24.51■■□□□ 1.51
VTI1B-205ENST00000555543 PDE4AP27815 886 aa24.51■■□□□ 1.51
VTI1B-205ENST00000555543 RGS19P49795 217 aa24.51■■□□□ 1.51
VTI1B-205ENST00000555543 ICA1Q05084 483 aa24.51■■□□□ 1.51
VTI1B-205ENST00000555543 PRKCZQ05513 592 aa24.51■■□□□ 1.51
VTI1B-205ENST00000555543 RILPL2Q969X0 211 aa24.51■■□□□ 1.51
VTI1B-205ENST00000555543 TXNRD2Q9NNW7 524 aa24.51■■□□□ 1.51
VTI1B-205ENST00000555543 MYPNQ86TC9 1320 aa24.51■■□□□ 1.51
VTI1B-205ENST00000555543 BRCA2P51587 3418 aa24.5■■□□□ 1.51
VTI1B-205ENST00000555543 PRMT2P55345 433 aa24.5■■□□□ 1.51
VTI1B-205ENST00000555543 SLC9C1Q4G0N8 1177 aa24.5■■□□□ 1.51
VTI1B-205ENST00000555543 KIAA1755Q5JYT7 1200 aa24.5■■□□□ 1.51
VTI1B-205ENST00000555543 VPS53Q5VIR6 699 aa24.5■■□□□ 1.51
VTI1B-205ENST00000555543 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.5■■□□□ 1.51
VTI1B-205ENST00000555543 NACAP1Q9BZK3 213 aa24.5■■□□□ 1.51
VTI1B-205ENST00000555543 MORF4L1Q9UBU8 362 aa24.5■■□□□ 1.51
VTI1B-205ENST00000555543 GABRQQ9UN88 632 aa24.5■■□□□ 1.51
VTI1B-205ENST00000555543 NMIQ13287 307 aaPredicted RBP24.49■■□□□ 1.51
VTI1B-205ENST00000555543 SH3TC2Q8TF17 1288 aa24.49■■□□□ 1.51
VTI1B-205ENST00000555543 NAPBQ9H115 298 aa24.49■■□□□ 1.51
VTI1B-205ENST00000555543 HELLSQ9NRZ9 838 aa24.49■■□□□ 1.51
VTI1B-205ENST00000555543 USP17L15C9J2P7 530 aa24.48■■□□□ 1.51
VTI1B-205ENST00000555543 USP17L13C9JLJ4 530 aa24.48■■□□□ 1.51
VTI1B-205ENST00000555543 USP17L11C9JVI0 530 aa24.48■■□□□ 1.51
VTI1B-205ENST00000555543 USP17L18D6R9N7 530 aa24.48■■□□□ 1.51
VTI1B-205ENST00000555543 USP17L22D6RA61 530 aa24.48■■□□□ 1.51
VTI1B-205ENST00000555543 USP17L17D6RBQ6 530 aa24.48■■□□□ 1.51
VTI1B-205ENST00000555543 USP17L19D6RCP7 530 aa24.48■■□□□ 1.51
VTI1B-205ENST00000555543 USP17L20D6RJB6 530 aa24.48■■□□□ 1.51
VTI1B-205ENST00000555543 TNPO2O14787 897 aaKnown RBP24.48■■□□□ 1.51
VTI1B-205ENST00000555543 PRDM1O75626 825 aa24.48■■□□□ 1.51
VTI1B-205ENST00000555543 HOXD10P28358 340 aa24.48■■□□□ 1.51
VTI1B-205ENST00000555543 USP17L24Q0WX57 530 aa24.48■■□□□ 1.51
VTI1B-205ENST00000555543 CATSPERGQ6ZRH7 1159 aa24.48■■□□□ 1.51
VTI1B-205ENST00000555543 ZNF333Q96JL9 665 aa24.48■■□□□ 1.51
VTI1B-205ENST00000555543 RPAP3Q9H6T3 665 aaPredicted RBP24.48■■□□□ 1.51
VTI1B-205ENST00000555543 RBPJLQ9UBG7 517 aa24.48■■□□□ 1.51
VTI1B-205ENST00000555543 ZNF589Q86UQ0 364 aaPredicted RBP24.47■■□□□ 1.51
VTI1B-205ENST00000555543 TICAM2Q86XR7 235 aa24.47■■□□□ 1.51
VTI1B-205ENST00000555543 MKNK2Q9HBH9 465 aa24.47■■□□□ 1.51
VTI1B-205ENST00000555543 ARHGEF10LQ9HCE6 1279 aa24.47■■□□□ 1.51
VTI1B-205ENST00000555543 TMX2Q9Y320 296 aa24.47■■□□□ 1.51
VTI1B-205ENST00000555543 TNRC18O15417 2968 aaPredicted RBP24.46■■□□□ 1.51
VTI1B-205ENST00000555543 EEF2P13639 858 aaKnown RBP24.46■■□□□ 1.51
VTI1B-205ENST00000555543 PPARAQ07869 468 aa24.46■■□□□ 1.51
VTI1B-205ENST00000555543 MCMDC2Q4G0Z9 681 aa24.46■■□□□ 1.51
VTI1B-205ENST00000555543 RAET1EQ8TD07 263 aa24.46■■□□□ 1.51
VTI1B-205ENST00000555543 KANSL2Q9H9L4 492 aa24.46■■□□□ 1.51
VTI1B-205ENST00000555543 FLT3LGP49771 235 aa24.45■■□□□ 1.5
VTI1B-205ENST00000555543 SPICE1Q8N0Z3 855 aa24.45■■□□□ 1.5
VTI1B-205ENST00000555543 PAGR1Q9BTK6 254 aa24.45■■□□□ 1.5
VTI1B-205ENST00000555543 DOCK3Q8IZD9 2030 aa24.45■■□□□ 1.5
VTI1B-205ENST00000555543 RBBP6Q7Z6E9 1792 aaKnown RBP24.44■■□□□ 1.5
VTI1B-205ENST00000555543 POTEFA5A3E0 1075 aa24.44■■□□□ 1.5
VTI1B-205ENST00000555543 CNMDO75829 334 aa24.44■■□□□ 1.5
VTI1B-205ENST00000555543 SDSP20132 328 aa24.44■■□□□ 1.5
VTI1B-205ENST00000555543 ERVK-9P63128 1117 aa24.44■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms