RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 ZNF341Q9BYN7 854 aa20.31■□□□□ 0.84
SHOX-204ENST00000554971 CREBZFQ9NS37 354 aa20.31■□□□□ 0.84
SHOX-204ENST00000554971 TLL2Q9Y6L7 1015 aa20.31■□□□□ 0.84
SHOX-204ENST00000554971 HUNKP57058 714 aa20.31■□□□□ 0.84
SHOX-204ENST00000554971 UBE2HP62256 183 aa20.31■□□□□ 0.84
SHOX-204ENST00000554971 JAG1P78504 1218 aa20.31■□□□□ 0.84
SHOX-204ENST00000554971 TATDN1Q6P1N9 297 aa20.31■□□□□ 0.84
SHOX-204ENST00000554971 C16orf86Q6ZW13 317 aa20.31■□□□□ 0.84
SHOX-204ENST00000554971 STK11IPQ8N1F8 1099 aa20.31■□□□□ 0.84
SHOX-204ENST00000554971 CRACR2BQ8N4Y2 399 aaPredicted RBP20.31■□□□□ 0.84
SHOX-204ENST00000554971 U3KPZ7 1027 aaPredicted RBP20.31■□□□□ 0.84
SHOX-204ENST00000554971 HAND2P61296 217 aa20.3■□□□□ 0.84
SHOX-204ENST00000554971 CTDSPL2Q05D32 466 aa20.3■□□□□ 0.84
SHOX-204ENST00000554971 FAM184AQ8NB25 1140 aa20.3■□□□□ 0.84
SHOX-204ENST00000554971 INCENPQ9NQS7 918 aa20.3■□□□□ 0.84
SHOX-204ENST00000554971 RBM27Q9P2N5 1060 aaKnown RBP20.3■□□□□ 0.84
SHOX-204ENST00000554971 HSPA6P17066 643 aa20.29■□□□□ 0.84
SHOX-204ENST00000554971 IREB2P48200 963 aaKnown RBP20.29■□□□□ 0.84
SHOX-204ENST00000554971 VGLL4Q14135 290 aa20.29■□□□□ 0.84
SHOX-204ENST00000554971 ARMC9Q7Z3E5 817 aa20.29■□□□□ 0.84
SHOX-204ENST00000554971 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.29■□□□□ 0.84
SHOX-204ENST00000554971 ANAPC4Q9UJX5 808 aa20.29■□□□□ 0.84
SHOX-204ENST00000554971 TAF6LQ9Y6J9 622 aa20.29■□□□□ 0.84
SHOX-204ENST00000554971 GREB1LQ9C091 1923 aaPredicted RBP20.29■□□□□ 0.84
SHOX-204ENST00000554971 SYCE3A1L190 88 aa20.29■□□□□ 0.84
SHOX-204ENST00000554971 RPS6KB1P23443 525 aa20.29■□□□□ 0.84
SHOX-204ENST00000554971 GJB2P29033 226 aa20.29■□□□□ 0.84
SHOX-204ENST00000554971 CDK8P49336 464 aa20.29■□□□□ 0.84
SHOX-204ENST00000554971 CCDC83Q8IWF9 413 aa20.28■□□□□ 0.84
SHOX-204ENST00000554971 AMOTL1Q8IY63 956 aa20.28■□□□□ 0.84
SHOX-204ENST00000554971 NKX2-3Q8TAU0 364 aa20.28■□□□□ 0.84
SHOX-204ENST00000554971 TSPY26PQ9H489 355 aa20.28■□□□□ 0.84
SHOX-204ENST00000554971 ABT1Q9ULW3 272 aaKnown RBP20.28■□□□□ 0.84
SHOX-204ENST00000554971 SNCAIPQ9Y6H5 919 aa20.28■□□□□ 0.84
SHOX-204ENST00000554971 PTPRFP10586 1907 aa20.28■□□□□ 0.84
SHOX-204ENST00000554971 MAP3K9P80192 1104 aa20.27■□□□□ 0.84
SHOX-204ENST00000554971 ME3Q16798 604 aa20.27■□□□□ 0.84
SHOX-204ENST00000554971 ZSCAN30Q86W11 494 aa20.27■□□□□ 0.84
SHOX-204ENST00000554971 TBC1D10CQ8IV04 446 aa20.27■□□□□ 0.84
SHOX-204ENST00000554971 ANKRD13AQ8IZ07 590 aa20.27■□□□□ 0.84
SHOX-204ENST00000554971 MTMR6Q9Y217 621 aa20.27■□□□□ 0.84
SHOX-204ENST00000554971 PRDM1O75626 825 aa20.27■□□□□ 0.84
SHOX-204ENST00000554971 GDF11O95390 407 aa20.27■□□□□ 0.84
SHOX-204ENST00000554971 CYP21A2P08686 494 aa20.27■□□□□ 0.84
SHOX-204ENST00000554971 CAP2P40123 477 aa20.27■□□□□ 0.84
SHOX-204ENST00000554971 UVSSAQ2YD98 709 aa20.27■□□□□ 0.84
SHOX-204ENST00000554971 CCDC183Q5T5S1 534 aa20.27■□□□□ 0.84
SHOX-204ENST00000554971 CNKSR2Q8WXI2 1034 aa20.27■□□□□ 0.84
SHOX-204ENST00000554971 HMGB1P09429 215 aaKnown RBP20.26■□□□□ 0.83
SHOX-204ENST00000554971 FGRP09769 529 aa20.26■□□□□ 0.83
SHOX-204ENST00000554971 CPA1P15085 419 aa20.26■□□□□ 0.83
SHOX-204ENST00000554971 SWAP70Q9UH65 585 aa20.26■□□□□ 0.83
SHOX-204ENST00000554971 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.26■□□□□ 0.83
SHOX-204ENST00000554971 RASSF10A6NK89 507 aa20.25■□□□□ 0.83
SHOX-204ENST00000554971 CTNND1O60716 968 aaKnown RBP20.25■□□□□ 0.83
SHOX-204ENST00000554971 LARGE1O95461 756 aa20.25■□□□□ 0.83
SHOX-204ENST00000554971 RASA1P20936 1047 aa20.25■□□□□ 0.83
SHOX-204ENST00000554971 NOL9Q5SY16 702 aaKnown RBP20.25■□□□□ 0.83
SHOX-204ENST00000554971 CHAMP1Q96JM3 812 aa20.25■□□□□ 0.83
SHOX-204ENST00000554971 TRIM34Q9BYJ4 488 aa20.25■□□□□ 0.83
SHOX-204ENST00000554971 TPCN1Q9ULQ1 816 aa20.25■□□□□ 0.83
SHOX-204ENST00000554971 CCDC84Q86UT8 332 aaPredicted RBP20.25■□□□□ 0.83
SHOX-204ENST00000554971 ELP3Q9H9T3 547 aa20.25■□□□□ 0.83
SHOX-204ENST00000554971 UNCXA6NJT0 531 aa20.24■□□□□ 0.83
SHOX-204ENST00000554971 ZNF213O14771 459 aa20.24■□□□□ 0.83
SHOX-204ENST00000554971 MCM5P33992 734 aa20.24■□□□□ 0.83
SHOX-204ENST00000554971 CERKLQ49MI3 558 aaPredicted RBP20.24■□□□□ 0.83
SHOX-204ENST00000554971 SCYL3Q8IZE3 742 aa20.24■□□□□ 0.83
SHOX-204ENST00000554971 CHMP4CQ96CF2 233 aa20.24■□□□□ 0.83
SHOX-204ENST00000554971 HHIPL1Q96JK4 782 aa20.24■□□□□ 0.83
SHOX-204ENST00000554971 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.24■□□□□ 0.83
SHOX-204ENST00000554971 CTNNA3Q9UI47 895 aa20.24■□□□□ 0.83
SHOX-204ENST00000554971 AKR1B1P15121 316 aa20.23■□□□□ 0.83
SHOX-204ENST00000554971 GUCY1A2P33402 732 aa20.23■□□□□ 0.83
SHOX-204ENST00000554971 GJA5P36382 358 aa20.23■□□□□ 0.83
SHOX-204ENST00000554971 IMMTQ16891 758 aaKnown RBP20.23■□□□□ 0.83
SHOX-204ENST00000554971 TAOK2Q9UL54 1235 aa20.23■□□□□ 0.83
SHOX-204ENST00000554971 CSADQ9Y600 493 aa20.23■□□□□ 0.83
SHOX-204ENST00000554971 NEDD4P46934 1319 aa20.23■□□□□ 0.83
SHOX-204ENST00000554971 FAM155AB1AL88 458 aaPredicted RBP20.23■□□□□ 0.83
SHOX-204ENST00000554971 GADD45BO75293 160 aaPredicted RBP20.23■□□□□ 0.83
SHOX-204ENST00000554971 GH2P01242 217 aa20.23■□□□□ 0.83
SHOX-204ENST00000554971 LARP1BQ659C4 914 aaKnown RBP20.23■□□□□ 0.83
SHOX-204ENST00000554971 RGMBQ6NW40 437 aa20.23■□□□□ 0.83
SHOX-204ENST00000554971 STAG1Q8WVM7 1258 aa20.23■□□□□ 0.83
SHOX-204ENST00000554971 NEK1Q96PY6 1258 aa20.23■□□□□ 0.83
SHOX-204ENST00000554971 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.23■□□□□ 0.83
SHOX-204ENST00000554971 ZBTB21Q9ULJ3 1066 aa20.23■□□□□ 0.83
SHOX-204ENST00000554971 CNPY2Q9Y2B0 182 aa20.23■□□□□ 0.83
SHOX-204ENST00000554971 ST3GAL1Q11201 340 aa20.22■□□□□ 0.83
SHOX-204ENST00000554971 COL9A3Q14050 684 aaPredicted RBP20.22■□□□□ 0.83
SHOX-204ENST00000554971 AKNAD1Q5T1N1 836 aa20.22■□□□□ 0.83
SHOX-204ENST00000554971 CYP4F22Q6NT55 531 aa20.22■□□□□ 0.83
SHOX-204ENST00000554971 STOX1Q6ZVD7 989 aa20.22■□□□□ 0.83
SHOX-204ENST00000554971 RASAL3Q86YV0 1011 aa20.22■□□□□ 0.83
SHOX-204ENST00000554971 ELP1O95163 1332 aa20.22■□□□□ 0.83
SHOX-204ENST00000554971 MYH4Q9Y623 1939 aa20.21■□□□□ 0.83
SHOX-204ENST00000554971 PTPRAP18433 802 aa20.21■□□□□ 0.83
SHOX-204ENST00000554971 ZNF157P51786 506 aaPredicted RBP20.21■□□□□ 0.83
SHOX-204ENST00000554971 PDE4BQ07343 736 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms