RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 DSCC1Q9BVC3 393 aa17.21■□□□□ 0.35
SHMT2-208ENST00000553868 SEMA6BQ9H3T3 888 aa17.21■□□□□ 0.35
SHMT2-208ENST00000553868 DOCK2Q92608 1830 aa17.21■□□□□ 0.35
SHMT2-208ENST00000553868 MYH13Q9UKX3 1938 aa17.2■□□□□ 0.34
SHMT2-208ENST00000553868 TCRBV5S4A2TA0A5A2 114 aa17.2■□□□□ 0.34
SHMT2-208ENST00000553868 CYP7A1P22680 504 aa17.2■□□□□ 0.34
SHMT2-208ENST00000553868 HSPA4P34932 840 aa17.2■□□□□ 0.34
SHMT2-208ENST00000553868 SEC62Q99442 399 aaKnown RBP17.2■□□□□ 0.34
SHMT2-208ENST00000553868 ZNF341Q9BYN7 854 aa17.2■□□□□ 0.34
SHMT2-208ENST00000553868 SUGT1Q9Y2Z0 365 aa17.2■□□□□ 0.34
SHMT2-208ENST00000553868 DNAH12Q6ZR08 3092 aa17.2■□□□□ 0.34
SHMT2-208ENST00000553868 MYH7P12883 1935 aa17.19■□□□□ 0.34
SHMT2-208ENST00000553868 M0R2C6 588 aa17.19■□□□□ 0.34
SHMT2-208ENST00000553868 LDHCP07864 332 aa17.19■□□□□ 0.34
SHMT2-208ENST00000553868 ZKSCAN1P17029 563 aaPredicted RBP17.19■□□□□ 0.34
SHMT2-208ENST00000553868 GNAT2P19087 354 aa17.19■□□□□ 0.34
SHMT2-208ENST00000553868 LRRC26Q2I0M4 334 aa17.19■□□□□ 0.34
SHMT2-208ENST00000553868 SLF2Q8IX21 1173 aa17.19■□□□□ 0.34
SHMT2-208ENST00000553868 CTNNA3Q9UI47 895 aa17.19■□□□□ 0.34
SHMT2-208ENST00000553868 RBM8AQ9Y5S9 174 aaKnown RBP17.19■□□□□ 0.34
SHMT2-208ENST00000553868 GPAA1O43292 621 aa17.18■□□□□ 0.34
SHMT2-208ENST00000553868 CHGBP05060 677 aa17.18■□□□□ 0.34
SHMT2-208ENST00000553868 PTH1RQ03431 593 aa17.18■□□□□ 0.34
SHMT2-208ENST00000553868 RABEP1Q15276 862 aa17.18■□□□□ 0.34
SHMT2-208ENST00000553868 DCAF15Q66K64 600 aa17.18■□□□□ 0.34
SHMT2-208ENST00000553868 CCDC129Q6ZRS4 1044 aa17.18■□□□□ 0.34
SHMT2-208ENST00000553868 PUS7LQ9H0K6 701 aaKnown RBP17.18■□□□□ 0.34
SHMT2-208ENST00000553868 TTYH1Q9H313 450 aaPredicted RBP17.18■□□□□ 0.34
SHMT2-208ENST00000553868 OGDHLQ9ULD0 1010 aa17.18■□□□□ 0.34
SHMT2-208ENST00000553868 FOSL2P15408 326 aa17.17■□□□□ 0.34
SHMT2-208ENST00000553868 MECOMQ03112 1051 aa17.17■□□□□ 0.34
SHMT2-208ENST00000553868 BECN1Q14457 450 aa17.17■□□□□ 0.34
SHMT2-208ENST00000553868 SLFNL1Q499Z3 407 aa17.17■□□□□ 0.34
SHMT2-208ENST00000553868 TJAP1Q5JTD0 557 aa17.17■□□□□ 0.34
SHMT2-208ENST00000553868 CERS3Q8IU89 383 aa17.17■□□□□ 0.34
SHMT2-208ENST00000553868 USP38Q8NB14 1042 aa17.17■□□□□ 0.34
SHMT2-208ENST00000553868 NSUN4Q96CB9 384 aaKnown RBP17.17■□□□□ 0.34
SHMT2-208ENST00000553868 IL17RAQ96F46 866 aa17.17■□□□□ 0.34
SHMT2-208ENST00000553868 NOL10Q9BSC4 688 aaKnown RBP17.17■□□□□ 0.34
SHMT2-208ENST00000553868 HMX1Q9NP08 348 aaPredicted RBP17.17■□□□□ 0.34
SHMT2-208ENST00000553868 RPAP1Q9BWH6 1393 aaPredicted RBP17.16■□□□□ 0.34
SHMT2-208ENST00000553868 MAST2Q6P0Q8 1798 aa17.16■□□□□ 0.34
SHMT2-208ENST00000553868 MAGEB6P1A0A0J9YX57 407 aa17.16■□□□□ 0.34
SHMT2-208ENST00000553868 HMGCRP04035 888 aa17.16■□□□□ 0.34
SHMT2-208ENST00000553868 HSPD1P10809 573 aaKnown RBP17.16■□□□□ 0.34
SHMT2-208ENST00000553868 PRDX5P30044 214 aa17.16■□□□□ 0.34
SHMT2-208ENST00000553868 ANKRD13CQ8N6S4 541 aa17.16■□□□□ 0.34
SHMT2-208ENST00000553868 COA7Q96BR5 231 aa17.16■□□□□ 0.34
SHMT2-208ENST00000553868 MBD4O95243 580 aa17.15■□□□□ 0.34
SHMT2-208ENST00000553868 KRT32Q14532 448 aa17.15■□□□□ 0.34
SHMT2-208ENST00000553868 NECTIN1Q15223 517 aa17.15■□□□□ 0.34
SHMT2-208ENST00000553868 GADL1Q6ZQY3 521 aa17.15■□□□□ 0.34
SHMT2-208ENST00000553868 FAM83AQ86UY5 434 aa17.15■□□□□ 0.34
SHMT2-208ENST00000553868 KCNB2Q92953 911 aa17.15■□□□□ 0.34
SHMT2-208ENST00000553868 STRBPQ96SI9 672 aaKnown RBP17.15■□□□□ 0.34
SHMT2-208ENST00000553868 NACAP1Q9BZK3 213 aa17.15■□□□□ 0.34
SHMT2-208ENST00000553868 DAXXQ9UER7 740 aaPredicted RBP17.15■□□□□ 0.34
SHMT2-208ENST00000553868 ZNF112Q9UJU3 913 aa17.15■□□□□ 0.34
SHMT2-208ENST00000553868 COL6A1P12109 1028 aa17.14■□□□□ 0.33
SHMT2-208ENST00000553868 CREB3L3Q68CJ9 461 aa17.14■□□□□ 0.33
SHMT2-208ENST00000553868 SMCR8Q8TEV9 937 aaPredicted RBP17.14■□□□□ 0.33
SHMT2-208ENST00000553868 HOOK2Q96ED9 719 aa17.14■□□□□ 0.33
SHMT2-208ENST00000553868 PATL2C9JE40 543 aaKnown RBP17.13■□□□□ 0.33
SHMT2-208ENST00000553868 CXCL11O14625 94 aa17.13■□□□□ 0.33
SHMT2-208ENST00000553868 SLC27A2O14975 620 aa17.13■□□□□ 0.33
SHMT2-208ENST00000553868 ST18O60284 1047 aa17.13■□□□□ 0.33
SHMT2-208ENST00000553868 BAG3O95817 575 aa17.13■□□□□ 0.33
SHMT2-208ENST00000553868 APPP05067 770 aa17.13■□□□□ 0.33
SHMT2-208ENST00000553868 PSMA5P28066 241 aa17.13■□□□□ 0.33
SHMT2-208ENST00000553868 ALX1Q15699 326 aa17.13■□□□□ 0.33
SHMT2-208ENST00000553868 APOBEC3HQ6NTF7 200 aaKnown RBP17.13■□□□□ 0.33
SHMT2-208ENST00000553868 IPO9Q96P70 1041 aaKnown RBP17.13■□□□□ 0.33
SHMT2-208ENST00000553868 KIF2CQ99661 725 aa17.13■□□□□ 0.33
SHMT2-208ENST00000553868 LBHD1Q9BQE6 289 aaPredicted RBP17.13■□□□□ 0.33
SHMT2-208ENST00000553868 ARMT1Q9H993 441 aa17.13■□□□□ 0.33
SHMT2-208ENST00000553868 TMOD2Q9NZR1 351 aa17.13■□□□□ 0.33
SHMT2-208ENST00000553868 SNX14Q9Y5W7 946 aa17.13■□□□□ 0.33
SHMT2-208ENST00000553868 A0A0G2JLL6 359 aaPredicted RBP17.12■□□□□ 0.33
SHMT2-208ENST00000553868 PLCG2P16885 1265 aa17.12■□□□□ 0.33
SHMT2-208ENST00000553868 SHHQ15465 462 aa17.12■□□□□ 0.33
SHMT2-208ENST00000553868 IMMTQ16891 758 aaKnown RBP17.12■□□□□ 0.33
SHMT2-208ENST00000553868 TSGA10IPQ3SY00 556 aa17.12■□□□□ 0.33
SHMT2-208ENST00000553868 NOL9Q5SY16 702 aaKnown RBP17.12■□□□□ 0.33
SHMT2-208ENST00000553868 C9orf50Q5SZB4 431 aa17.12■□□□□ 0.33
SHMT2-208ENST00000553868 VPS53Q5VIR6 699 aa17.12■□□□□ 0.33
SHMT2-208ENST00000553868 PRRT2Q7Z6L0 340 aaPredicted RBP17.12■□□□□ 0.33
SHMT2-208ENST00000553868 MIGA1Q8NAN2 632 aa17.12■□□□□ 0.33
SHMT2-208ENST00000553868 TRIB2Q92519 343 aa17.12■□□□□ 0.33
SHMT2-208ENST00000553868 TEKT1Q969V4 418 aa17.12■□□□□ 0.33
SHMT2-208ENST00000553868 FAM163AQ96GL9 167 aaPredicted RBP17.12■□□□□ 0.33
SHMT2-208ENST00000553868 CRNKL1Q9BZJ0 848 aaKnown RBP17.12■□□□□ 0.33
SHMT2-208ENST00000553868 PALD1Q9ULE6 856 aa17.12■□□□□ 0.33
SHMT2-208ENST00000553868 SLC4A4Q9Y6R1 1079 aa17.12■□□□□ 0.33
SHMT2-208ENST00000553868 ZHX2Q9Y6X8 837 aa17.12■□□□□ 0.33
SHMT2-208ENST00000553868 ZMYM6O95789 1325 aa17.12■□□□□ 0.33
SHMT2-208ENST00000553868 TCP10Q12799 353 aa17.11■□□□□ 0.33
SHMT2-208ENST00000553868 HSCBQ8IWL3 235 aa17.11■□□□□ 0.33
SHMT2-208ENST00000553868 LCORLQ8N3X6 602 aa17.11■□□□□ 0.33
SHMT2-208ENST00000553868 TM6SF1Q9BZW5 370 aa17.11■□□□□ 0.33
SHMT2-208ENST00000553868 GJD2Q9UKL4 321 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms