RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 UBP1Q9NZI7 540 aa5.6□□□□□ -1.51
VRK1-202ENST00000553683 PCDHB14Q9Y5E9 798 aa5.6□□□□□ -1.51
VRK1-202ENST00000553683 OAS3Q9Y6K5 1087 aaKnown RBP5.6□□□□□ -1.51
VRK1-202ENST00000553683 CAPN6Q9Y6Q1 641 aa5.6□□□□□ -1.51
VRK1-202ENST00000553683 SLC22A31A6NKX4 558 aa5.59□□□□□ -1.51
VRK1-202ENST00000553683 FAM155AB1AL88 458 aaPredicted RBP5.59□□□□□ -1.51
VRK1-202ENST00000553683 RGS13O14921 159 aa5.59□□□□□ -1.51
VRK1-202ENST00000553683 TLR3O15455 904 aaKnown RBP5.59□□□□□ -1.51
VRK1-202ENST00000553683 GRIN3BO60391 1043 aa5.59□□□□□ -1.51
VRK1-202ENST00000553683 FUT4P22083 530 aa5.59□□□□□ -1.51
VRK1-202ENST00000553683 AOC3Q16853 763 aa5.59□□□□□ -1.51
VRK1-202ENST00000553683 SEZ6Q53EL9 994 aa5.59□□□□□ -1.51
VRK1-202ENST00000553683 INTS3Q68E01 1043 aaKnown RBP5.59□□□□□ -1.51
VRK1-202ENST00000553683 CDH24Q86UP0 819 aa5.59□□□□□ -1.51
VRK1-202ENST00000553683 WFDC3Q8IUB2 231 aa5.59□□□□□ -1.51
VRK1-202ENST00000553683 FLCNQ8NFG4 579 aa5.59□□□□□ -1.51
VRK1-202ENST00000553683 RASGRP4Q8TDF6 673 aa5.59□□□□□ -1.51
VRK1-202ENST00000553683 ASPNQ9BXN1 380 aa5.59□□□□□ -1.51
VRK1-202ENST00000553683 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.59□□□□□ -1.51
VRK1-202ENST00000553683 CNNM2Q9H8M5 875 aa5.59□□□□□ -1.51
VRK1-202ENST00000553683 KCNH3Q9ULD8 1083 aa5.59□□□□□ -1.51
VRK1-202ENST00000553683 U3KQE9 123 aa5.59□□□□□ -1.51
VRK1-202ENST00000553683 COL17A1Q9UMD9 1497 aaPredicted RBP5.58□□□□□ -1.52
VRK1-202ENST00000553683 PITPNM2Q9BZ72 1349 aa5.58□□□□□ -1.52
VRK1-202ENST00000553683 UPK3BL1B0FP48 263 aa5.58□□□□□ -1.52
VRK1-202ENST00000553683 CHURC1-FNTBB4DL54 471 aa5.58□□□□□ -1.52
VRK1-202ENST00000553683 UPK3BL2E5RIL1 263 aa5.58□□□□□ -1.52
VRK1-202ENST00000553683 RACK1P63244 317 aaKnown RBP5.58□□□□□ -1.52
VRK1-202ENST00000553683 HDLBPQ00341 1268 aaKnown RBP5.58□□□□□ -1.52
VRK1-202ENST00000553683 ZNF394Q53GI3 561 aa5.58□□□□□ -1.52
VRK1-202ENST00000553683 ANGEL2Q5VTE6 544 aaKnown RBP5.58□□□□□ -1.52
VRK1-202ENST00000553683 CBLL1Q75N03 491 aa5.58□□□□□ -1.52
VRK1-202ENST00000553683 TP53INP2Q8IXH6 220 aa5.58□□□□□ -1.52
VRK1-202ENST00000553683 TAB3Q8N5C8 712 aaPredicted RBP5.58□□□□□ -1.52
VRK1-202ENST00000553683 RBBP8NLQ8NC74 664 aaPredicted RBP5.58□□□□□ -1.52
VRK1-202ENST00000553683 TMEM40Q8WWA1 233 aa5.58□□□□□ -1.52
VRK1-202ENST00000553683 DPH2Q9BQC3 489 aaPredicted RBP5.58□□□□□ -1.52
VRK1-202ENST00000553683 TGIF2Q9GZN2 237 aa5.58□□□□□ -1.52
VRK1-202ENST00000553683 ADGRE2Q9UHX3 823 aa5.58□□□□□ -1.52
VRK1-202ENST00000553683 ZNRF3Q9ULT6 936 aa5.58□□□□□ -1.52
VRK1-202ENST00000553683 ST14Q9Y5Y6 855 aa5.58□□□□□ -1.52
VRK1-202ENST00000553683 ITIH2P19823 946 aa5.57□□□□□ -1.52
VRK1-202ENST00000553683 GJA8P48165 433 aa5.57□□□□□ -1.52
VRK1-202ENST00000553683 IRAK1P51617 712 aa5.57□□□□□ -1.52
VRK1-202ENST00000553683 RNF4P78317 190 aa5.57□□□□□ -1.52
VRK1-202ENST00000553683 SLC23A3Q6PIS1 610 aa5.57□□□□□ -1.52
VRK1-202ENST00000553683 TMPRSS7Q7RTY8 843 aa5.57□□□□□ -1.52
VRK1-202ENST00000553683 SPRED2Q7Z698 418 aa5.57□□□□□ -1.52
VRK1-202ENST00000553683 NT5DC4Q86YG4 428 aa5.57□□□□□ -1.52
VRK1-202ENST00000553683 XAGE3Q8WTP9 111 aa5.57□□□□□ -1.52
VRK1-202ENST00000553683 GPR62Q9BZJ7 368 aa5.57□□□□□ -1.52
VRK1-202ENST00000553683 TRIT1Q9H3H1 467 aaKnown RBP5.57□□□□□ -1.52
VRK1-202ENST00000553683 SEMA3GQ9NS98 782 aa5.57□□□□□ -1.52
VRK1-202ENST00000553683 KLHL3Q9UH77 587 aa5.57□□□□□ -1.52
VRK1-202ENST00000553683 CNTNAP4Q9C0A0 1308 aa5.56□□□□□ -1.52
VRK1-202ENST00000553683 TNFRSF10CO14798 259 aa5.56□□□□□ -1.52
VRK1-202ENST00000553683 DNAJA2O60884 412 aa5.56□□□□□ -1.52
VRK1-202ENST00000553683 CD8BP10966 210 aa5.56□□□□□ -1.52
VRK1-202ENST00000553683 SRFP11831 508 aa5.56□□□□□ -1.52
VRK1-202ENST00000553683 RAG1P15918 1043 aa5.56□□□□□ -1.52
VRK1-202ENST00000553683 MCM4P33991 863 aa5.56□□□□□ -1.52
VRK1-202ENST00000553683 CLCQ05315 142 aa5.56□□□□□ -1.52
VRK1-202ENST00000553683 NLRC3Q7RTR2 1065 aa5.56□□□□□ -1.52
VRK1-202ENST00000553683 PHACTR4Q8IZ21 702 aa5.56□□□□□ -1.52
VRK1-202ENST00000553683 ABI1Q8IZP0 508 aa5.56□□□□□ -1.52
VRK1-202ENST00000553683 VWCEQ96DN2 955 aa5.56□□□□□ -1.52
VRK1-202ENST00000553683 ATG4CQ96DT6 458 aa5.56□□□□□ -1.52
VRK1-202ENST00000553683 CCDC120Q96HB5 630 aa5.56□□□□□ -1.52
VRK1-202ENST00000553683 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.56□□□□□ -1.52
VRK1-202ENST00000553683 PCDHGB7Q9Y5F8 929 aa5.56□□□□□ -1.52
VRK1-202ENST00000553683 PRR33A8MZF0 331 aa5.55□□□□□ -1.52
VRK1-202ENST00000553683 CBX7O95931 251 aa5.55□□□□□ -1.52
VRK1-202ENST00000553683 NME1P15531 152 aaKnown RBP5.55□□□□□ -1.52
VRK1-202ENST00000553683 GBP1P32455 592 aa5.55□□□□□ -1.52
VRK1-202ENST00000553683 SOX9P48436 509 aa5.55□□□□□ -1.52
VRK1-202ENST00000553683 TNNI2P48788 182 aa5.55□□□□□ -1.52
VRK1-202ENST00000553683 TNK2Q07912 1038 aa5.55□□□□□ -1.52
VRK1-202ENST00000553683 BNIP3Q12983 259 aa5.55□□□□□ -1.52
VRK1-202ENST00000553683 ARSHQ5FYA8 562 aa5.55□□□□□ -1.52
VRK1-202ENST00000553683 OVOS1Q6IE37 1185 aa5.55□□□□□ -1.52
VRK1-202ENST00000553683 GK5Q6ZS86 529 aa5.55□□□□□ -1.52
VRK1-202ENST00000553683 ENOX1Q8TC92 643 aaKnown RBP5.55□□□□□ -1.52
VRK1-202ENST00000553683 GPRASP2Q96D09 838 aa5.55□□□□□ -1.52
VRK1-202ENST00000553683 SEC16BQ96JE7 1060 aa5.55□□□□□ -1.52
VRK1-202ENST00000553683 Q96M66 194 aa5.55□□□□□ -1.52
VRK1-202ENST00000553683 KREMEN1Q96MU8 473 aa5.55□□□□□ -1.52
VRK1-202ENST00000553683 TM9SF2Q99805 663 aa5.55□□□□□ -1.52
VRK1-202ENST00000553683 PODXL2Q9NZ53 605 aa5.55□□□□□ -1.52
VRK1-202ENST00000553683 JUNBP17275 347 aaPredicted RBP5.54□□□□□ -1.52
VRK1-202ENST00000553683 CHMP4BP1P59074 171 aa5.54□□□□□ -1.52
VRK1-202ENST00000553683 PAK2Q13177 524 aa5.54□□□□□ -1.52
VRK1-202ENST00000553683 PLCL1Q15111 1095 aa5.54□□□□□ -1.52
VRK1-202ENST00000553683 MCTP1Q6DN14 999 aa5.54□□□□□ -1.52
VRK1-202ENST00000553683 DTWD2Q8NBA8 298 aa5.54□□□□□ -1.52
VRK1-202ENST00000553683 OR6P1Q8NGX9 317 aa5.54□□□□□ -1.52
VRK1-202ENST00000553683 BAHD1Q8TBE0 780 aaPredicted RBP5.54□□□□□ -1.52
VRK1-202ENST00000553683 PI4K2BQ8TCG2 481 aa5.54□□□□□ -1.52
VRK1-202ENST00000553683 DHRS1Q96LJ7 313 aa5.54□□□□□ -1.52
VRK1-202ENST00000553683 HSPA12BQ96MM6 686 aa5.54□□□□□ -1.52
VRK1-202ENST00000553683 KIF2CQ99661 725 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms