RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 PTF1AQ7RTS3 328 aa6.2□□□□□ -1.42
VTI1B-202ENST00000553619 ALDH16A1Q8IZ83 802 aa6.2□□□□□ -1.42
VTI1B-202ENST00000553619 ZBTB38Q8NAP3 1195 aaPredicted RBP6.2□□□□□ -1.42
VTI1B-202ENST00000553619 MEIS3Q99687 375 aa6.2□□□□□ -1.42
VTI1B-202ENST00000553619 ISCA1Q9BUE6 129 aa6.2□□□□□ -1.42
VTI1B-202ENST00000553619 PPP1R12CQ9BZL4 782 aa6.2□□□□□ -1.42
VTI1B-202ENST00000553619 NYXQ9GZU5 481 aa6.2□□□□□ -1.42
VTI1B-202ENST00000553619 VRTNQ9H8Y1 702 aa6.2□□□□□ -1.42
VTI1B-202ENST00000553619 TPSG1Q9NRR2 321 aa6.2□□□□□ -1.42
VTI1B-202ENST00000553619 COL15A1P39059 1388 aa6.19□□□□□ -1.42
VTI1B-202ENST00000553619 TJP1Q07157 1748 aa6.19□□□□□ -1.42
VTI1B-202ENST00000553619 MYH14Q7Z406 1995 aaKnown RBP6.19□□□□□ -1.42
VTI1B-202ENST00000553619 RAB11FIP3O75154 756 aa6.19□□□□□ -1.42
VTI1B-202ENST00000553619 CAMTA2O94983 1202 aa6.19□□□□□ -1.42
VTI1B-202ENST00000553619 TPTE2Q6XPS3 522 aa6.19□□□□□ -1.42
VTI1B-202ENST00000553619 BTLAQ7Z6A9 289 aa6.19□□□□□ -1.42
VTI1B-202ENST00000553619 ZNF34Q8IZ26 560 aa6.19□□□□□ -1.42
VTI1B-202ENST00000553619 SCG3Q8WXD2 468 aaKnown RBP6.19□□□□□ -1.42
VTI1B-202ENST00000553619 SETDB2Q96T68 719 aa6.19□□□□□ -1.42
VTI1B-202ENST00000553619 C2orf49Q9BVC5 232 aaPredicted RBP6.19□□□□□ -1.42
VTI1B-202ENST00000553619 UTP14AQ9BVJ6 771 aaKnown RBP6.19□□□□□ -1.42
VTI1B-202ENST00000553619 DCTPP1Q9H773 170 aa6.19□□□□□ -1.42
VTI1B-202ENST00000553619 STK32BQ9NY57 414 aa6.19□□□□□ -1.42
VTI1B-202ENST00000553619 TFCP2L1Q9NZI6 479 aa6.19□□□□□ -1.42
VTI1B-202ENST00000553619 TRMT112Q9UI30 125 aaKnown RBP6.19□□□□□ -1.42
VTI1B-202ENST00000553619 NIP7Q9Y221 180 aaKnown RBP eCLIP6.19□□□□□ -1.42
VTI1B-202ENST00000553619 LRRFIP2Q9Y608 721 aaKnown RBP6.19□□□□□ -1.42
VTI1B-202ENST00000553619 NUP98P52948 1817 aa6.19□□□□□ -1.42
VTI1B-202ENST00000553619 TAF1LQ8IZX4 1826 aa6.19□□□□□ -1.42
VTI1B-202ENST00000553619 AFDNP55196 1824 aaKnown RBP6.18□□□□□ -1.42
VTI1B-202ENST00000553619 FAM196BA6NMK8 535 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 USP17L15C9J2P7 530 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 USP17L10C9JJH3 530 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 USP17L13C9JLJ4 530 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 USP17L12C9JPN9 530 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 USP17L11C9JVI0 530 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 USP17L21D6R901 530 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 USP17L18D6R9N7 530 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 USP17L22D6RA61 530 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 USP17L17D6RBQ6 530 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 USP17L19D6RCP7 530 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 USP17L20D6RJB6 530 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 NPHP1O15259 732 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 PDE8AO60658 829 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 LGR5O75473 907 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 IGHDP01880 384 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 NBPF7P0C2Y1 421 aaPredicted RBP6.18□□□□□ -1.42
VTI1B-202ENST00000553619 USP17L24Q0WX57 530 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 G3BP1Q13283 466 aaKnown RBP eCLIP6.18□□□□□ -1.42
VTI1B-202ENST00000553619 MTX1Q13505 466 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 GRIK4Q16099 956 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 HLFQ16534 295 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 NKAPLQ5M9Q1 402 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 CEP85Q6P2H3 762 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 NLRP10Q86W26 655 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 ERC1Q8IUD2 1116 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 SMC5Q8IY18 1101 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 NLGN1Q8N2Q7 840 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 STAG2Q8N3U4 1231 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 CAMKK2Q96RR4 588 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 PLA2G12BQ9BX93 195 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 UBE2OQ9C0C9 1292 aaKnown RBP6.18□□□□□ -1.42
VTI1B-202ENST00000553619 COL5A3P25940 1745 aaPredicted RBP6.18□□□□□ -1.42
VTI1B-202ENST00000553619 CDHR2Q9BYE9 1310 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 N4BP2Q86UW6 1770 aaPredicted RBP6.18□□□□□ -1.42
VTI1B-202ENST00000553619 ARFGEF2Q9Y6D5 1785 aa6.18□□□□□ -1.42
VTI1B-202ENST00000553619 RREB1Q92766 1687 aa6.17□□□□□ -1.42
VTI1B-202ENST00000553619 SRGAP3O43295 1099 aa6.17□□□□□ -1.42
VTI1B-202ENST00000553619 EPB42P16452 691 aa6.17□□□□□ -1.42
VTI1B-202ENST00000553619 GPTP24298 496 aa6.17□□□□□ -1.42
VTI1B-202ENST00000553619 DPYDQ12882 1025 aa6.17□□□□□ -1.42
VTI1B-202ENST00000553619 CCDC57Q2TAC2 916 aa6.17□□□□□ -1.42
VTI1B-202ENST00000553619 ANKRD45Q5TZF3 282 aa6.17□□□□□ -1.42
VTI1B-202ENST00000553619 USPL1Q5W0Q7 1092 aa6.17□□□□□ -1.42
VTI1B-202ENST00000553619 UBE3BQ7Z3V4 1068 aa6.17□□□□□ -1.42
VTI1B-202ENST00000553619 ANKMY2Q8IV38 441 aa6.17□□□□□ -1.42
VTI1B-202ENST00000553619 SSH3Q8TE77 659 aa6.17□□□□□ -1.42
VTI1B-202ENST00000553619 SUCLG2Q96I99 432 aa6.17□□□□□ -1.42
VTI1B-202ENST00000553619 IGFLR1Q9H665 355 aa6.17□□□□□ -1.42
VTI1B-202ENST00000553619 C1orf115Q9H7X2 142 aa6.17□□□□□ -1.42
VTI1B-202ENST00000553619 SLC6A14Q9UN76 642 aa6.17□□□□□ -1.42
VTI1B-202ENST00000553619 KDM2BQ8NHM5 1336 aa6.17□□□□□ -1.42
VTI1B-202ENST00000553619 SH3TC1Q8TE82 1336 aa6.17□□□□□ -1.42
VTI1B-202ENST00000553619 C4BP0C0L5 1744 aa6.16□□□□□ -1.42
VTI1B-202ENST00000553619 RGPD3A6NKT7 1758 aaPredicted RBP6.16□□□□□ -1.42
VTI1B-202ENST00000553619 RGPD4Q7Z3J3 1758 aa6.16□□□□□ -1.42
VTI1B-202ENST00000553619 IRS4O14654 1257 aaPredicted RBP6.16□□□□□ -1.42
VTI1B-202ENST00000553619 LILRB5O75023 590 aa6.16□□□□□ -1.42
VTI1B-202ENST00000553619 SURF6O75683 361 aaKnown RBP6.16□□□□□ -1.42
VTI1B-202ENST00000553619 OS9Q13438 667 aaPredicted RBP6.16□□□□□ -1.42
VTI1B-202ENST00000553619 EZH2Q15910 746 aaKnown RBP6.16□□□□□ -1.42
VTI1B-202ENST00000553619 SLC15A2Q16348 729 aa6.16□□□□□ -1.42
VTI1B-202ENST00000553619 FOXD4L6Q3SYB3 417 aaPredicted RBP6.16□□□□□ -1.42
VTI1B-202ENST00000553619 RABL6Q3YEC7 729 aaPredicted RBP6.16□□□□□ -1.42
VTI1B-202ENST00000553619 CRTC2Q53ET0 693 aaPredicted RBP6.16□□□□□ -1.42
VTI1B-202ENST00000553619 TAF7LQ5H9L4 462 aa6.16□□□□□ -1.42
VTI1B-202ENST00000553619 SLC10A5Q5PT55 438 aa6.16□□□□□ -1.42
VTI1B-202ENST00000553619 ZMYM1Q5SVZ6 1142 aa6.16□□□□□ -1.42
VTI1B-202ENST00000553619 SUSD4Q5VX71 490 aa6.16□□□□□ -1.42
VTI1B-202ENST00000553619 LMBR1LQ6UX01 489 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms