RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 USP17L11C9JVI0 530 aa17.1■□□□□ 0.33
PRPF39-204ENST00000553605 USP17L18D6R9N7 530 aa17.1■□□□□ 0.33
PRPF39-204ENST00000553605 USP17L22D6RA61 530 aa17.1■□□□□ 0.33
PRPF39-204ENST00000553605 USP17L17D6RBQ6 530 aa17.1■□□□□ 0.33
PRPF39-204ENST00000553605 USP17L19D6RCP7 530 aa17.1■□□□□ 0.33
PRPF39-204ENST00000553605 USP17L20D6RJB6 530 aa17.1■□□□□ 0.33
PRPF39-204ENST00000553605 GDF11O95390 407 aa17.1■□□□□ 0.33
PRPF39-204ENST00000553605 RAG1P15918 1043 aa17.1■□□□□ 0.33
PRPF39-204ENST00000553605 IL15P40933 162 aaPredicted RBP17.1■□□□□ 0.33
PRPF39-204ENST00000553605 TIMM10P62072 90 aa17.1■□□□□ 0.33
PRPF39-204ENST00000553605 USP17L24Q0WX57 530 aa17.1■□□□□ 0.33
PRPF39-204ENST00000553605 SHROOM1Q2M3G4 852 aaPredicted RBP17.1■□□□□ 0.33
PRPF39-204ENST00000553605 AKNAD1Q5T1N1 836 aa17.1■□□□□ 0.33
PRPF39-204ENST00000553605 IL27Q8NEV9 243 aa17.1■□□□□ 0.33
PRPF39-204ENST00000553605 NSUN4Q96CB9 384 aaKnown RBP17.1■□□□□ 0.33
PRPF39-204ENST00000553605 C1QTNF1Q9BXJ1 281 aa17.1■□□□□ 0.33
PRPF39-204ENST00000553605 SEPT4O43236 478 aa17.09■□□□□ 0.33
PRPF39-204ENST00000553605 CLTBP09497 229 aa17.09■□□□□ 0.33
PRPF39-204ENST00000553605 FPGSQ05932 587 aa17.09■□□□□ 0.33
PRPF39-204ENST00000553605 CCDC184Q52MB2 194 aa17.09■□□□□ 0.33
PRPF39-204ENST00000553605 DPP9Q86TI2 863 aa17.09■□□□□ 0.33
PRPF39-204ENST00000553605 FOXP4Q8IVH2 680 aaPredicted RBP17.09■□□□□ 0.33
PRPF39-204ENST00000553605 ZBTB21Q9ULJ3 1066 aa17.09■□□□□ 0.33
PRPF39-204ENST00000553605 KIAA0355O15063 1070 aa17.08■□□□□ 0.32
PRPF39-204ENST00000553605 LRRC41Q15345 812 aa17.08■□□□□ 0.32
PRPF39-204ENST00000553605 OLFML2BQ68BL8 750 aa17.08■□□□□ 0.32
PRPF39-204ENST00000553605 METTL16Q86W50 562 aaKnown RBP17.08■□□□□ 0.32
PRPF39-204ENST00000553605 CRACR2BQ8N4Y2 399 aaPredicted RBP17.08■□□□□ 0.32
PRPF39-204ENST00000553605 SH3RF3Q8TEJ3 882 aaPredicted RBP17.08■□□□□ 0.32
PRPF39-204ENST00000553605 TRIM34Q9BYJ4 488 aa17.08■□□□□ 0.32
PRPF39-204ENST00000553605 DNAJC18Q9H819 358 aa17.08■□□□□ 0.32
PRPF39-204ENST00000553605 BTBD7Q9P203 1132 aa17.08■□□□□ 0.32
PRPF39-204ENST00000553605 ARIH1Q9Y4X5 557 aaPredicted RBP17.08■□□□□ 0.32
PRPF39-204ENST00000553605 SYNGAP1Q96PV0 1343 aa17.07■□□□□ 0.32
PRPF39-204ENST00000553605 CCDC85BQ15834 202 aaPredicted RBP17.07■□□□□ 0.32
PRPF39-204ENST00000553605 CATSPERGQ6ZRH7 1159 aa17.07■□□□□ 0.32
PRPF39-204ENST00000553605 TBC1D9Q6ZT07 1266 aa17.07■□□□□ 0.32
PRPF39-204ENST00000553605 C12orf42Q96LP6 360 aa17.07■□□□□ 0.32
PRPF39-204ENST00000553605 PRDM12Q9H4Q4 367 aa17.07■□□□□ 0.32
PRPF39-204ENST00000553605 RAI14Q9P0K7 980 aa17.07■□□□□ 0.32
PRPF39-204ENST00000553605 PTPRCP08575 1304 aa17.06■□□□□ 0.32
PRPF39-204ENST00000553605 ZYXQ15942 572 aaKnown RBP17.06■□□□□ 0.32
PRPF39-204ENST00000553605 LBX2Q6XYB7 198 aa17.06■□□□□ 0.32
PRPF39-204ENST00000553605 MRPL50Q8N5N7 158 aaKnown RBP17.06■□□□□ 0.32
PRPF39-204ENST00000553605 XAGE2Q96GT9 111 aa17.06■□□□□ 0.32
PRPF39-204ENST00000553605 NOL10Q9BSC4 688 aaKnown RBP17.06■□□□□ 0.32
PRPF39-204ENST00000553605 TMEM39AQ9NV64 488 aa17.06■□□□□ 0.32
PRPF39-204ENST00000553605 HMG20BQ9P0W2 317 aa17.06■□□□□ 0.32
PRPF39-204ENST00000553605 PA2G4Q9UQ80 394 aaKnown RBP17.06■□□□□ 0.32
PRPF39-204ENST00000553605 BDP1A6H8Y1 2624 aa17.05■□□□□ 0.32
PRPF39-204ENST00000553605 ADORA2AP29274 412 aa17.05■□□□□ 0.32
PRPF39-204ENST00000553605 MVPQ14764 893 aaKnown RBP17.05■□□□□ 0.32
PRPF39-204ENST00000553605 PRAMEF19Q5SWL8 479 aa17.05■□□□□ 0.32
PRPF39-204ENST00000553605 FEZ1Q99689 392 aa17.05■□□□□ 0.32
PRPF39-204ENST00000553605 PHF24Q9UPV7 400 aa17.05■□□□□ 0.32
PRPF39-204ENST00000553605 SIPA1L1O43166 1804 aa17.05■□□□□ 0.32
PRPF39-204ENST00000553605 NCOR1O75376 2440 aa17.04■□□□□ 0.32
PRPF39-204ENST00000553605 A0A1B0GUL7 405 aa17.04■□□□□ 0.32
PRPF39-204ENST00000553605 STRNO43815 780 aa17.04■□□□□ 0.32
PRPF39-204ENST00000553605 PQBP1O60828 265 aaKnown RBP17.04■□□□□ 0.32
PRPF39-204ENST00000553605 PBX2P40425 430 aa17.04■□□□□ 0.32
PRPF39-204ENST00000553605 FAM47AQ5JRC9 791 aa17.04■□□□□ 0.32
PRPF39-204ENST00000553605 CCDC129Q6ZRS4 1044 aa17.04■□□□□ 0.32
PRPF39-204ENST00000553605 MAPKAPK5Q8IW41 473 aa17.04■□□□□ 0.32
PRPF39-204ENST00000553605 SPATA5Q8NB90 893 aa17.04■□□□□ 0.32
PRPF39-204ENST00000553605 TGFBRAP1Q8WUH2 860 aa17.04■□□□□ 0.32
PRPF39-204ENST00000553605 NECAB3Q96P71 396 aaPredicted RBP17.04■□□□□ 0.32
PRPF39-204ENST00000553605 PBX4Q9BYU1 374 aa17.04■□□□□ 0.32
PRPF39-204ENST00000553605 PALD1Q9ULE6 856 aa17.04■□□□□ 0.32
PRPF39-204ENST00000553605 HCN4Q9Y3Q4 1203 aa17.04■□□□□ 0.32
PRPF39-204ENST00000553605 BAG3O95817 575 aa17.03■□□□□ 0.32
PRPF39-204ENST00000553605 GH2P01242 217 aa17.03■□□□□ 0.32
PRPF39-204ENST00000553605 IGFBP4P22692 258 aa17.03■□□□□ 0.32
PRPF39-204ENST00000553605 USP14P54578 494 aa17.03■□□□□ 0.32
PRPF39-204ENST00000553605 ADGRE1Q14246 886 aa17.03■□□□□ 0.32
PRPF39-204ENST00000553605 PI16Q6UXB8 463 aa17.03■□□□□ 0.32
PRPF39-204ENST00000553605 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.03■□□□□ 0.32
PRPF39-204ENST00000553605 COPRSQ9NQ92 184 aa17.03■□□□□ 0.32
PRPF39-204ENST00000553605 AATFQ9NY61 560 aaKnown RBP eCLIP17.03■□□□□ 0.32
PRPF39-204ENST00000553605 AKAP2Q9Y2D5 859 aa17.03■□□□□ 0.32
PRPF39-204ENST00000553605 SPDYE16A6NNV3 312 aaPredicted RBP17.02■□□□□ 0.32
PRPF39-204ENST00000553605 GRXCR1A8MXD5 290 aa17.02■□□□□ 0.32
PRPF39-204ENST00000553605 COBLO75128 1261 aa17.02■□□□□ 0.32
PRPF39-204ENST00000553605 UBTFL1P0CB47 393 aaPredicted RBP17.02■□□□□ 0.32
PRPF39-204ENST00000553605 PLCG2P16885 1265 aa17.02■□□□□ 0.32
PRPF39-204ENST00000553605 VCAM1P19320 739 aa17.02■□□□□ 0.32
PRPF39-204ENST00000553605 SLC44A5Q8NCS7 719 aa17.02■□□□□ 0.32
PRPF39-204ENST00000553605 TSPYL2Q9H2G4 693 aaPredicted RBP17.02■□□□□ 0.32
PRPF39-204ENST00000553605 XPNPEP3Q9NQH7 507 aa17.02■□□□□ 0.32
PRPF39-204ENST00000553605 SLC5A4Q9NY91 659 aa17.02■□□□□ 0.32
PRPF39-204ENST00000553605 LRP2BPQ9P2M1 347 aa17.02■□□□□ 0.32
PRPF39-204ENST00000553605 FLT1P17948 1338 aa17.01■□□□□ 0.31
PRPF39-204ENST00000553605 BMP1P13497 986 aa17.01■□□□□ 0.31
PRPF39-204ENST00000553605 FAAP100Q0VG06 881 aa17.01■□□□□ 0.31
PRPF39-204ENST00000553605 ATF7IPQ6VMQ6 1270 aa17.01■□□□□ 0.31
PRPF39-204ENST00000553605 RNF180Q86T96 592 aa17.01■□□□□ 0.31
PRPF39-204ENST00000553605 NEUROD6Q96NK8 337 aa17.01■□□□□ 0.31
PRPF39-204ENST00000553605 LRFN3Q9BTN0 628 aa17.01■□□□□ 0.31
PRPF39-204ENST00000553605 MOV10L1Q9BXT6 1211 aaKnown RBP17.01■□□□□ 0.31
PRPF39-204ENST00000553605 KIAA1683Q9H0B3 1180 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms