RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-208	ENST00000553289	CEP57	Q86XR8	500 aa		12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	NOSTRIN	Q8IVI9	506 aa		12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	DNAJC10	Q8IXB1	793 aa		12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	HAUS7	Q99871	368 aa		12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	RPS6KA1	Q15418	735 aa		12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	PODXL2	Q9NZ53	605 aa		12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	TMEM63C	Q9P1W3	806 aa		12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	CTTNBP2NL	Q9P2B4	639 aa		12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	PARP2	Q9UGN5	583 aa		12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	AATK	Q6ZMQ8	1374 aa		12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	GOLGA6B	A6NDN3	693 aa		12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	CIB2	O75838	187 aa		12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	GSPT1	P15170	499 aa	Known RBP	12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	PPP2R5E	Q16537	467 aa		12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	WHAMMP3	Q1A5X7	153 aa		12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	ERCC6L	Q2NKX8	1250 aa		12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	RSRC1	Q96IZ7	334 aa	Known RBP	12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	CFAP57	Q96MR6	1250 aa		12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	FEZ2	Q9UHY8	353 aa	Predicted RBP	12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	MYOM2	P54296	1465 aa		12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	TMEM2	Q9UHN6	1383 aa		12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	ZBED4	O75132	1171 aa		12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	TAF5L	O75529	589 aa		12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	CMA1	P23946	247 aa		12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	TFAP4	Q01664	338 aa		12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	BRDT	Q58F21	947 aa	Predicted RBP	12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	DPP8	Q6V1X1	898 aa	Predicted RBP	12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	MYL10	Q9BUA6	226 aa		12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	FAM184B	Q9ULE4	1060 aa		12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	KCNJ14	Q9UNX9	436 aa		12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	EXOC3	O60645	756 aa		12.8	□□□□□ -0.36
SYNE2-208	ENST00000553289	MTX1	Q13505	466 aa		12.8	□□□□□ -0.36
SYNE2-208	ENST00000553289	ELF2	Q15723	593 aa		12.8	□□□□□ -0.36
SYNE2-208	ENST00000553289		E7EVH7	732 aa		12.8	□□□□□ -0.36
SYNE2-208	ENST00000553289	PFKFB1	P16118	471 aa		12.8	□□□□□ -0.36
SYNE2-208	ENST00000553289	SP4	Q02446	784 aa		12.8	□□□□□ -0.36
SYNE2-208	ENST00000553289	STMN2	Q93045	179 aa		12.8	□□□□□ -0.36
SYNE2-208	ENST00000553289	KIFC2	Q96AC6	838 aa		12.8	□□□□□ -0.36
SYNE2-208	ENST00000553289	NEO1	Q92859	1461 aa		12.8	□□□□□ -0.36
SYNE2-208	ENST00000553289	RBM6	P78332	1123 aa	Known RBP	12.8	□□□□□ -0.36
SYNE2-208	ENST00000553289	BRD3	Q15059	726 aa		12.8	□□□□□ -0.36
SYNE2-208	ENST00000553289	MYCT1	Q8N699	235 aa		12.8	□□□□□ -0.36
SYNE2-208	ENST00000553289	STAP2	Q9UGK3	403 aa		12.8	□□□□□ -0.36
SYNE2-208	ENST00000553289	SERTAD1	Q9UHV2	236 aa		12.8	□□□□□ -0.36
SYNE2-208	ENST00000553289	CLEC11A	Q9Y240	323 aa		12.8	□□□□□ -0.36
SYNE2-208	ENST00000553289	SAMD9	Q5K651	1589 aa		12.8	□□□□□ -0.36
SYNE2-208	ENST00000553289	CEP104	O60308	925 aa		12.8	□□□□□ -0.36
SYNE2-208	ENST00000553289	CCDC117	Q8IWD4	279 aa	Predicted RBP	12.8	□□□□□ -0.36
SYNE2-208	ENST00000553289	TRIM58	Q8NG06	486 aa		12.8	□□□□□ -0.36
SYNE2-208	ENST00000553289	ORAI2	Q96SN7	254 aa		12.8	□□□□□ -0.36
SYNE2-208	ENST00000553289	DDX23	Q9BUQ8	820 aa	Known RBP	12.8	□□□□□ -0.36
SYNE2-208	ENST00000553289	XPO4	Q9C0E2	1151 aa	Known RBP	12.8	□□□□□ -0.36
SYNE2-208	ENST00000553289	ARHGAP25	P42331	645 aa		12.79	□□□□□ -0.36
SYNE2-208	ENST00000553289	ATP11A	P98196	1134 aa		12.79	□□□□□ -0.36
SYNE2-208	ENST00000553289	LGSN	Q5TDP6	509 aa		12.79	□□□□□ -0.36
SYNE2-208	ENST00000553289	OR8K1	Q8NGG5	319 aa		12.79	□□□□□ -0.36
SYNE2-208	ENST00000553289	MRFAP1L1	Q96HT8	127 aa		12.79	□□□□□ -0.36
SYNE2-208	ENST00000553289	PKD2L1	Q9P0L9	805 aa		12.79	□□□□□ -0.36
SYNE2-208	ENST00000553289	SERPINA10	Q9UK55	444 aa		12.79	□□□□□ -0.36
SYNE2-208	ENST00000553289	CLASP1	Q7Z460	1538 aa		12.79	□□□□□ -0.36
SYNE2-208	ENST00000553289	PSMC4	P43686	418 aa		12.79	□□□□□ -0.36
SYNE2-208	ENST00000553289	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	12.79	□□□□□ -0.36
SYNE2-208	ENST00000553289	IFIH1	Q9BYX4	1025 aa	Known RBP	12.79	□□□□□ -0.36
SYNE2-208	ENST00000553289	RAB17	Q9H0T7	212 aa		12.79	□□□□□ -0.36
SYNE2-208	ENST00000553289	GPR108	Q9NPR9	543 aa		12.79	□□□□□ -0.36
SYNE2-208	ENST00000553289	ODF2L	Q9ULJ1	636 aa		12.79	□□□□□ -0.36
SYNE2-208	ENST00000553289	DDAH1	O94760	285 aa		12.79	□□□□□ -0.36
SYNE2-208	ENST00000553289	HPD	P32754	393 aa	Predicted RBP	12.79	□□□□□ -0.36
SYNE2-208	ENST00000553289	EIF6	P56537	245 aa	Known RBP	12.79	□□□□□ -0.36
SYNE2-208	ENST00000553289	BEND3	Q5T5X7	828 aa		12.79	□□□□□ -0.36
SYNE2-208	ENST00000553289	MRPL44	Q9H9J2	332 aa	Known RBP	12.79	□□□□□ -0.36
SYNE2-208	ENST00000553289	RRAGD	Q9NQL2	400 aa	Predicted RBP	12.79	□□□□□ -0.36
SYNE2-208	ENST00000553289	VPS54	Q9P1Q0	977 aa		12.79	□□□□□ -0.36
SYNE2-208	ENST00000553289	MTMR6	Q9Y217	621 aa		12.79	□□□□□ -0.36
SYNE2-208	ENST00000553289	PCCA	P05165	728 aa	Predicted RBP	12.79	□□□□□ -0.36
SYNE2-208	ENST00000553289	YWHAE	P62258	255 aa	Known RBP	12.79	□□□□□ -0.36
SYNE2-208	ENST00000553289	KRBA2	Q6ZNG9	492 aa		12.79	□□□□□ -0.36
SYNE2-208	ENST00000553289	DYM	Q7RTS9	669 aa		12.79	□□□□□ -0.36
SYNE2-208	ENST00000553289	PEX26	Q7Z412	305 aa		12.79	□□□□□ -0.36
SYNE2-208	ENST00000553289	GOLGA5	Q8TBA6	731 aa		12.79	□□□□□ -0.36
SYNE2-208	ENST00000553289	PNMA2	Q9UL42	364 aa		12.79	□□□□□ -0.36
SYNE2-208	ENST00000553289	GCNT3	O95395	438 aa		12.78	□□□□□ -0.36
SYNE2-208	ENST00000553289	DNM2	P50570	870 aa		12.78	□□□□□ -0.36
SYNE2-208	ENST00000553289	BLID	Q8IZY5	108 aa		12.78	□□□□□ -0.36
SYNE2-208	ENST00000553289	MAGEF1	Q9HAY2	307 aa		12.78	□□□□□ -0.36
SYNE2-208	ENST00000553289	MED23	Q9ULK4	1368 aa		12.78	□□□□□ -0.36
SYNE2-208	ENST00000553289	NOL3	O60936	208 aa	Known RBP	12.78	□□□□□ -0.36
SYNE2-208	ENST00000553289	IFNL3	Q8IZI9	196 aa		12.78	□□□□□ -0.36
SYNE2-208	ENST00000553289	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	12.78	□□□□□ -0.36
SYNE2-208	ENST00000553289	SLF1	Q9BQI6	1058 aa		12.78	□□□□□ -0.36
SYNE2-208	ENST00000553289	STK32B	Q9NY57	414 aa		12.78	□□□□□ -0.36
SYNE2-208	ENST00000553289	ASIC3	Q9UHC3	531 aa		12.78	□□□□□ -0.36
SYNE2-208	ENST00000553289	PBRM1	Q86U86	1689 aa		12.78	□□□□□ -0.36
SYNE2-208	ENST00000553289	SMCO2	A6NFE2	343 aa		12.78	□□□□□ -0.36
SYNE2-208	ENST00000553289	ALDH1B1	P30837	517 aa		12.78	□□□□□ -0.36
SYNE2-208	ENST00000553289	RPS8	P62241	208 aa	Known RBP	12.78	□□□□□ -0.36
SYNE2-208	ENST00000553289	PNOC	Q13519	176 aa		12.78	□□□□□ -0.36
SYNE2-208	ENST00000553289	OSBPL3	Q9H4L5	887 aa		12.78	□□□□□ -0.36
SYNE2-208	ENST00000553289	MKRN1	Q9UHC7	482 aa	Known RBP	12.78	□□□□□ -0.36
SYNE2-208	ENST00000553289	SAR1B	Q9Y6B6	198 aa		12.78	□□□□□ -0.36

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