RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 GLIS2Q9BZE0 524 aaPredicted RBP11.26□□□□□ -0.61
LIMA1-211ENST00000552338 GPBP1L1Q9HC44 474 aaPredicted RBP11.26□□□□□ -0.61
LIMA1-211ENST00000552338 CABP5Q9NP86 173 aa11.26□□□□□ -0.61
LIMA1-211ENST00000552338 LIMCH1Q9UPQ0 1083 aa11.26□□□□□ -0.61
LIMA1-211ENST00000552338 TNKSO95271 1327 aa11.26□□□□□ -0.61
LIMA1-211ENST00000552338 PASKQ96RG2 1323 aa11.26□□□□□ -0.61
LIMA1-211ENST00000552338 ERICH2A1L162 156 aa11.25□□□□□ -0.61
LIMA1-211ENST00000552338 IFIT3O14879 490 aaKnown RBP11.25□□□□□ -0.61
LIMA1-211ENST00000552338 CD2BP2O95400 341 aaKnown RBP11.25□□□□□ -0.61
LIMA1-211ENST00000552338 TTLL1O95922 423 aa11.25□□□□□ -0.61
LIMA1-211ENST00000552338 SLURP2P0DP57 97 aa11.25□□□□□ -0.61
LIMA1-211ENST00000552338 JAG1P78504 1218 aa11.25□□□□□ -0.61
LIMA1-211ENST00000552338 MAP3K9P80192 1104 aa11.25□□□□□ -0.61
LIMA1-211ENST00000552338 TROAPQ12815 778 aa11.25□□□□□ -0.61
LIMA1-211ENST00000552338 WTAPQ15007 396 aa11.25□□□□□ -0.61
LIMA1-211ENST00000552338 SLC4A8Q2Y0W8 1093 aa11.25□□□□□ -0.61
LIMA1-211ENST00000552338 RRP12Q5JTH9 1297 aaKnown RBP11.25□□□□□ -0.61
LIMA1-211ENST00000552338 MIGA2Q7L4E1 593 aa11.25□□□□□ -0.61
LIMA1-211ENST00000552338 SCYL3Q8IZE3 742 aa11.25□□□□□ -0.61
LIMA1-211ENST00000552338 RBM46Q8TBY0 533 aaKnown RBP11.25□□□□□ -0.61
LIMA1-211ENST00000552338 CEP95Q96GE4 821 aa11.25□□□□□ -0.61
LIMA1-211ENST00000552338 UBAC1Q9BSL1 405 aa11.25□□□□□ -0.61
LIMA1-211ENST00000552338 WDR18Q9BV38 432 aa11.25□□□□□ -0.61
LIMA1-211ENST00000552338 SH2B1Q9NRF2 756 aaPredicted RBP11.25□□□□□ -0.61
LIMA1-211ENST00000552338 ZBTB21Q9ULJ3 1066 aa11.25□□□□□ -0.61
LIMA1-211ENST00000552338 SCAF8Q9UPN6 1271 aaKnown RBP11.25□□□□□ -0.61
LIMA1-211ENST00000552338 FAM196BA6NMK8 535 aa11.24□□□□□ -0.61
LIMA1-211ENST00000552338 ABCB7O75027 752 aa11.24□□□□□ -0.61
LIMA1-211ENST00000552338 TOMM70O94826 608 aa11.24□□□□□ -0.61
LIMA1-211ENST00000552338 SNHG28P0DPA3 235 aa11.24□□□□□ -0.61
LIMA1-211ENST00000552338 TOP1P11387 765 aaKnown RBP11.24□□□□□ -0.61
LIMA1-211ENST00000552338 IREB2P48200 963 aaKnown RBP11.24□□□□□ -0.61
LIMA1-211ENST00000552338 CUL4AQ13619 759 aa11.24□□□□□ -0.61
LIMA1-211ENST00000552338 TMEM67Q5HYA8 995 aa11.24□□□□□ -0.61
LIMA1-211ENST00000552338 MAP1SQ66K74 1059 aaPredicted RBP11.24□□□□□ -0.61
LIMA1-211ENST00000552338 APOA5Q6Q788 366 aa11.24□□□□□ -0.61
LIMA1-211ENST00000552338 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.24□□□□□ -0.61
LIMA1-211ENST00000552338 ANKRD13AQ8IZ07 590 aa11.24□□□□□ -0.61
LIMA1-211ENST00000552338 CHMP4CQ96CF2 233 aa11.24□□□□□ -0.61
LIMA1-211ENST00000552338 TOMM22Q9NS69 142 aa11.24□□□□□ -0.61
LIMA1-211ENST00000552338 FOXD4L1Q9NU39 408 aa11.24□□□□□ -0.61
LIMA1-211ENST00000552338 TPCN1Q9ULQ1 816 aa11.24□□□□□ -0.61
LIMA1-211ENST00000552338 CLEC11AQ9Y240 323 aa11.24□□□□□ -0.61
LIMA1-211ENST00000552338 TMX2Q9Y320 296 aa11.24□□□□□ -0.61
LIMA1-211ENST00000552338 K7ELQ4 463 aaPredicted RBP11.23□□□□□ -0.61
LIMA1-211ENST00000552338 PFKFB2O60825 505 aa11.23□□□□□ -0.61
LIMA1-211ENST00000552338 DDAH1O94760 285 aa11.23□□□□□ -0.61
LIMA1-211ENST00000552338 GH2P01242 217 aa11.23□□□□□ -0.61
LIMA1-211ENST00000552338 CALM1P0DP23 149 aa11.23□□□□□ -0.61
LIMA1-211ENST00000552338 CALM2P0DP24 149 aa11.23□□□□□ -0.61
LIMA1-211ENST00000552338 CALM3P0DP25 149 aa11.23□□□□□ -0.61
LIMA1-211ENST00000552338 SMARCA1P28370 1054 aa11.23□□□□□ -0.61
LIMA1-211ENST00000552338 PDIA3P30101 505 aaKnown RBP11.23□□□□□ -0.61
LIMA1-211ENST00000552338 INPP5BP32019 993 aa11.23□□□□□ -0.61
LIMA1-211ENST00000552338 FSTL1Q12841 308 aa11.23□□□□□ -0.61
LIMA1-211ENST00000552338 SEPT2Q15019 361 aa11.23□□□□□ -0.61
LIMA1-211ENST00000552338 IFIT1BQ5T764 474 aaKnown RBP11.23□□□□□ -0.61
LIMA1-211ENST00000552338 PRAMEF18Q5VWM3 479 aa11.23□□□□□ -0.61
LIMA1-211ENST00000552338 CHST3Q7LGC8 479 aa11.23□□□□□ -0.61
LIMA1-211ENST00000552338 ARMC9Q7Z3E5 817 aa11.23□□□□□ -0.61
LIMA1-211ENST00000552338 STK11IPQ8N1F8 1099 aa11.23□□□□□ -0.61
LIMA1-211ENST00000552338 SMC1BQ8NDV3 1235 aa11.23□□□□□ -0.61
LIMA1-211ENST00000552338 GMCL1P1Q8NEA9 526 aa11.23□□□□□ -0.61
LIMA1-211ENST00000552338 BRF1Q92994 677 aa11.23□□□□□ -0.61
LIMA1-211ENST00000552338 TCEANC2Q96MN5 208 aa11.23□□□□□ -0.61
LIMA1-211ENST00000552338 TMEM47Q9BQJ4 181 aa11.23□□□□□ -0.61
LIMA1-211ENST00000552338 BRPF3Q9ULD4 1205 aa11.23□□□□□ -0.61
LIMA1-211ENST00000552338 HPS5Q9UPZ3 1129 aa11.23□□□□□ -0.61
LIMA1-211ENST00000552338 USP17L5A8MUK1 530 aa11.22□□□□□ -0.61
LIMA1-211ENST00000552338 NMT2O60551 498 aa11.22□□□□□ -0.61
LIMA1-211ENST00000552338 PTPRAP18433 802 aa11.22□□□□□ -0.61
LIMA1-211ENST00000552338 ME3Q16798 604 aa11.22□□□□□ -0.61
LIMA1-211ENST00000552338 PARP14Q460N5 1801 aa11.22□□□□□ -0.61
LIMA1-211ENST00000552338 SH3D19Q5HYK7 790 aa11.22□□□□□ -0.61
LIMA1-211ENST00000552338 CST9Q5W186 159 aa11.22□□□□□ -0.61
LIMA1-211ENST00000552338 ZNF784Q8NCA9 323 aaPredicted RBP11.22□□□□□ -0.61
LIMA1-211ENST00000552338 RGS22Q8NE09 1264 aa11.22□□□□□ -0.61
LIMA1-211ENST00000552338 INTS4Q96HW7 963 aaKnown RBP11.22□□□□□ -0.61
LIMA1-211ENST00000552338 TMX3Q96JJ7 454 aa11.22□□□□□ -0.61
LIMA1-211ENST00000552338 C12orf42Q96LP6 360 aa11.22□□□□□ -0.61
LIMA1-211ENST00000552338 WRNIP1Q96S55 665 aa11.22□□□□□ -0.61
LIMA1-211ENST00000552338 ZKSCAN3Q9BRR0 538 aa11.22□□□□□ -0.61
LIMA1-211ENST00000552338 LRRC2Q9BYS8 371 aa11.22□□□□□ -0.61
LIMA1-211ENST00000552338 KIAA1683Q9H0B3 1180 aa11.22□□□□□ -0.61
LIMA1-211ENST00000552338 SENP2Q9HC62 589 aa11.22□□□□□ -0.61
LIMA1-211ENST00000552338 GPHNQ9NQX3 736 aaPredicted RBP11.22□□□□□ -0.61
LIMA1-211ENST00000552338 SNCAIPQ9Y6H5 919 aa11.22□□□□□ -0.61
LIMA1-211ENST00000552338 MYH6P13533 1939 aa11.21□□□□□ -0.61
LIMA1-211ENST00000552338 A0A1W2PRG0 241 aa11.21□□□□□ -0.61
LIMA1-211ENST00000552338 C19orf81C9J6K1 198 aa11.21□□□□□ -0.61
LIMA1-211ENST00000552338 PLA2G6O60733 806 aa11.21□□□□□ -0.61
LIMA1-211ENST00000552338 GDF11O95390 407 aa11.21□□□□□ -0.61
LIMA1-211ENST00000552338 EEF2P13639 858 aaKnown RBP11.21□□□□□ -0.61
LIMA1-211ENST00000552338 YY1P25490 414 aa11.21□□□□□ -0.61
LIMA1-211ENST00000552338 ICA1Q05084 483 aa11.21□□□□□ -0.61
LIMA1-211ENST00000552338 PPATQ06203 517 aa11.21□□□□□ -0.61
LIMA1-211ENST00000552338 APOBRQ0VD83 1088 aa11.21□□□□□ -0.61
LIMA1-211ENST00000552338 DLK2Q6UY11 383 aa11.21□□□□□ -0.61
LIMA1-211ENST00000552338 ZNF654Q8IZM8 581 aa11.21□□□□□ -0.61
LIMA1-211ENST00000552338 PNMA1Q8ND90 353 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms