RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 ADGRE1Q14246 886 aa17.92■□□□□ 0.46
VPS29-209ENST00000551655 GRB14Q14449 540 aa17.92■□□□□ 0.46
VPS29-209ENST00000551655 PRAMEF19Q5SWL8 479 aa17.92■□□□□ 0.46
VPS29-209ENST00000551655 PI16Q6UXB8 463 aa17.92■□□□□ 0.46
VPS29-209ENST00000551655 TBC1D9Q6ZT07 1266 aa17.92■□□□□ 0.46
VPS29-209ENST00000551655 TEX11Q8IYF3 940 aa17.92■□□□□ 0.46
VPS29-209ENST00000551655 SH3RF3Q8TEJ3 882 aaPredicted RBP17.92■□□□□ 0.46
VPS29-209ENST00000551655 GAS2L1Q99501 681 aaPredicted RBP17.92■□□□□ 0.46
VPS29-209ENST00000551655 ZBTB21Q9ULJ3 1066 aa17.92■□□□□ 0.46
VPS29-209ENST00000551655 PA2G4Q9UQ80 394 aaKnown RBP17.92■□□□□ 0.46
VPS29-209ENST00000551655 RABGAP1Q9Y3P9 1069 aa17.92■□□□□ 0.46
VPS29-209ENST00000551655 CDK5RAP2Q96SN8 1893 aa17.92■□□□□ 0.46
VPS29-209ENST00000551655 GLRX3O76003 335 aaKnown RBP17.91■□□□□ 0.46
VPS29-209ENST00000551655 CLTBP09497 229 aa17.91■□□□□ 0.46
VPS29-209ENST00000551655 TIMM10P62072 90 aa17.91■□□□□ 0.46
VPS29-209ENST00000551655 LRRC41Q15345 812 aa17.91■□□□□ 0.46
VPS29-209ENST00000551655 FAM47AQ5JRC9 791 aa17.91■□□□□ 0.46
VPS29-209ENST00000551655 SPTY2D1Q68D10 685 aaPredicted RBP17.91■□□□□ 0.46
VPS29-209ENST00000551655 GTF3C2Q8WUA4 911 aaPredicted RBP17.91■□□□□ 0.46
VPS29-209ENST00000551655 MYO9BQ13459 2157 aa17.91■□□□□ 0.46
VPS29-209ENST00000551655 CIAO1O76071 339 aa17.9■□□□□ 0.46
VPS29-209ENST00000551655 RAG1P15918 1043 aa17.9■□□□□ 0.46
VPS29-209ENST00000551655 CCNA1P78396 465 aa17.9■□□□□ 0.46
VPS29-209ENST00000551655 FPGSQ05932 587 aa17.9■□□□□ 0.46
VPS29-209ENST00000551655 WDR63Q8IWG1 891 aa17.9■□□□□ 0.46
VPS29-209ENST00000551655 NSUN4Q96CB9 384 aaKnown RBP17.9■□□□□ 0.46
VPS29-209ENST00000551655 PI4KBQ9UBF8 816 aa17.9■□□□□ 0.46
VPS29-209ENST00000551655 TACC3Q9Y6A5 838 aa17.9■□□□□ 0.46
VPS29-209ENST00000551655 IVNS1ABPQ9Y6Y0 642 aa17.9■□□□□ 0.46
VPS29-209ENST00000551655 PQBP1O60828 265 aaKnown RBP17.89■□□□□ 0.45
VPS29-209ENST00000551655 AKNAD1Q5T1N1 836 aa17.89■□□□□ 0.45
VPS29-209ENST00000551655 USP17L2Q6R6M4 530 aa17.89■□□□□ 0.45
VPS29-209ENST00000551655 PBX4Q9BYU1 374 aa17.89■□□□□ 0.45
VPS29-209ENST00000551655 PDS5AQ29RF7 1337 aaKnown RBP17.89■□□□□ 0.45
VPS29-209ENST00000551655 SYNGAP1Q96PV0 1343 aa17.89■□□□□ 0.45
VPS29-209ENST00000551655 KIAA0355O15063 1070 aa17.88■□□□□ 0.45
VPS29-209ENST00000551655 SEPT4O43236 478 aa17.88■□□□□ 0.45
VPS29-209ENST00000551655 IGFBP4P22692 258 aa17.88■□□□□ 0.45
VPS29-209ENST00000551655 C1orf53Q5VUE5 145 aa17.88■□□□□ 0.45
VPS29-209ENST00000551655 MAPKAPK5Q8IW41 473 aa17.88■□□□□ 0.45
VPS29-209ENST00000551655 IL27Q8NEV9 243 aa17.88■□□□□ 0.45
VPS29-209ENST00000551655 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.88■□□□□ 0.45
VPS29-209ENST00000551655 ZNF236Q9UL36 1845 aa17.88■□□□□ 0.45
VPS29-209ENST00000551655 USP17L15C9J2P7 530 aa17.87■□□□□ 0.45
VPS29-209ENST00000551655 USP17L13C9JLJ4 530 aa17.87■□□□□ 0.45
VPS29-209ENST00000551655 USP17L11C9JVI0 530 aa17.87■□□□□ 0.45
VPS29-209ENST00000551655 USP17L18D6R9N7 530 aa17.87■□□□□ 0.45
VPS29-209ENST00000551655 USP17L22D6RA61 530 aa17.87■□□□□ 0.45
VPS29-209ENST00000551655 USP17L17D6RBQ6 530 aa17.87■□□□□ 0.45
VPS29-209ENST00000551655 USP17L19D6RCP7 530 aa17.87■□□□□ 0.45
VPS29-209ENST00000551655 USP17L20D6RJB6 530 aa17.87■□□□□ 0.45
VPS29-209ENST00000551655 ADORA2AP29274 412 aa17.87■□□□□ 0.45
VPS29-209ENST00000551655 USP17L24Q0WX57 530 aa17.87■□□□□ 0.45
VPS29-209ENST00000551655 CCDC129Q6ZRS4 1044 aa17.87■□□□□ 0.45
VPS29-209ENST00000551655 DPP9Q86TI2 863 aa17.87■□□□□ 0.45
VPS29-209ENST00000551655 CRACR2BQ8N4Y2 399 aaPredicted RBP17.87■□□□□ 0.45
VPS29-209ENST00000551655 LRFN3Q9BTN0 628 aa17.87■□□□□ 0.45
VPS29-209ENST00000551655 C1QTNF1Q9BXJ1 281 aa17.87■□□□□ 0.45
VPS29-209ENST00000551655 EPHX3Q9H6B9 360 aa17.87■□□□□ 0.45
VPS29-209ENST00000551655 RAI14Q9P0K7 980 aa17.87■□□□□ 0.45
VPS29-209ENST00000551655 HMG20BQ9P0W2 317 aa17.87■□□□□ 0.45
VPS29-209ENST00000551655 PALD1Q9ULE6 856 aa17.87■□□□□ 0.45
VPS29-209ENST00000551655 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.87■□□□□ 0.45
VPS29-209ENST00000551655 FOCADQ5VW36 1801 aa17.86■□□□□ 0.45
VPS29-209ENST00000551655 GBF1Q92538 1859 aa17.86■□□□□ 0.45
VPS29-209ENST00000551655 SMCHD1A6NHR9 2005 aa17.86■□□□□ 0.45
VPS29-209ENST00000551655 ZBTB22O15209 634 aa17.86■□□□□ 0.45
VPS29-209ENST00000551655 COBLO75128 1261 aa17.86■□□□□ 0.45
VPS29-209ENST00000551655 GH2P01242 217 aa17.86■□□□□ 0.45
VPS29-209ENST00000551655 TFF2Q03403 129 aa17.86■□□□□ 0.45
VPS29-209ENST00000551655 CATSPERGQ6ZRH7 1159 aa17.86■□□□□ 0.45
VPS29-209ENST00000551655 MRPL50Q8N5N7 158 aaKnown RBP17.86■□□□□ 0.45
VPS29-209ENST00000551655 XAGE2Q96GT9 111 aa17.86■□□□□ 0.45
VPS29-209ENST00000551655 FEZ1Q99689 392 aa17.86■□□□□ 0.45
VPS29-209ENST00000551655 TMEM39AQ9NV64 488 aa17.86■□□□□ 0.45
VPS29-209ENST00000551655 SAP30BPQ9UHR5 308 aaKnown RBP17.86■□□□□ 0.45
VPS29-209ENST00000551655 PHF24Q9UPV7 400 aa17.86■□□□□ 0.45
VPS29-209ENST00000551655 A0A1B0GUL7 405 aa17.85■□□□□ 0.45
VPS29-209ENST00000551655 SPDYE16A6NNV3 312 aaPredicted RBP17.85■□□□□ 0.45
VPS29-209ENST00000551655 LDHCP07864 332 aa17.85■□□□□ 0.45
VPS29-209ENST00000551655 BMP1P13497 986 aa17.85■□□□□ 0.45
VPS29-209ENST00000551655 IL15P40933 162 aaPredicted RBP17.85■□□□□ 0.45
VPS29-209ENST00000551655 KCNQ1P51787 676 aa17.85■□□□□ 0.45
VPS29-209ENST00000551655 GSTO1P78417 241 aa17.85■□□□□ 0.45
VPS29-209ENST00000551655 OLFML2BQ68BL8 750 aa17.85■□□□□ 0.45
VPS29-209ENST00000551655 TGFBRAP1Q8WUH2 860 aa17.85■□□□□ 0.45
VPS29-209ENST00000551655 C12orf42Q96LP6 360 aa17.85■□□□□ 0.45
VPS29-209ENST00000551655 AATFQ9NY61 560 aaKnown RBP eCLIP17.85■□□□□ 0.45
VPS29-209ENST00000551655 HCN4Q9Y3Q4 1203 aa17.85■□□□□ 0.45
VPS29-209ENST00000551655 FLT1P17948 1338 aa17.84■□□□□ 0.45
VPS29-209ENST00000551655 MAP4K4O95819 1239 aaPredicted RBP17.84■□□□□ 0.45
VPS29-209ENST00000551655 PGK1P00558 417 aa17.84■□□□□ 0.45
VPS29-209ENST00000551655 VCAM1P19320 739 aa17.84■□□□□ 0.45
VPS29-209ENST00000551655 FAAP100Q0VG06 881 aa17.84■□□□□ 0.45
VPS29-209ENST00000551655 C16orf59Q7L2K0 433 aa17.84■□□□□ 0.45
VPS29-209ENST00000551655 METTL16Q86W50 562 aaKnown RBP17.84■□□□□ 0.45
VPS29-209ENST00000551655 ACER1Q8TDN7 264 aa17.84■□□□□ 0.45
VPS29-209ENST00000551655 LENG1Q96BZ8 264 aaPredicted RBP17.84■□□□□ 0.45
VPS29-209ENST00000551655 TRIM34Q9BYJ4 488 aa17.84■□□□□ 0.45
VPS29-209ENST00000551655 DHX36Q9H2U1 1008 aaKnown RBP17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms