RNA–Protein interactions for RNA: ENST00000551355.5

NEK3-203, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 727 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-203ENST00000551355 ZKSCAN3Q9BRR0 538 aa12.17□□□□□ -0.46
NEK3-203ENST00000551355 IL17RBQ9NRM6 502 aa12.17□□□□□ -0.46
NEK3-203ENST00000551355 RNF216Q9NWF9 866 aaPredicted RBP12.17□□□□□ -0.46
NEK3-203ENST00000551355 BAZ2AQ9UIF9 1905 aaKnown RBP12.17□□□□□ -0.46
NEK3-203ENST00000551355 SCN4AP35499 1836 aa12.16□□□□□ -0.46
NEK3-203ENST00000551355 MYH1P12882 1939 aa12.16□□□□□ -0.46
NEK3-203ENST00000551355 GOLGA8BA8MQT2 603 aa12.16□□□□□ -0.46
NEK3-203ENST00000551355 CDKL5O76039 1030 aa12.16□□□□□ -0.46
NEK3-203ENST00000551355 CAP2P40123 477 aa12.16□□□□□ -0.46
NEK3-203ENST00000551355 METAP2P50579 478 aaKnown RBP eCLIP12.16□□□□□ -0.46
NEK3-203ENST00000551355 EAPPQ56P03 285 aaPredicted RBP12.16□□□□□ -0.46
NEK3-203ENST00000551355 ZNF654Q8IZM8 581 aa12.16□□□□□ -0.46
NEK3-203ENST00000551355 GTF3C6Q969F1 213 aa12.16□□□□□ -0.46
NEK3-203ENST00000551355 CEP95Q96GE4 821 aa12.16□□□□□ -0.46
NEK3-203ENST00000551355 RBM28Q9NW13 759 aaKnown RBP12.16□□□□□ -0.46
NEK3-203ENST00000551355 NYAP2Q9P242 653 aa12.16□□□□□ -0.46
NEK3-203ENST00000551355 BRPF3Q9ULD4 1205 aa12.16□□□□□ -0.46
NEK3-203ENST00000551355 NAP1L2Q9ULW6 460 aaPredicted RBP12.16□□□□□ -0.46
NEK3-203ENST00000551355 STX8Q9UNK0 236 aa12.16□□□□□ -0.46
NEK3-203ENST00000551355 KIF3AQ9Y496 699 aa12.16□□□□□ -0.46
NEK3-203ENST00000551355 CDK5RAP2Q96SN8 1893 aa12.16□□□□□ -0.46
NEK3-203ENST00000551355 NID2Q14112 1375 aa12.16□□□□□ -0.46
NEK3-203ENST00000551355 PHF20L1A8MW92 1017 aa12.15□□□□□ -0.46
NEK3-203ENST00000551355 CPLX1O14810 134 aa12.15□□□□□ -0.46
NEK3-203ENST00000551355 PPP1R12BO60237 982 aaPredicted RBP12.15□□□□□ -0.46
NEK3-203ENST00000551355 KIF5BP33176 963 aa12.15□□□□□ -0.46
NEK3-203ENST00000551355 GNAQP50148 359 aa12.15□□□□□ -0.46
NEK3-203ENST00000551355 HMGN5P82970 282 aaKnown RBP12.15□□□□□ -0.46
NEK3-203ENST00000551355 NBPF12Q5TAG4 269 aaPredicted RBP12.15□□□□□ -0.46
NEK3-203ENST00000551355 RCSD1Q6JBY9 416 aa12.15□□□□□ -0.46
NEK3-203ENST00000551355 MIGA2Q7L4E1 593 aa12.15□□□□□ -0.46
NEK3-203ENST00000551355 USP48Q86UV5 1035 aa12.15□□□□□ -0.46
NEK3-203ENST00000551355 LDHDQ86WU2 507 aa12.15□□□□□ -0.46
NEK3-203ENST00000551355 FANCBQ8NB91 859 aa12.15□□□□□ -0.46
NEK3-203ENST00000551355 NKX2-3Q8TAU0 364 aa12.15□□□□□ -0.46
NEK3-203ENST00000551355 MKL1Q969V6 931 aa12.15□□□□□ -0.46
NEK3-203ENST00000551355 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.15□□□□□ -0.46
NEK3-203ENST00000551355 SH2D4AQ9H788 454 aa12.15□□□□□ -0.46
NEK3-203ENST00000551355 RRAGCQ9HB90 399 aa12.15□□□□□ -0.46
NEK3-203ENST00000551355 GPHNQ9NQX3 736 aaPredicted RBP12.15□□□□□ -0.46
NEK3-203ENST00000551355 ZNF112Q9UJU3 913 aa12.15□□□□□ -0.46
NEK3-203ENST00000551355 CLEC11AQ9Y240 323 aa12.15□□□□□ -0.46
NEK3-203ENST00000551355 UNCXA6NJT0 531 aa12.14□□□□□ -0.47
NEK3-203ENST00000551355 FAM196BA6NMK8 535 aa12.14□□□□□ -0.47
NEK3-203ENST00000551355 GOLGA8AA7E2F4 631 aa12.14□□□□□ -0.47
NEK3-203ENST00000551355 NMT2O60551 498 aa12.14□□□□□ -0.47
NEK3-203ENST00000551355 GH2P01242 217 aa12.14□□□□□ -0.47
NEK3-203ENST00000551355 ICA1Q05084 483 aa12.14□□□□□ -0.47
NEK3-203ENST00000551355 TROAPQ12815 778 aa12.14□□□□□ -0.47
NEK3-203ENST00000551355 MICU3Q86XE3 530 aa12.14□□□□□ -0.47
NEK3-203ENST00000551355 CCDC83Q8IWF9 413 aa12.14□□□□□ -0.47
NEK3-203ENST00000551355 PNMA1Q8ND90 353 aa12.14□□□□□ -0.47
NEK3-203ENST00000551355 CTCFLQ8NI51 663 aaPredicted RBP12.14□□□□□ -0.47
NEK3-203ENST00000551355 TMEM47Q9BQJ4 181 aa12.14□□□□□ -0.47
NEK3-203ENST00000551355 LZTS2Q9BRK4 669 aa12.14□□□□□ -0.47
NEK3-203ENST00000551355 LARP6Q9BRS8 491 aaKnown RBP12.14□□□□□ -0.47
NEK3-203ENST00000551355 ARHGEF10LQ9HCE6 1279 aa12.14□□□□□ -0.47
NEK3-203ENST00000551355 ZBTB21Q9ULJ3 1066 aa12.14□□□□□ -0.47
NEK3-203ENST00000551355 HPS5Q9UPZ3 1129 aa12.14□□□□□ -0.47
NEK3-203ENST00000551355 SMC3Q9UQE7 1217 aa12.14□□□□□ -0.47
NEK3-203ENST00000551355 LARGE1O95461 756 aa12.13□□□□□ -0.47
NEK3-203ENST00000551355 PDCP20941 246 aa12.13□□□□□ -0.47
NEK3-203ENST00000551355 IREB2P48200 963 aaKnown RBP12.13□□□□□ -0.47
NEK3-203ENST00000551355 SLC4A3P48751 1232 aa12.13□□□□□ -0.47
NEK3-203ENST00000551355 SCRN1Q12765 414 aa12.13□□□□□ -0.47
NEK3-203ENST00000551355 STK3Q13188 491 aa12.13□□□□□ -0.47
NEK3-203ENST00000551355 RAB3GAP1Q15042 981 aa12.13□□□□□ -0.47
NEK3-203ENST00000551355 RTN1Q16799 776 aa12.13□□□□□ -0.47
NEK3-203ENST00000551355 CDAN1Q8IWY9 1227 aa12.13□□□□□ -0.47
NEK3-203ENST00000551355 KLRG1Q96E93 195 aa12.13□□□□□ -0.47
NEK3-203ENST00000551355 PICK1Q9NRD5 415 aa12.13□□□□□ -0.47
NEK3-203ENST00000551355 CLIP2Q9UDT6 1046 aa12.13□□□□□ -0.47
NEK3-203ENST00000551355 CIZ1Q9ULV3 898 aaPredicted RBP12.13□□□□□ -0.47
NEK3-203ENST00000551355 ADM5C9JUS6 153 aa12.12□□□□□ -0.47
NEK3-203ENST00000551355 GDF11O95390 407 aa12.12□□□□□ -0.47
NEK3-203ENST00000551355 EEF2P13639 858 aaKnown RBP12.12□□□□□ -0.47
NEK3-203ENST00000551355 SMARCA1P28370 1054 aa12.12□□□□□ -0.47
NEK3-203ENST00000551355 CCT2P78371 535 aaKnown RBP12.12□□□□□ -0.47
NEK3-203ENST00000551355 SEPT2Q15019 361 aa12.12□□□□□ -0.47
NEK3-203ENST00000551355 NOL9Q5SY16 702 aaKnown RBP12.12□□□□□ -0.47
NEK3-203ENST00000551355 SCYL3Q8IZE3 742 aa12.12□□□□□ -0.47
NEK3-203ENST00000551355 NECAB1Q8N987 351 aa12.12□□□□□ -0.47
NEK3-203ENST00000551355 RGS22Q8NE09 1264 aa12.12□□□□□ -0.47
NEK3-203ENST00000551355 GMCL1P1Q8NEA9 526 aa12.12□□□□□ -0.47
NEK3-203ENST00000551355 NUP133Q8WUM0 1156 aa12.12□□□□□ -0.47
NEK3-203ENST00000551355 CDCA5Q96FF9 252 aa12.12□□□□□ -0.47
NEK3-203ENST00000551355 WRNIP1Q96S55 665 aa12.12□□□□□ -0.47
NEK3-203ENST00000551355 AS3MTQ9HBK9 375 aa12.12□□□□□ -0.47
NEK3-203ENST00000551355 SENP2Q9HC62 589 aa12.12□□□□□ -0.47
NEK3-203ENST00000551355 RBM27Q9P2N5 1060 aaKnown RBP12.12□□□□□ -0.47
NEK3-203ENST00000551355 SCAF8Q9UPN6 1271 aaKnown RBP12.12□□□□□ -0.47
NEK3-203ENST00000551355 UTRNP46939 3433 aa12.11□□□□□ -0.47
NEK3-203ENST00000551355 USP17L5A8MUK1 530 aa12.11□□□□□ -0.47
NEK3-203ENST00000551355 PARP1P09874 1014 aaKnown RBP12.11□□□□□ -0.47
NEK3-203ENST00000551355 IFNAR1P17181 557 aa12.11□□□□□ -0.47
NEK3-203ENST00000551355 GUCY1A2P33402 732 aa12.11□□□□□ -0.47
NEK3-203ENST00000551355 FKBP1BP68106 108 aa12.11□□□□□ -0.47
NEK3-203ENST00000551355 MAP3K9P80192 1104 aa12.11□□□□□ -0.47
NEK3-203ENST00000551355 GRM4Q14833 912 aa12.11□□□□□ -0.47
NEK3-203ENST00000551355 MAP3K11Q16584 847 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms