RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 GNL3LQ9NVN8 582 aaKnown RBP13.07□□□□□ -0.32
VPS29-208ENST00000550267 DENND2AQ9ULE3 1009 aa13.07□□□□□ -0.32
VPS29-208ENST00000550267 RPTORQ8N122 1335 aa13.07□□□□□ -0.32
VPS29-208ENST00000550267 PTPRFP10586 1907 aa13.06□□□□□ -0.32
VPS29-208ENST00000550267 DDX60LQ5H9U9 1706 aaKnown RBP13.06□□□□□ -0.32
VPS29-208ENST00000550267 FAM196BA6NMK8 535 aa13.06□□□□□ -0.32
VPS29-208ENST00000550267 UBE2OQ9C0C9 1292 aaKnown RBP13.06□□□□□ -0.32
VPS29-208ENST00000550267 NPDC1Q9NQX5 325 aaPredicted RBP13.06□□□□□ -0.32
VPS29-208ENST00000550267 GJD2Q9UKL4 321 aa13.06□□□□□ -0.32
VPS29-208ENST00000550267 SEMA3EO15041 775 aa13.05□□□□□ -0.32
VPS29-208ENST00000550267 BTDP43251 543 aa13.05□□□□□ -0.32
VPS29-208ENST00000550267 SPP2Q13103 211 aa13.05□□□□□ -0.32
VPS29-208ENST00000550267 DZIP1Q86YF9 867 aaKnown RBP13.05□□□□□ -0.32
VPS29-208ENST00000550267 PROCA1Q8NCQ7 364 aaPredicted RBP13.05□□□□□ -0.32
VPS29-208ENST00000550267 TRIB2Q92519 343 aa13.05□□□□□ -0.32
VPS29-208ENST00000550267 ZNF516Q92618 1163 aa13.05□□□□□ -0.32
VPS29-208ENST00000550267 COL25A1Q9BXS0 654 aaPredicted RBP13.05□□□□□ -0.32
VPS29-208ENST00000550267 CEP126Q9P2H0 1117 aa13.05□□□□□ -0.32
VPS29-208ENST00000550267 OGDHLQ9ULD0 1010 aa13.05□□□□□ -0.32
VPS29-208ENST00000550267 V9GY48 417 aaPredicted RBP13.05□□□□□ -0.32
VPS29-208ENST00000550267 RNF40O75150 1001 aa13.04□□□□□ -0.32
VPS29-208ENST00000550267 ADORA1P30542 326 aa13.04□□□□□ -0.32
VPS29-208ENST00000550267 GCLCP48506 637 aaPredicted RBP13.04□□□□□ -0.32
VPS29-208ENST00000550267 HMGCS2P54868 508 aa13.04□□□□□ -0.32
VPS29-208ENST00000550267 ZGPATQ8N5A5 531 aaKnown RBP13.04□□□□□ -0.32
VPS29-208ENST00000550267 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.04□□□□□ -0.32
VPS29-208ENST00000550267 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.04□□□□□ -0.32
VPS29-208ENST00000550267 ABCF2Q9UG63 623 aa13.04□□□□□ -0.32
VPS29-208ENST00000550267 PFASO15067 1338 aa13.04□□□□□ -0.32
VPS29-208ENST00000550267 PTPRCP08575 1304 aa13.04□□□□□ -0.32
VPS29-208ENST00000550267 LOC285556D6RIA3 1793 aa13.03□□□□□ -0.32
VPS29-208ENST00000550267 CIAO1O76071 339 aa13.03□□□□□ -0.32
VPS29-208ENST00000550267 CYP2B6P20813 491 aa13.03□□□□□ -0.32
VPS29-208ENST00000550267 RHBDL3P58872 404 aa13.03□□□□□ -0.32
VPS29-208ENST00000550267 PABPC4Q13310 644 aaKnown RBP eCLIP13.03□□□□□ -0.32
VPS29-208ENST00000550267 CCDC102BQ68D86 513 aa13.03□□□□□ -0.32
VPS29-208ENST00000550267 ZNF280CQ8ND82 737 aa13.03□□□□□ -0.32
VPS29-208ENST00000550267 OSBPL5Q9H0X9 879 aaPredicted RBP13.03□□□□□ -0.32
VPS29-208ENST00000550267 ASCC2Q9H1I8 757 aaPredicted RBP13.03□□□□□ -0.32
VPS29-208ENST00000550267 MROH7-TTC4A0A0A0MT08 1334 aa13.03□□□□□ -0.32
VPS29-208ENST00000550267 MYH2Q9UKX2 1941 aa13.02□□□□□ -0.32
VPS29-208ENST00000550267 PEX10O60683 326 aa13.02□□□□□ -0.33
VPS29-208ENST00000550267 RASGRF1Q13972 1273 aa13.02□□□□□ -0.33
VPS29-208ENST00000550267 RRP1BQ14684 758 aaKnown RBP13.02□□□□□ -0.33
VPS29-208ENST00000550267 MAP3K21Q5TCX8 1036 aa13.02□□□□□ -0.33
VPS29-208ENST00000550267 TRAF7Q6Q0C0 670 aa13.02□□□□□ -0.33
VPS29-208ENST00000550267 PADI6Q6TGC4 694 aa13.02□□□□□ -0.33
VPS29-208ENST00000550267 SLF2Q8IX21 1173 aa13.02□□□□□ -0.33
VPS29-208ENST00000550267 MORF4L1Q9UBU8 362 aa13.02□□□□□ -0.33
VPS29-208ENST00000550267 PA2G4Q9UQ80 394 aaKnown RBP13.02□□□□□ -0.33
VPS29-208ENST00000550267 PLXNB2O15031 1838 aa13.02□□□□□ -0.33
VPS29-208ENST00000550267 LCE2BO14633 110 aa13.01□□□□□ -0.33
VPS29-208ENST00000550267 COL6A1P12109 1028 aa13.01□□□□□ -0.33
VPS29-208ENST00000550267 CAP2P40123 477 aa13.01□□□□□ -0.33
VPS29-208ENST00000550267 MDM2Q00987 491 aaPredicted RBP13.01□□□□□ -0.33
VPS29-208ENST00000550267 MECOMQ03112 1051 aa13.01□□□□□ -0.33
VPS29-208ENST00000550267 SWT1Q5T5J6 900 aaKnown RBP13.01□□□□□ -0.33
VPS29-208ENST00000550267 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.01□□□□□ -0.33
VPS29-208ENST00000550267 ZNF384Q8TF68 577 aa13.01□□□□□ -0.33
VPS29-208ENST00000550267 GPR75-ASB3A0A0A6YYF3 556 aa13□□□□□ -0.33
VPS29-208ENST00000550267 USP17L5A8MUK1 530 aa13□□□□□ -0.33
VPS29-208ENST00000550267 NRG2O14511 850 aaPredicted RBP13□□□□□ -0.33
VPS29-208ENST00000550267 IL15P40933 162 aaPredicted RBP13□□□□□ -0.33
VPS29-208ENST00000550267 TIMM10P62072 90 aa13□□□□□ -0.33
VPS29-208ENST00000550267 LRRC26Q2I0M4 334 aa13□□□□□ -0.33
VPS29-208ENST00000550267 SH3D19Q5HYK7 790 aa13□□□□□ -0.33
VPS29-208ENST00000550267 SPTY2D1Q68D10 685 aaPredicted RBP13□□□□□ -0.33
VPS29-208ENST00000550267 SSH1Q8WYL5 1049 aa13□□□□□ -0.33
VPS29-208ENST00000550267 NUDT12Q9BQG2 462 aa13□□□□□ -0.33
VPS29-208ENST00000550267 TBC1D2Q9BYX2 928 aa13□□□□□ -0.33
VPS29-208ENST00000550267 PDS5AQ29RF7 1337 aaKnown RBP12.99□□□□□ -0.33
VPS29-208ENST00000550267 UBTFL1P0CB47 393 aaPredicted RBP12.99□□□□□ -0.33
VPS29-208ENST00000550267 ZKSCAN1P17029 563 aaPredicted RBP12.99□□□□□ -0.33
VPS29-208ENST00000550267 CCND3P30281 292 aaPredicted RBP12.99□□□□□ -0.33
VPS29-208ENST00000550267 IRX3P78415 501 aaPredicted RBP12.99□□□□□ -0.33
VPS29-208ENST00000550267 CACNB2Q08289 660 aaPredicted RBP12.99□□□□□ -0.33
VPS29-208ENST00000550267 ERICH6Q7L0X2 663 aa12.99□□□□□ -0.33
VPS29-208ENST00000550267 FAM161BQ96MY7 647 aa12.99□□□□□ -0.33
VPS29-208ENST00000550267 GUCD1Q96NT3 240 aa12.99□□□□□ -0.33
VPS29-208ENST00000550267 AS3MTQ9HBK9 375 aa12.99□□□□□ -0.33
VPS29-208ENST00000550267 TXNRD2Q9NNW7 524 aa12.99□□□□□ -0.33
VPS29-208ENST00000550267 COL2A1P02458 1487 aaPredicted RBP12.98□□□□□ -0.33
VPS29-208ENST00000550267 DOCK3Q8IZD9 2030 aa12.98□□□□□ -0.33
VPS29-208ENST00000550267 MTMR2Q13614 643 aa12.98□□□□□ -0.33
VPS29-208ENST00000550267 CCL14Q16627 93 aa12.98□□□□□ -0.33
VPS29-208ENST00000550267 SOCS4Q8WXH5 440 aa12.98□□□□□ -0.33
VPS29-208ENST00000550267 P2RX7Q99572 595 aaKnown RBP12.98□□□□□ -0.33
VPS29-208ENST00000550267 ATAD5Q96QE3 1844 aa12.97□□□□□ -0.33
VPS29-208ENST00000550267 ZNF521Q96K83 1311 aa12.97□□□□□ -0.33
VPS29-208ENST00000550267 XRCC5P13010 732 aaKnown RBP12.97□□□□□ -0.33
VPS29-208ENST00000550267 HERVK_113P62684 666 aa12.97□□□□□ -0.33
VPS29-208ENST00000550267 JAG1P78504 1218 aa12.97□□□□□ -0.33
VPS29-208ENST00000550267 TRMT44Q8IYL2 757 aaKnown RBP12.97□□□□□ -0.33
VPS29-208ENST00000550267 FAM9BQ8IZU0 186 aa12.97□□□□□ -0.33
VPS29-208ENST00000550267 GPRC5AQ8NFJ5 357 aa12.97□□□□□ -0.33
VPS29-208ENST00000550267 USP6NLQ92738 828 aa12.97□□□□□ -0.33
VPS29-208ENST00000550267 XAGE2Q96GT9 111 aa12.97□□□□□ -0.33
VPS29-208ENST00000550267 A0A0C4DFX4 3053 aa12.97□□□□□ -0.33
VPS29-208ENST00000550267 A0A1B0GUL7 405 aa12.96□□□□□ -0.33
VPS29-208ENST00000550267 HOXA7P31268 230 aaPredicted RBP12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms