RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 C11orf49Q9H6J7 331 aa8.64□□□□□ -1.03
DEPDC4-208ENST00000549341 CNNM1Q9NRU3 951 aa8.64□□□□□ -1.03
DEPDC4-208ENST00000549341 RBM19Q9Y4C8 960 aaKnown RBP8.64□□□□□ -1.03
DEPDC4-208ENST00000549341 CDH23Q9H251 3354 aa8.63□□□□□ -1.03
DEPDC4-208ENST00000549341 UTYO14607 1347 aa8.63□□□□□ -1.03
DEPDC4-208ENST00000549341 RNF223E7ERA6 249 aa8.63□□□□□ -1.03
DEPDC4-208ENST00000549341 SRGAP3O43295 1099 aa8.63□□□□□ -1.03
DEPDC4-208ENST00000549341 FRAT2O75474 233 aaPredicted RBP8.63□□□□□ -1.03
DEPDC4-208ENST00000549341 HIBADHP31937 336 aaKnown RBP8.63□□□□□ -1.03
DEPDC4-208ENST00000549341 OS9Q13438 667 aaPredicted RBP8.63□□□□□ -1.03
DEPDC4-208ENST00000549341 MOGSQ13724 837 aa8.63□□□□□ -1.03
DEPDC4-208ENST00000549341 GADL1Q6ZQY3 521 aa8.63□□□□□ -1.03
DEPDC4-208ENST00000549341 VPS37DQ86XT2 251 aa8.63□□□□□ -1.03
DEPDC4-208ENST00000549341 SIRT2Q8IXJ6 389 aa8.63□□□□□ -1.03
DEPDC4-208ENST00000549341 MAFAQ8NHW3 353 aaPredicted RBP8.63□□□□□ -1.03
DEPDC4-208ENST00000549341 BACH2Q9BYV9 841 aa8.63□□□□□ -1.03
DEPDC4-208ENST00000549341 LRRCC1Q9C099 1032 aa8.63□□□□□ -1.03
DEPDC4-208ENST00000549341 RAPGEFL1Q9UHV5 662 aa8.63□□□□□ -1.03
DEPDC4-208ENST00000549341 KCNH4Q9UQ05 1017 aa8.63□□□□□ -1.03
DEPDC4-208ENST00000549341 RPAP1Q9BWH6 1393 aaPredicted RBP8.62□□□□□ -1.03
DEPDC4-208ENST00000549341 HMGCRP04035 888 aa8.62□□□□□ -1.03
DEPDC4-208ENST00000549341 CSF1RP07333 972 aa8.62□□□□□ -1.03
DEPDC4-208ENST00000549341 CASP7P55210 303 aa8.62□□□□□ -1.03
DEPDC4-208ENST00000549341 TCP10Q12799 353 aa8.62□□□□□ -1.03
DEPDC4-208ENST00000549341 MTX1Q13505 466 aa8.62□□□□□ -1.03
DEPDC4-208ENST00000549341 ZNF697Q5TEC3 545 aa8.62□□□□□ -1.03
DEPDC4-208ENST00000549341 GPAT2Q6NUI2 795 aa8.62□□□□□ -1.03
DEPDC4-208ENST00000549341 CASC1Q6TDU7 716 aa8.62□□□□□ -1.03
DEPDC4-208ENST00000549341 TDRD7Q8NHU6 1098 aaKnown RBP8.62□□□□□ -1.03
DEPDC4-208ENST00000549341 SSH3Q8TE77 659 aa8.62□□□□□ -1.03
DEPDC4-208ENST00000549341 PXYLP1Q8TE99 480 aa8.62□□□□□ -1.03
DEPDC4-208ENST00000549341 COA7Q96BR5 231 aa8.62□□□□□ -1.03
DEPDC4-208ENST00000549341 KIF1BPQ96EK5 621 aa8.62□□□□□ -1.03
DEPDC4-208ENST00000549341 ARIH1Q9Y4X5 557 aaPredicted RBP8.62□□□□□ -1.03
DEPDC4-208ENST00000549341 PCDHB3Q9Y5E6 796 aa8.62□□□□□ -1.03
DEPDC4-208ENST00000549341 ARAP2Q8WZ64 1704 aa8.61□□□□□ -1.03
DEPDC4-208ENST00000549341 SURF6O75683 361 aaKnown RBP8.61□□□□□ -1.03
DEPDC4-208ENST00000549341 NBPF7P0C2Y1 421 aaPredicted RBP8.61□□□□□ -1.03
DEPDC4-208ENST00000549341 TRIM32Q13049 653 aa8.61□□□□□ -1.03
DEPDC4-208ENST00000549341 G3BP1Q13283 466 aaKnown RBP eCLIP8.61□□□□□ -1.03
DEPDC4-208ENST00000549341 IRF5Q13568 498 aa8.61□□□□□ -1.03
DEPDC4-208ENST00000549341 CCDC57Q2TAC2 916 aa8.61□□□□□ -1.03
DEPDC4-208ENST00000549341 LDHAL6AQ6ZMR3 332 aa8.61□□□□□ -1.03
DEPDC4-208ENST00000549341 FAM83AQ86UY5 434 aa8.61□□□□□ -1.03
DEPDC4-208ENST00000549341 ANKRD13CQ8N6S4 541 aa8.61□□□□□ -1.03
DEPDC4-208ENST00000549341 ANKLE1Q8NAG6 615 aa8.61□□□□□ -1.03
DEPDC4-208ENST00000549341 TTC13Q8NBP0 860 aa8.61□□□□□ -1.03
DEPDC4-208ENST00000549341 GPATCH3Q96I76 525 aa8.61□□□□□ -1.03
DEPDC4-208ENST00000549341 PICK1Q9NRD5 415 aa8.61□□□□□ -1.03
DEPDC4-208ENST00000549341 PFASO15067 1338 aa8.6□□□□□ -1.03
DEPDC4-208ENST00000549341 ECM29Q5VYK3 1845 aa8.6□□□□□ -1.03
DEPDC4-208ENST00000549341 TRIM75PA6NK02 468 aa8.6□□□□□ -1.03
DEPDC4-208ENST00000549341 BMP2KLQ5H9B9 411 aa8.6□□□□□ -1.03
DEPDC4-208ENST00000549341 APOBEC3HQ6NTF7 200 aaKnown RBP8.6□□□□□ -1.03
DEPDC4-208ENST00000549341 LMBR1LQ6UX01 489 aa8.6□□□□□ -1.03
DEPDC4-208ENST00000549341 TREML4Q6UXN2 200 aa8.6□□□□□ -1.03
DEPDC4-208ENST00000549341 ZDHHC15Q96MV8 337 aa8.6□□□□□ -1.03
DEPDC4-208ENST00000549341 ZHX2Q9Y6X8 837 aa8.6□□□□□ -1.03
DEPDC4-208ENST00000549341 TMEM265A0A087WTH1 108 aa8.59□□□□□ -1.03
DEPDC4-208ENST00000549341 A0A0G2JLL6 359 aaPredicted RBP8.59□□□□□ -1.03
DEPDC4-208ENST00000549341 PNMA6EA0A0J9YXQ4 647 aa8.59□□□□□ -1.03
DEPDC4-208ENST00000549341 APBB1O00213 710 aa8.59□□□□□ -1.03
DEPDC4-208ENST00000549341 FOXO4P98177 505 aa8.59□□□□□ -1.03
DEPDC4-208ENST00000549341 NFIAQ12857 509 aa8.59□□□□□ -1.03
DEPDC4-208ENST00000549341 E2F4Q16254 413 aa8.59□□□□□ -1.03
DEPDC4-208ENST00000549341 NOL9Q5SY16 702 aaKnown RBP8.59□□□□□ -1.03
DEPDC4-208ENST00000549341 FASTKD5Q7L8L6 764 aaKnown RBP8.59□□□□□ -1.03
DEPDC4-208ENST00000549341 PRRT2Q7Z6L0 340 aaPredicted RBP8.59□□□□□ -1.03
DEPDC4-208ENST00000549341 CCDC84Q86UT8 332 aaPredicted RBP8.59□□□□□ -1.03
DEPDC4-208ENST00000549341 CLASRPQ8N2M8 674 aaKnown RBP8.59□□□□□ -1.03
DEPDC4-208ENST00000549341 TBC1D22AQ8WUA7 517 aa8.59□□□□□ -1.03
DEPDC4-208ENST00000549341 MYLIPQ8WY64 445 aa8.59□□□□□ -1.03
DEPDC4-208ENST00000549341 DDRGK1Q96HY6 314 aa8.59□□□□□ -1.03
DEPDC4-208ENST00000549341 SUCLG2Q96I99 432 aa8.59□□□□□ -1.03
DEPDC4-208ENST00000549341 FAM84BQ96KN1 310 aaPredicted RBP8.59□□□□□ -1.03
DEPDC4-208ENST00000549341 CDX2Q99626 313 aaPredicted RBP8.59□□□□□ -1.03
DEPDC4-208ENST00000549341 LBHD1Q9BQE6 289 aaPredicted RBP8.59□□□□□ -1.03
DEPDC4-208ENST00000549341 HMX1Q9NP08 348 aaPredicted RBP8.59□□□□□ -1.03
DEPDC4-208ENST00000549341 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.59□□□□□ -1.03
DEPDC4-208ENST00000549341 EXOC6BQ9Y2D4 811 aa8.59□□□□□ -1.03
DEPDC4-208ENST00000549341 NOP58Q9Y2X3 529 aaKnown RBP8.59□□□□□ -1.03
DEPDC4-208ENST00000549341 MAST3O60307 1309 aa8.58□□□□□ -1.04
DEPDC4-208ENST00000549341 CXCL11O14625 94 aa8.58□□□□□ -1.04
DEPDC4-208ENST00000549341 FOSL2P15408 326 aa8.58□□□□□ -1.04
DEPDC4-208ENST00000549341 CAPN2P17655 700 aa8.58□□□□□ -1.04
DEPDC4-208ENST00000549341 HDLBPQ00341 1268 aaKnown RBP8.58□□□□□ -1.04
DEPDC4-208ENST00000549341 UBE4AQ14139 1066 aa8.58□□□□□ -1.04
DEPDC4-208ENST00000549341 LRRC26Q2I0M4 334 aa8.58□□□□□ -1.04
DEPDC4-208ENST00000549341 EPHA10Q5JZY3 1008 aa8.58□□□□□ -1.04
DEPDC4-208ENST00000549341 FKBP1CQ5VVH2 108 aa8.58□□□□□ -1.04
DEPDC4-208ENST00000549341 FAM109BQ6ICB4 259 aaPredicted RBP8.58□□□□□ -1.04
DEPDC4-208ENST00000549341 SCYL3Q8IZE3 742 aa8.58□□□□□ -1.04
DEPDC4-208ENST00000549341 PUS3Q9BZE2 481 aaKnown RBP8.58□□□□□ -1.04
DEPDC4-208ENST00000549341 BICC1Q9H694 974 aaKnown RBP8.58□□□□□ -1.04
DEPDC4-208ENST00000549341 CDHR5Q9HBB8 845 aa8.58□□□□□ -1.04
DEPDC4-208ENST00000549341 FAM187AA6NFU0 413 aa8.57□□□□□ -1.04
DEPDC4-208ENST00000549341 ERC2O15083 957 aa8.57□□□□□ -1.04
DEPDC4-208ENST00000549341 PTPRAP18433 802 aa8.57□□□□□ -1.04
DEPDC4-208ENST00000549341 DIXDC1Q155Q3 683 aa8.57□□□□□ -1.04
DEPDC4-208ENST00000549341 FAM110CQ1W6H9 321 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms