RNA–Protein interactions for RNA: ENST00000549308.5

PTPRR-209, Transcript of protein tyrosine phosphatase, receptor type R, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRR, Length 1,603 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRR-209ENST00000549308 RBM28Q9NW13 759 aaKnown RBP14.08□□□□□ -0.15
PTPRR-209ENST00000549308 GPRC5DQ9NZD1 345 aa14.08□□□□□ -0.15
PTPRR-209ENST00000549308 ORC3Q9UBD5 711 aaPredicted RBP14.08□□□□□ -0.15
PTPRR-209ENST00000549308 STX8Q9UNK0 236 aa14.08□□□□□ -0.15
PTPRR-209ENST00000549308 ZSCAN22P10073 491 aaPredicted RBP14.08□□□□□ -0.16
PTPRR-209ENST00000549308 FOSBP53539 338 aa14.08□□□□□ -0.16
PTPRR-209ENST00000549308 TNFAIP1Q13829 316 aa14.08□□□□□ -0.16
PTPRR-209ENST00000549308 PPP2R5BQ15173 497 aa14.08□□□□□ -0.16
PTPRR-209ENST00000549308 NFKBIBQ15653 356 aa14.08□□□□□ -0.16
PTPRR-209ENST00000549308 CERKLQ49MI3 558 aaPredicted RBP14.08□□□□□ -0.16
PTPRR-209ENST00000549308 METTL16Q86W50 562 aaKnown RBP14.08□□□□□ -0.16
PTPRR-209ENST00000549308 PNMA1Q8ND90 353 aa14.08□□□□□ -0.16
PTPRR-209ENST00000549308 CTCFLQ8NI51 663 aaPredicted RBP14.08□□□□□ -0.16
PTPRR-209ENST00000549308 CEP95Q96GE4 821 aa14.08□□□□□ -0.16
PTPRR-209ENST00000549308 GBP4Q96PP9 640 aa14.08□□□□□ -0.16
PTPRR-209ENST00000549308 TMEM39BQ9GZU3 492 aa14.08□□□□□ -0.16
PTPRR-209ENST00000549308 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.08□□□□□ -0.16
PTPRR-209ENST00000549308 HACL1Q9UJ83 578 aa14.08□□□□□ -0.16
PTPRR-209ENST00000549308 H3BQV1 296 aa14.07□□□□□ -0.16
PTPRR-209ENST00000549308 GRIN3BO60391 1043 aa14.07□□□□□ -0.16
PTPRR-209ENST00000549308 DDNO94850 711 aaPredicted RBP14.07□□□□□ -0.16
PTPRR-209ENST00000549308 LMOD1P29536 600 aaPredicted RBP14.07□□□□□ -0.16
PTPRR-209ENST00000549308 SSRP1Q08945 709 aaKnown RBP14.07□□□□□ -0.16
PTPRR-209ENST00000549308 TROAPQ12815 778 aa14.07□□□□□ -0.16
PTPRR-209ENST00000549308 IFFO2Q5TF58 517 aa14.07□□□□□ -0.16
PTPRR-209ENST00000549308 TMEM47Q9BQJ4 181 aa14.07□□□□□ -0.16
PTPRR-209ENST00000549308 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.07□□□□□ -0.16
PTPRR-209ENST00000549308 HERC5Q9UII4 1024 aaKnown RBP14.07□□□□□ -0.16
PTPRR-209ENST00000549308 MTMR6Q9Y217 621 aa14.07□□□□□ -0.16
PTPRR-209ENST00000549308 IGKV6D-41A0A0C4DH26 115 aa14.06□□□□□ -0.16
PTPRR-209ENST00000549308 TOP1P11387 765 aaKnown RBP14.06□□□□□ -0.16
PTPRR-209ENST00000549308 FDPSP14324 419 aaKnown RBP14.06□□□□□ -0.16
PTPRR-209ENST00000549308 RASA3Q14644 834 aa14.06□□□□□ -0.16
PTPRR-209ENST00000549308 NTRK3Q16288 839 aa14.06□□□□□ -0.16
PTPRR-209ENST00000549308 PPP4R3BQ5MIZ7 849 aa14.06□□□□□ -0.16
PTPRR-209ENST00000549308 TATDN1Q6P1N9 297 aa14.06□□□□□ -0.16
PTPRR-209ENST00000549308 TRPM4Q8TD43 1214 aa14.06□□□□□ -0.16
PTPRR-209ENST00000549308 PHKBQ93100 1093 aa14.06□□□□□ -0.16
PTPRR-209ENST00000549308 SLC26A6Q9BXS9 759 aa14.06□□□□□ -0.16
PTPRR-209ENST00000549308 MTMR4Q9NYA4 1195 aa14.06□□□□□ -0.16
PTPRR-209ENST00000549308 MTMR7Q9Y216 660 aa14.06□□□□□ -0.16
PTPRR-209ENST00000549308 ASTN2O75129 1339 aaPredicted RBP14.06□□□□□ -0.16
PTPRR-209ENST00000549308 SOCS7O14512 581 aa14.05□□□□□ -0.16
PTPRR-209ENST00000549308 FMNL1O95466 1100 aaPredicted RBP14.05□□□□□ -0.16
PTPRR-209ENST00000549308 F13A1P00488 732 aa14.05□□□□□ -0.16
PTPRR-209ENST00000549308 IFNAR1P17181 557 aa14.05□□□□□ -0.16
PTPRR-209ENST00000549308 EPS15P42566 896 aa14.05□□□□□ -0.16
PTPRR-209ENST00000549308 NBR1Q14596 966 aa14.05□□□□□ -0.16
PTPRR-209ENST00000549308 ABCB5Q2M3G0 1257 aa14.05□□□□□ -0.16
PTPRR-209ENST00000549308 TRIM22Q8IYM9 498 aa14.05□□□□□ -0.16
PTPRR-209ENST00000549308 SCAF8Q9UPN6 1271 aaKnown RBP14.05□□□□□ -0.16
PTPRR-209ENST00000549308 STK36Q9NRP7 1315 aa14.05□□□□□ -0.16
PTPRR-209ENST00000549308 GDF11O95390 407 aa14.04□□□□□ -0.16
PTPRR-209ENST00000549308 KIF5BP33176 963 aa14.04□□□□□ -0.16
PTPRR-209ENST00000549308 ATP2B2Q01814 1243 aa14.04□□□□□ -0.16
PTPRR-209ENST00000549308 DPY19L2Q6NUT2 758 aa14.04□□□□□ -0.16
PTPRR-209ENST00000549308 CDC37L1Q7L3B6 337 aa14.04□□□□□ -0.16
PTPRR-209ENST00000549308 APOBEC3FQ8IUX4 373 aaKnown RBP14.04□□□□□ -0.16
PTPRR-209ENST00000549308 CCDC82Q8N4S0 544 aa14.04□□□□□ -0.16
PTPRR-209ENST00000549308 MAP3K14Q99558 947 aa14.04□□□□□ -0.16
PTPRR-209ENST00000549308 CABP5Q9NP86 173 aa14.04□□□□□ -0.16
PTPRR-209ENST00000549308 CLIP2Q9UDT6 1046 aa14.04□□□□□ -0.16
PTPRR-209ENST00000549308 GREB1LQ9C091 1923 aaPredicted RBP14.04□□□□□ -0.16
PTPRR-209ENST00000549308 PLEKHA8P1O95397 391 aa14.04□□□□□ -0.16
PTPRR-209ENST00000549308 BAG4O95429 457 aaKnown RBP14.04□□□□□ -0.16
PTPRR-209ENST00000549308 TTLL1O95922 423 aa14.04□□□□□ -0.16
PTPRR-209ENST00000549308 MCM4P33991 863 aa14.04□□□□□ -0.16
PTPRR-209ENST00000549308 NOVP48745 357 aa14.04□□□□□ -0.16
PTPRR-209ENST00000549308 AKAP17AQ02040 695 aaKnown RBP14.04□□□□□ -0.16
PTPRR-209ENST00000549308 GRM4Q14833 912 aa14.04□□□□□ -0.16
PTPRR-209ENST00000549308 ANGEL2Q5VTE6 544 aaKnown RBP14.04□□□□□ -0.16
PTPRR-209ENST00000549308 TMEM179Q6ZVK1 233 aa14.04□□□□□ -0.16
PTPRR-209ENST00000549308 TMTC3Q6ZXV5 915 aa14.04□□□□□ -0.16
PTPRR-209ENST00000549308 CLEC10AQ8IUN9 316 aa14.04□□□□□ -0.16
PTPRR-209ENST00000549308 CDAN1Q8IWY9 1227 aa14.04□□□□□ -0.16
PTPRR-209ENST00000549308 CMTR1Q8N1G2 835 aaKnown RBP14.04□□□□□ -0.16
PTPRR-209ENST00000549308 WASF1Q92558 559 aa14.04□□□□□ -0.16
PTPRR-209ENST00000549308 C8orf76Q96K31 380 aa14.04□□□□□ -0.16
PTPRR-209ENST00000549308 ALG1Q9BT22 464 aa14.04□□□□□ -0.16
PTPRR-209ENST00000549308 TBC1D12O60347 775 aa14.03□□□□□ -0.16
PTPRR-209ENST00000549308 GNAQP50148 359 aa14.03□□□□□ -0.16
PTPRR-209ENST00000549308 MIGA2Q7L4E1 593 aa14.03□□□□□ -0.16
PTPRR-209ENST00000549308 NBPF11Q86T75 865 aa14.03□□□□□ -0.16
PTPRR-209ENST00000549308 LRRC47Q8N1G4 583 aaKnown RBP14.03□□□□□ -0.16
PTPRR-209ENST00000549308 ADARB2Q9NS39 739 aaKnown RBP14.03□□□□□ -0.16
PTPRR-209ENST00000549308 PGAP2Q9UHJ9 254 aa14.03□□□□□ -0.16
PTPRR-209ENST00000549308 ATP6V1DQ9Y5K8 247 aa14.03□□□□□ -0.16
PTPRR-209ENST00000549308 GH2P01242 217 aa14.02□□□□□ -0.16
PTPRR-209ENST00000549308 GUCY1B3Q02153 619 aa14.02□□□□□ -0.16
PTPRR-209ENST00000549308 SEPT2Q15019 361 aa14.02□□□□□ -0.16
PTPRR-209ENST00000549308 FOXD4L6Q3SYB3 417 aaPredicted RBP14.02□□□□□ -0.16
PTPRR-209ENST00000549308 FOXD4L3Q6VB84 417 aaPredicted RBP14.02□□□□□ -0.16
PTPRR-209ENST00000549308 CLEC17AQ6ZS10 378 aa14.02□□□□□ -0.16
PTPRR-209ENST00000549308 FERMT3Q86UX7 667 aa14.02□□□□□ -0.16
PTPRR-209ENST00000549308 RNF26Q9BY78 433 aaPredicted RBP14.02□□□□□ -0.16
PTPRR-209ENST00000549308 DEFB129Q9H1M3 183 aa14.02□□□□□ -0.16
PTPRR-209ENST00000549308 KANSL2Q9H9L4 492 aa14.02□□□□□ -0.16
PTPRR-209ENST00000549308 GGA3Q9NZ52 723 aa14.02□□□□□ -0.16
PTPRR-209ENST00000549308 GOLGA6L22H0YM25 854 aa14.01□□□□□ -0.17
PTPRR-209ENST00000549308 DEXIO95424 95 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms