RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 GPR142Q7Z601 462 aa15.64■□□□□ 0.09
PTCH1-218ENST00000548945 PLEKHH3Q7Z736 793 aa15.64■□□□□ 0.09
PTCH1-218ENST00000548945 KIAA1683Q9H0B3 1180 aa15.64■□□□□ 0.09
PTCH1-218ENST00000548945 GLRX3O76003 335 aaKnown RBP15.63■□□□□ 0.09
PTCH1-218ENST00000548945 CCNA1P78396 465 aa15.63■□□□□ 0.09
PTCH1-218ENST00000548945 TTF1Q15361 905 aaPredicted RBP15.63■□□□□ 0.09
PTCH1-218ENST00000548945 CERKLQ49MI3 558 aaPredicted RBP15.63■□□□□ 0.09
PTCH1-218ENST00000548945 LBX2Q6XYB7 198 aa15.63■□□□□ 0.09
PTCH1-218ENST00000548945 AACSQ86V21 672 aa15.63■□□□□ 0.09
PTCH1-218ENST00000548945 FEZ1Q99689 392 aa15.63■□□□□ 0.09
PTCH1-218ENST00000548945 APBA2Q99767 749 aa15.63■□□□□ 0.09
PTCH1-218ENST00000548945 GDF15Q99988 308 aa15.63■□□□□ 0.09
PTCH1-218ENST00000548945 PORCNQ9H237 461 aa15.63■□□□□ 0.09
PTCH1-218ENST00000548945 C11orf49Q9H6J7 331 aa15.63■□□□□ 0.09
PTCH1-218ENST00000548945 FRMPD3Q5JV73 1810 aa15.63■□□□□ 0.09
PTCH1-218ENST00000548945 MYH8P13535 1937 aa15.62■□□□□ 0.09
PTCH1-218ENST00000548945 PEX10O60683 326 aa15.62■□□□□ 0.09
PTCH1-218ENST00000548945 CACNB2Q08289 660 aaPredicted RBP15.62■□□□□ 0.09
PTCH1-218ENST00000548945 ABCB5Q2M3G0 1257 aa15.62■□□□□ 0.09
PTCH1-218ENST00000548945 POTEEQ6S8J3 1075 aa15.62■□□□□ 0.09
PTCH1-218ENST00000548945 CATSPERGQ6ZRH7 1159 aa15.62■□□□□ 0.09
PTCH1-218ENST00000548945 RIOK1Q9BRS2 568 aaKnown RBP15.62■□□□□ 0.09
PTCH1-218ENST00000548945 PAGR1Q9BTK6 254 aa15.62■□□□□ 0.09
PTCH1-218ENST00000548945 ANTXR1Q9H6X2 564 aa15.62■□□□□ 0.09
PTCH1-218ENST00000548945 CABP5Q9NP86 173 aa15.62■□□□□ 0.09
PTCH1-218ENST00000548945 STAP2Q9UGK3 403 aa15.62■□□□□ 0.09
PTCH1-218ENST00000548945 EXOC6BQ9Y2D4 811 aa15.62■□□□□ 0.09
PTCH1-218ENST00000548945 LAMA2P24043 3122 aaKnown RBP15.62■□□□□ 0.09
PTCH1-218ENST00000548945 CUL9Q8IWT3 2517 aa15.62■□□□□ 0.09
PTCH1-218ENST00000548945 MS4A1P11836 297 aa15.61■□□□□ 0.09
PTCH1-218ENST00000548945 MAP2K5Q13163 448 aa15.61■□□□□ 0.09
PTCH1-218ENST00000548945 RAB3GAP1Q15042 981 aa15.61■□□□□ 0.09
PTCH1-218ENST00000548945 C7orf61Q8IZ16 206 aa15.61■□□□□ 0.09
PTCH1-218ENST00000548945 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.61■□□□□ 0.09
PTCH1-218ENST00000548945 NDUFB9Q9Y6M9 179 aa15.61■□□□□ 0.09
PTCH1-218ENST00000548945 MAGEB6P1A0A0J9YX57 407 aa15.6■□□□□ 0.09
PTCH1-218ENST00000548945 CNMDO75829 334 aa15.6■□□□□ 0.09
PTCH1-218ENST00000548945 VCAM1P19320 739 aa15.6■□□□□ 0.09
PTCH1-218ENST00000548945 SHMT1P34896 483 aa15.6■□□□□ 0.09
PTCH1-218ENST00000548945 PLCD1P51178 756 aa15.6■□□□□ 0.09
PTCH1-218ENST00000548945 GABPAQ06546 454 aa15.6■□□□□ 0.09
PTCH1-218ENST00000548945 GPR153Q6NV75 609 aa15.6■□□□□ 0.09
PTCH1-218ENST00000548945 RHPN1Q8TCX5 695 aa15.6■□□□□ 0.09
PTCH1-218ENST00000548945 CRNKL1Q9BZJ0 848 aaKnown RBP15.6■□□□□ 0.09
PTCH1-218ENST00000548945 CWC22Q9HCG8 908 aaKnown RBP15.6■□□□□ 0.09
PTCH1-218ENST00000548945 RLFQ13129 1914 aa15.59■□□□□ 0.09
PTCH1-218ENST00000548945 SLC15A5A6NIM6 579 aa15.59■□□□□ 0.09
PTCH1-218ENST00000548945 HOXC6P09630 235 aa15.59■□□□□ 0.09
PTCH1-218ENST00000548945 COL6A1P12109 1028 aa15.59■□□□□ 0.09
PTCH1-218ENST00000548945 PDE6AP16499 860 aa15.59■□□□□ 0.09
PTCH1-218ENST00000548945 ZYXQ15942 572 aaKnown RBP15.59■□□□□ 0.09
PTCH1-218ENST00000548945 CCL14Q16627 93 aa15.59■□□□□ 0.09
PTCH1-218ENST00000548945 SLC9C2Q5TAH2 1124 aa15.59■□□□□ 0.09
PTCH1-218ENST00000548945 LHX8Q68G74 356 aa15.59■□□□□ 0.09
PTCH1-218ENST00000548945 CLASRPQ8N2M8 674 aaKnown RBP15.59■□□□□ 0.09
PTCH1-218ENST00000548945 ACER1Q8TDN7 264 aa15.59■□□□□ 0.09
PTCH1-218ENST00000548945 EDC3Q96F86 508 aaKnown RBP15.59■□□□□ 0.09
PTCH1-218ENST00000548945 PFASO15067 1338 aa15.59■□□□□ 0.09
PTCH1-218ENST00000548945 ZBED9Q6R2W3 1325 aa15.59■□□□□ 0.09
PTCH1-218ENST00000548945 ZNF236Q9UL36 1845 aa15.59■□□□□ 0.09
PTCH1-218ENST00000548945 POLR3DP05423 398 aaPredicted RBP15.58■□□□□ 0.08
PTCH1-218ENST00000548945 GUCY1A2P33402 732 aa15.58■□□□□ 0.08
PTCH1-218ENST00000548945 MFSD14CQ5VZR4 134 aa15.58■□□□□ 0.08
PTCH1-218ENST00000548945 RPAP2Q8IXW5 612 aaPredicted RBP15.58■□□□□ 0.08
PTCH1-218ENST00000548945 PANK1Q8TE04 598 aa15.58■□□□□ 0.08
PTCH1-218ENST00000548945 KIF1BPQ96EK5 621 aa15.58■□□□□ 0.08
PTCH1-218ENST00000548945 IL1RAPL2Q9NP60 686 aa15.58■□□□□ 0.08
PTCH1-218ENST00000548945 ZMYND8Q9ULU4 1186 aaPredicted RBP15.58■□□□□ 0.08
PTCH1-218ENST00000548945 IVNS1ABPQ9Y6Y0 642 aa15.58■□□□□ 0.08
PTCH1-218ENST00000548945 MYH7P12883 1935 aa15.58■□□□□ 0.08
PTCH1-218ENST00000548945 BAZ2AQ9UIF9 1905 aaKnown RBP15.57■□□□□ 0.08
PTCH1-218ENST00000548945 SPDYE16A6NNV3 312 aaPredicted RBP15.57■□□□□ 0.08
PTCH1-218ENST00000548945 SOX1O00570 391 aaPredicted RBP15.57■□□□□ 0.08
PTCH1-218ENST00000548945 MSCO60682 206 aa15.57■□□□□ 0.08
PTCH1-218ENST00000548945 HMMRO75330 724 aa15.57■□□□□ 0.08
PTCH1-218ENST00000548945 PTPREP23469 700 aa15.57■□□□□ 0.08
PTCH1-218ENST00000548945 CCND3P30281 292 aaPredicted RBP15.57■□□□□ 0.08
PTCH1-218ENST00000548945 GRB14Q14449 540 aa15.57■□□□□ 0.08
PTCH1-218ENST00000548945 RPAP3Q9H6T3 665 aaPredicted RBP15.57■□□□□ 0.08
PTCH1-218ENST00000548945 MCM9Q9NXL9 1143 aa15.57■□□□□ 0.08
PTCH1-218ENST00000548945 A0A0G2JMZ2 1700 aa15.57■□□□□ 0.08
PTCH1-218ENST00000548945 TCRBV5S4A2TA0A5A2 114 aa15.56■□□□□ 0.08
PTCH1-218ENST00000548945 MAGEA10P43363 369 aaPredicted RBP15.56■□□□□ 0.08
PTCH1-218ENST00000548945 SEPT2Q15019 361 aa15.56■□□□□ 0.08
PTCH1-218ENST00000548945 LRIT3Q3SXY7 679 aa15.56■□□□□ 0.08
PTCH1-218ENST00000548945 DCP1AQ9NPI6 582 aaPredicted RBP15.56■□□□□ 0.08
PTCH1-218ENST00000548945 HOXC10Q9NYD6 342 aa15.56■□□□□ 0.08
PTCH1-218ENST00000548945 BTBD7Q9P203 1132 aa15.56■□□□□ 0.08
PTCH1-218ENST00000548945 SWAP70Q9UH65 585 aa15.56■□□□□ 0.08
PTCH1-218ENST00000548945 ZNF532Q9HCE3 1301 aa15.56■□□□□ 0.08
PTCH1-218ENST00000548945 ZNFX1Q9P2E3 1918 aaKnown RBP15.55■□□□□ 0.08
PTCH1-218ENST00000548945 PARP14Q460N5 1801 aa15.55■□□□□ 0.08
PTCH1-218ENST00000548945 GOLIM4O00461 696 aa15.55■□□□□ 0.08
PTCH1-218ENST00000548945 STRNO43815 780 aa15.55■□□□□ 0.08
PTCH1-218ENST00000548945 RAB11FIP3O75154 756 aa15.55■□□□□ 0.08
PTCH1-218ENST00000548945 IGHA2P01877 340 aa15.55■□□□□ 0.08
PTCH1-218ENST00000548945 IFIT2P09913 472 aaKnown RBP15.55■□□□□ 0.08
PTCH1-218ENST00000548945 ATP2B2Q01814 1243 aa15.55■□□□□ 0.08
PTCH1-218ENST00000548945 COG2Q14746 738 aa15.55■□□□□ 0.08
PTCH1-218ENST00000548945 WDR78Q5VTH9 848 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms