RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 CLDN10P78369 228 aa10.16□□□□□ -0.78
VPS29-203ENST00000546588 SCARF1Q14162 830 aa10.16□□□□□ -0.78
VPS29-203ENST00000546588 CCDC158Q5M9N0 1113 aa10.16□□□□□ -0.78
VPS29-203ENST00000546588 CCDC102BQ68D86 513 aa10.16□□□□□ -0.78
VPS29-203ENST00000546588 DEFB132Q7Z7B7 95 aa10.16□□□□□ -0.78
VPS29-203ENST00000546588 CLP1Q92989 425 aaKnown RBP10.16□□□□□ -0.78
VPS29-203ENST00000546588 USP26Q9BXU7 913 aa10.16□□□□□ -0.78
VPS29-203ENST00000546588 PARP3Q9Y6F1 533 aa10.16□□□□□ -0.78
VPS29-203ENST00000546588 MYH2Q9UKX2 1941 aa10.15□□□□□ -0.78
VPS29-203ENST00000546588 DICER1Q9UPY3 1922 aaKnown RBP10.15□□□□□ -0.78
VPS29-203ENST00000546588 XDHP47989 1333 aa10.15□□□□□ -0.78
VPS29-203ENST00000546588 IFIT1P09914 478 aaKnown RBP10.15□□□□□ -0.78
VPS29-203ENST00000546588 ADORA1P30542 326 aa10.15□□□□□ -0.78
VPS29-203ENST00000546588 MCAMP43121 646 aa10.15□□□□□ -0.78
VPS29-203ENST00000546588 SERPINB4P48594 390 aa10.15□□□□□ -0.78
VPS29-203ENST00000546588 SH3BP5LQ7L8J4 393 aa10.15□□□□□ -0.78
VPS29-203ENST00000546588 KCNB2Q92953 911 aa10.15□□□□□ -0.78
VPS29-203ENST00000546588 RBM17Q96I25 401 aaKnown RBP10.15□□□□□ -0.78
VPS29-203ENST00000546588 KIF2CQ99661 725 aa10.15□□□□□ -0.78
VPS29-203ENST00000546588 IL25Q9H293 177 aa10.15□□□□□ -0.78
VPS29-203ENST00000546588 UPF2Q9HAU5 1272 aaKnown RBP10.15□□□□□ -0.78
VPS29-203ENST00000546588 LEMD3Q9Y2U8 911 aa10.15□□□□□ -0.78
VPS29-203ENST00000546588 SCN9AQ15858 1988 aa10.14□□□□□ -0.79
VPS29-203ENST00000546588 SOBPA7XYQ1 873 aa10.14□□□□□ -0.79
VPS29-203ENST00000546588 ZFYP08048 801 aaPredicted RBP10.14□□□□□ -0.79
VPS29-203ENST00000546588 NPR1P16066 1061 aa10.14□□□□□ -0.79
VPS29-203ENST00000546588 SCNN1AP37088 669 aa10.14□□□□□ -0.79
VPS29-203ENST00000546588 ANAPC15P60006 121 aa10.14□□□□□ -0.79
VPS29-203ENST00000546588 TTF1Q15361 905 aaPredicted RBP10.14□□□□□ -0.79
VPS29-203ENST00000546588 C4orf48Q5BLP8 95 aa10.14□□□□□ -0.79
VPS29-203ENST00000546588 STYK1Q6J9G0 422 aa10.14□□□□□ -0.79
VPS29-203ENST00000546588 FBXO33Q7Z6M2 555 aa10.14□□□□□ -0.79
VPS29-203ENST00000546588 RPGRQ92834 1020 aaKnown RBP10.14□□□□□ -0.79
VPS29-203ENST00000546588 FOXJ1Q92949 421 aa10.14□□□□□ -0.79
VPS29-203ENST00000546588 C22orf23Q9BZE7 217 aa10.14□□□□□ -0.79
VPS29-203ENST00000546588 BOLA2Q9H3K6 86 aa10.14□□□□□ -0.79
VPS29-203ENST00000546588 PAG1Q9NWQ8 432 aa10.14□□□□□ -0.79
VPS29-203ENST00000546588 SALL1Q9NSC2 1324 aa10.13□□□□□ -0.79
VPS29-203ENST00000546588 TTC39AQ5SRH9 613 aa10.13□□□□□ -0.79
VPS29-203ENST00000546588 SP8Q8IXZ3 490 aa10.13□□□□□ -0.79
VPS29-203ENST00000546588 RUFY2Q8WXA3 655 aa10.13□□□□□ -0.79
VPS29-203ENST00000546588 RILPL2Q969X0 211 aa10.13□□□□□ -0.79
VPS29-203ENST00000546588 MASTLQ96GX5 879 aa10.13□□□□□ -0.79
VPS29-203ENST00000546588 NEUROD6Q96NK8 337 aa10.13□□□□□ -0.79
VPS29-203ENST00000546588 LSG1Q9H089 658 aaKnown RBP10.13□□□□□ -0.79
VPS29-203ENST00000546588 HELLSQ9NRZ9 838 aa10.13□□□□□ -0.79
VPS29-203ENST00000546588 BIN2Q9UBW5 565 aaPredicted RBP10.13□□□□□ -0.79
VPS29-203ENST00000546588 NAV1Q8NEY1 1877 aa10.13□□□□□ -0.79
VPS29-203ENST00000546588 ZMYM6O95789 1325 aa10.12□□□□□ -0.79
VPS29-203ENST00000546588 PRMT3O60678 531 aa10.12□□□□□ -0.79
VPS29-203ENST00000546588 TAF5LO75529 589 aa10.12□□□□□ -0.79
VPS29-203ENST00000546588 NR3C2P08235 984 aa10.12□□□□□ -0.79
VPS29-203ENST00000546588 ALDH1B1P30837 517 aa10.12□□□□□ -0.79
VPS29-203ENST00000546588 GRM5P41594 1212 aa10.12□□□□□ -0.79
VPS29-203ENST00000546588 PHKA1P46020 1223 aa10.12□□□□□ -0.79
VPS29-203ENST00000546588 GTF2IP78347 998 aa10.12□□□□□ -0.79
VPS29-203ENST00000546588 RASGRF1Q13972 1273 aa10.12□□□□□ -0.79
VPS29-203ENST00000546588 LRRFIP1Q32MZ4 808 aaKnown RBP10.12□□□□□ -0.79
VPS29-203ENST00000546588 ZMYM1Q5SVZ6 1142 aa10.12□□□□□ -0.79
VPS29-203ENST00000546588 ZFAND3Q9H8U3 227 aa10.12□□□□□ -0.79
VPS29-203ENST00000546588 ATP6V0A2Q9Y487 856 aa10.12□□□□□ -0.79
VPS29-203ENST00000546588 A0A0D9SFI3 127 aa10.11□□□□□ -0.79
VPS29-203ENST00000546588 A0A0U1RQG5 324 aaPredicted RBP10.11□□□□□ -0.79
VPS29-203ENST00000546588 CYP2E1P05181 493 aaPredicted RBP10.11□□□□□ -0.79
VPS29-203ENST00000546588 HSPA4P34932 840 aa10.11□□□□□ -0.79
VPS29-203ENST00000546588 NR5A1Q13285 461 aa10.11□□□□□ -0.79
VPS29-203ENST00000546588 UBE3CQ15386 1083 aa10.11□□□□□ -0.79
VPS29-203ENST00000546588 SWI5Q1ZZU3 235 aa10.11□□□□□ -0.79
VPS29-203ENST00000546588 BPHLQ86WA6 291 aaPredicted RBP10.11□□□□□ -0.79
VPS29-203ENST00000546588 LARGE2Q8N3Y3 721 aa10.11□□□□□ -0.79
VPS29-203ENST00000546588 SPATA5Q8NB90 893 aa10.11□□□□□ -0.79
VPS29-203ENST00000546588 C7orf43Q8WVR3 580 aa10.11□□□□□ -0.79
VPS29-203ENST00000546588 MAP4K1Q92918 833 aa10.11□□□□□ -0.79
VPS29-203ENST00000546588 ITPKCQ96DU7 683 aa10.11□□□□□ -0.79
VPS29-203ENST00000546588 SLC10A4Q96EP9 437 aa10.11□□□□□ -0.79
VPS29-203ENST00000546588 FAM84BQ96KN1 310 aaPredicted RBP10.11□□□□□ -0.79
VPS29-203ENST00000546588 FSD1Q9BTV5 496 aa10.11□□□□□ -0.79
VPS29-203ENST00000546588 MTFR1LQ9H019 292 aa10.11□□□□□ -0.79
VPS29-203ENST00000546588 HMG20BQ9P0W2 317 aa10.11□□□□□ -0.79
VPS29-203ENST00000546588 KIAA1024Q9UPX6 916 aa10.11□□□□□ -0.79
VPS29-203ENST00000546588 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.11□□□□□ -0.79
VPS29-203ENST00000546588 CCDC171Q6TFL3 1326 aa10.1□□□□□ -0.79
VPS29-203ENST00000546588 BAZ2AQ9UIF9 1905 aaKnown RBP10.1□□□□□ -0.79
VPS29-203ENST00000546588 TCRBV5S4A2TA0A5A2 114 aa10.1□□□□□ -0.79
VPS29-203ENST00000546588 NPHP1O15259 732 aa10.1□□□□□ -0.79
VPS29-203ENST00000546588 LGR5O75473 907 aa10.1□□□□□ -0.79
VPS29-203ENST00000546588 ZIC2O95409 532 aaPredicted RBP10.1□□□□□ -0.79
VPS29-203ENST00000546588 IL1R1P14778 569 aa10.1□□□□□ -0.79
VPS29-203ENST00000546588 ADD2P35612 726 aa10.1□□□□□ -0.79
VPS29-203ENST00000546588 ANP32AP39687 249 aaKnown RBP10.1□□□□□ -0.79
VPS29-203ENST00000546588 ZAP70P43403 619 aa10.1□□□□□ -0.79
VPS29-203ENST00000546588 NMIQ13287 307 aaPredicted RBP10.1□□□□□ -0.79
VPS29-203ENST00000546588 CC2D2BQ6DHV5 1058 aa10.1□□□□□ -0.79
VPS29-203ENST00000546588 TPCN2Q8NHX9 752 aa10.1□□□□□ -0.79
VPS29-203ENST00000546588 SNX21Q969T3 373 aa10.1□□□□□ -0.79
VPS29-203ENST00000546588 PRIMPOLQ96LW4 560 aa10.1□□□□□ -0.79
VPS29-203ENST00000546588 RTFDC1Q9BY42 306 aaPredicted RBP10.1□□□□□ -0.79
VPS29-203ENST00000546588 PDGFDQ9GZP0 370 aaPredicted RBP10.1□□□□□ -0.79
VPS29-203ENST00000546588 ANTXR1Q9H6X2 564 aa10.1□□□□□ -0.79
VPS29-203ENST00000546588 DIAPH3Q9NSV4 1193 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms