RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 TOB2Q14106 344 aaPredicted RBP18.77■□□□□ 0.6
PRPF40A-212ENST00000545856 MIGA2Q7L4E1 593 aa18.77■□□□□ 0.6
PRPF40A-212ENST00000545856 SCYL3Q8IZE3 742 aa18.77■□□□□ 0.6
PRPF40A-212ENST00000545856 STK11IPQ8N1F8 1099 aa18.77■□□□□ 0.6
PRPF40A-212ENST00000545856 RBM46Q8TBY0 533 aaKnown RBP18.77■□□□□ 0.6
PRPF40A-212ENST00000545856 BRF1Q92994 677 aa18.77■□□□□ 0.6
PRPF40A-212ENST00000545856 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.77■□□□□ 0.6
PRPF40A-212ENST00000545856 IL17RBQ9NRM6 502 aa18.77■□□□□ 0.6
PRPF40A-212ENST00000545856 PHIPQ8WWQ0 1821 aa18.77■□□□□ 0.59
PRPF40A-212ENST00000545856 K7ELQ4 463 aaPredicted RBP18.76■□□□□ 0.59
PRPF40A-212ENST00000545856 MPHOSPH10O00566 681 aaKnown RBP18.76■□□□□ 0.59
PRPF40A-212ENST00000545856 CPA1P15085 419 aa18.76■□□□□ 0.59
PRPF40A-212ENST00000545856 MAP3K9P80192 1104 aa18.76■□□□□ 0.59
PRPF40A-212ENST00000545856 ICA1Q05084 483 aa18.76■□□□□ 0.59
PRPF40A-212ENST00000545856 MAP1SQ66K74 1059 aaPredicted RBP18.76■□□□□ 0.59
PRPF40A-212ENST00000545856 RCSD1Q6JBY9 416 aa18.76■□□□□ 0.59
PRPF40A-212ENST00000545856 CATIPQ7Z7H3 387 aa18.76■□□□□ 0.59
PRPF40A-212ENST00000545856 ANKRD13AQ8IZ07 590 aa18.76■□□□□ 0.59
PRPF40A-212ENST00000545856 SMC1BQ8NDV3 1235 aa18.76■□□□□ 0.59
PRPF40A-212ENST00000545856 CEP95Q96GE4 821 aa18.76■□□□□ 0.59
PRPF40A-212ENST00000545856 WRNIP1Q96S55 665 aa18.76■□□□□ 0.59
PRPF40A-212ENST00000545856 KAT14Q9H8E8 782 aa18.76■□□□□ 0.59
PRPF40A-212ENST00000545856 AS3MTQ9HBK9 375 aa18.76■□□□□ 0.59
PRPF40A-212ENST00000545856 ARHGEF10LQ9HCE6 1279 aa18.76■□□□□ 0.59
PRPF40A-212ENST00000545856 CCDC196A0A1B0GTZ2 297 aa18.75■□□□□ 0.59
PRPF40A-212ENST00000545856 FAM196BA6NMK8 535 aa18.75■□□□□ 0.59
PRPF40A-212ENST00000545856 DHX16O60231 1041 aaKnown RBP18.75■□□□□ 0.59
PRPF40A-212ENST00000545856 GH2P01242 217 aa18.75■□□□□ 0.59
PRPF40A-212ENST00000545856 ZNF526Q8TF50 670 aaPredicted RBP18.75■□□□□ 0.59
PRPF40A-212ENST00000545856 PICK1Q9NRD5 415 aa18.75■□□□□ 0.59
PRPF40A-212ENST00000545856 STX8Q9UNK0 236 aa18.75■□□□□ 0.59
PRPF40A-212ENST00000545856 CSADQ9Y600 493 aa18.75■□□□□ 0.59
PRPF40A-212ENST00000545856 SLC12A7Q9Y666 1083 aa18.75■□□□□ 0.59
PRPF40A-212ENST00000545856 KIF3CO14782 793 aa18.74■□□□□ 0.59
PRPF40A-212ENST00000545856 USP2O75604 605 aaPredicted RBP18.74■□□□□ 0.59
PRPF40A-212ENST00000545856 TOMM70O94826 608 aa18.74■□□□□ 0.59
PRPF40A-212ENST00000545856 POTEIP0CG38 1075 aa18.74■□□□□ 0.59
PRPF40A-212ENST00000545856 POTEJP0CG39 1038 aa18.74■□□□□ 0.59
PRPF40A-212ENST00000545856 APOA5Q6Q788 366 aa18.74■□□□□ 0.59
PRPF40A-212ENST00000545856 NFXL1Q6ZNB6 911 aa18.74■□□□□ 0.59
PRPF40A-212ENST00000545856 CHST3Q7LGC8 479 aa18.74■□□□□ 0.59
PRPF40A-212ENST00000545856 WDR18Q9BV38 432 aa18.74■□□□□ 0.59
PRPF40A-212ENST00000545856 PTPRFP10586 1907 aa18.73■□□□□ 0.59
PRPF40A-212ENST00000545856 USP17L5A8MUK1 530 aa18.73■□□□□ 0.59
PRPF40A-212ENST00000545856 ZBTB43O43298 467 aa18.73■□□□□ 0.59
PRPF40A-212ENST00000545856 GDF11O95390 407 aa18.73■□□□□ 0.59
PRPF40A-212ENST00000545856 ITGBL1O95965 494 aaPredicted RBP18.73■□□□□ 0.59
PRPF40A-212ENST00000545856 FSTL1Q12841 308 aa18.73■□□□□ 0.59
PRPF40A-212ENST00000545856 ZNF654Q8IZM8 581 aa18.73■□□□□ 0.59
PRPF40A-212ENST00000545856 PNMA1Q8ND90 353 aa18.73■□□□□ 0.59
PRPF40A-212ENST00000545856 GMCL1P1Q8NEA9 526 aa18.73■□□□□ 0.59
PRPF40A-212ENST00000545856 INTS4Q96HW7 963 aaKnown RBP18.73■□□□□ 0.59
PRPF40A-212ENST00000545856 TCEANC2Q96MN5 208 aa18.73■□□□□ 0.59
PRPF40A-212ENST00000545856 RBM28Q9NW13 759 aaKnown RBP18.73■□□□□ 0.59
PRPF40A-212ENST00000545856 SCAF8Q9UPN6 1271 aaKnown RBP18.73■□□□□ 0.59
PRPF40A-212ENST00000545856 KLF18A0A0U1RQI7 1052 aa18.72■□□□□ 0.59
PRPF40A-212ENST00000545856 PFKFB2O60825 505 aa18.72■□□□□ 0.59
PRPF40A-212ENST00000545856 YY1P25490 414 aa18.72■□□□□ 0.59
PRPF40A-212ENST00000545856 KIF5BP33176 963 aa18.72■□□□□ 0.59
PRPF40A-212ENST00000545856 GUCY1A2P33402 732 aa18.72■□□□□ 0.59
PRPF40A-212ENST00000545856 SEPT2Q15019 361 aa18.72■□□□□ 0.59
PRPF40A-212ENST00000545856 C2orf69Q8N8R5 385 aa18.72■□□□□ 0.59
PRPF40A-212ENST00000545856 TMEM47Q9BQJ4 181 aa18.72■□□□□ 0.59
PRPF40A-212ENST00000545856 ZKSCAN3Q9BRR0 538 aa18.72■□□□□ 0.59
PRPF40A-212ENST00000545856 LRRC2Q9BYS8 371 aa18.72■□□□□ 0.59
PRPF40A-212ENST00000545856 TMX2Q9Y320 296 aa18.72■□□□□ 0.59
PRPF40A-212ENST00000545856 GNAQP50148 359 aa18.71■□□□□ 0.59
PRPF40A-212ENST00000545856 USP14P54578 494 aa18.71■□□□□ 0.59
PRPF40A-212ENST00000545856 TROAPQ12815 778 aa18.71■□□□□ 0.59
PRPF40A-212ENST00000545856 COL9A3Q14050 684 aaPredicted RBP18.71■□□□□ 0.59
PRPF40A-212ENST00000545856 RRP1BQ14684 758 aaKnown RBP18.71■□□□□ 0.59
PRPF40A-212ENST00000545856 RAB3GAP1Q15042 981 aa18.71■□□□□ 0.59
PRPF40A-212ENST00000545856 LDLRAD1Q5T700 205 aa18.71■□□□□ 0.59
PRPF40A-212ENST00000545856 CPLX2Q6PUV4 134 aaKnown RBP18.71■□□□□ 0.59
PRPF40A-212ENST00000545856 NKX2-3Q8TAU0 364 aa18.71■□□□□ 0.59
PRPF40A-212ENST00000545856 TMX3Q96JJ7 454 aa18.71■□□□□ 0.59
PRPF40A-212ENST00000545856 GBA2Q9HCG7 927 aaPredicted RBP18.71■□□□□ 0.59
PRPF40A-212ENST00000545856 TPCN1Q9ULQ1 816 aa18.71■□□□□ 0.59
PRPF40A-212ENST00000545856 PASKQ96RG2 1323 aa18.71■□□□□ 0.59
PRPF40A-212ENST00000545856 GOLGA8BA8MQT2 603 aa18.7■□□□□ 0.58
PRPF40A-212ENST00000545856 CDKL5O76039 1030 aa18.7■□□□□ 0.58
PRPF40A-212ENST00000545856 SNHG28P0DPA3 235 aa18.7■□□□□ 0.58
PRPF40A-212ENST00000545856 EEF2P13639 858 aaKnown RBP18.7■□□□□ 0.58
PRPF40A-212ENST00000545856 PDIA3P30101 505 aaKnown RBP18.7■□□□□ 0.58
PRPF40A-212ENST00000545856 INPP5BP32019 993 aa18.7■□□□□ 0.58
PRPF40A-212ENST00000545856 PPATQ06203 517 aa18.7■□□□□ 0.58
PRPF40A-212ENST00000545856 APOBRQ0VD83 1088 aa18.7■□□□□ 0.58
PRPF40A-212ENST00000545856 CUL4AQ13619 759 aa18.7■□□□□ 0.58
PRPF40A-212ENST00000545856 PRAMEF18Q5VWM3 479 aa18.7■□□□□ 0.58
PRPF40A-212ENST00000545856 CTCFLQ8NI51 663 aaPredicted RBP18.7■□□□□ 0.58
PRPF40A-212ENST00000545856 DCAF4Q8WV16 495 aa18.7■□□□□ 0.58
PRPF40A-212ENST00000545856 LPAR1Q92633 364 aa18.7■□□□□ 0.58
PRPF40A-212ENST00000545856 GTF3C6Q969F1 213 aa18.7■□□□□ 0.58
PRPF40A-212ENST00000545856 LZTS2Q9BRK4 669 aa18.7■□□□□ 0.58
PRPF40A-212ENST00000545856 LLPHQ9BRT6 129 aaKnown RBP18.7■□□□□ 0.58
PRPF40A-212ENST00000545856 KIAA1683Q9H0B3 1180 aa18.7■□□□□ 0.58
PRPF40A-212ENST00000545856 SLKQ9H2G2 1235 aaPredicted RBP18.7■□□□□ 0.58
PRPF40A-212ENST00000545856 GOPCQ9HD26 462 aa18.7■□□□□ 0.58
PRPF40A-212ENST00000545856 MYH6P13533 1939 aa18.7■□□□□ 0.58
PRPF40A-212ENST00000545856 C19orf81C9J6K1 198 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 126.2 ms