RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	TMEM67	Q5HYA8	995 aa		11.95	□□□□□ -0.5
CPSF7-221	ENST00000543545	MB21D2	Q8IYB1	491 aa	Predicted RBP	11.95	□□□□□ -0.5
CPSF7-221	ENST00000543545	ZNF280C	Q8ND82	737 aa		11.95	□□□□□ -0.5
CPSF7-221	ENST00000543545	NKX2-3	Q8TAU0	364 aa		11.95	□□□□□ -0.5
CPSF7-221	ENST00000543545	CNKSR2	Q8WXI2	1034 aa		11.95	□□□□□ -0.5
CPSF7-221	ENST00000543545	CEP95	Q96GE4	821 aa		11.95	□□□□□ -0.5
CPSF7-221	ENST00000543545	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	11.95	□□□□□ -0.5
CPSF7-221	ENST00000543545	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	11.95	□□□□□ -0.5
CPSF7-221	ENST00000543545	LRRC2	Q9BYS8	371 aa		11.95	□□□□□ -0.5
CPSF7-221	ENST00000543545	ARHGEF10L	Q9HCE6	1279 aa		11.95	□□□□□ -0.5
CPSF7-221	ENST00000543545	TCP11L1	Q9NUJ3	509 aa		11.95	□□□□□ -0.5
CPSF7-221	ENST00000543545	CYP46A1	Q9Y6A2	500 aa		11.95	□□□□□ -0.5
CPSF7-221	ENST00000543545	SPDYE5	A6NIY4	337 aa		11.94	□□□□□ -0.5
CPSF7-221	ENST00000543545	TTLL1	O95922	423 aa		11.94	□□□□□ -0.5
CPSF7-221	ENST00000543545	RPS6KB1	P23443	525 aa		11.94	□□□□□ -0.5
CPSF7-221	ENST00000543545	RBM25	P49756	843 aa	Known RBP	11.94	□□□□□ -0.5
CPSF7-221	ENST00000543545	ZYX	Q15942	572 aa	Known RBP	11.94	□□□□□ -0.5
CPSF7-221	ENST00000543545	IFIT1B	Q5T764	474 aa	Known RBP	11.94	□□□□□ -0.5
CPSF7-221	ENST00000543545	NFXL1	Q6ZNB6	911 aa		11.94	□□□□□ -0.5
CPSF7-221	ENST00000543545	ACER1	Q8TDN7	264 aa		11.94	□□□□□ -0.5
CPSF7-221	ENST00000543545	CCDC102A	Q96A19	550 aa		11.94	□□□□□ -0.5
CPSF7-221	ENST00000543545	TCEANC2	Q96MN5	208 aa		11.94	□□□□□ -0.5
CPSF7-221	ENST00000543545	TBC1D32	Q96NH3	1257 aa		11.94	□□□□□ -0.5
CPSF7-221	ENST00000543545	TBC1D2	Q9BYX2	928 aa		11.94	□□□□□ -0.5
CPSF7-221	ENST00000543545	UPF3B	Q9BZI7	483 aa	Known RBP	11.94	□□□□□ -0.5
CPSF7-221	ENST00000543545	TM6SF1	Q9BZW5	370 aa		11.94	□□□□□ -0.5
CPSF7-221	ENST00000543545	SH2D4A	Q9H788	454 aa		11.94	□□□□□ -0.5
CPSF7-221	ENST00000543545	ZSWIM6	Q9HCJ5	1215 aa		11.94	□□□□□ -0.5
CPSF7-221	ENST00000543545	IL17RB	Q9NRM6	502 aa		11.94	□□□□□ -0.5
CPSF7-221	ENST00000543545	MTMR4	Q9NYA4	1195 aa		11.94	□□□□□ -0.5
CPSF7-221	ENST00000543545	ISY1	Q9ULR0	285 aa	Known RBP	11.94	□□□□□ -0.5
CPSF7-221	ENST00000543545	MTMR7	Q9Y216	660 aa		11.94	□□□□□ -0.5
CPSF7-221	ENST00000543545	TNKS	O95271	1327 aa		11.93	□□□□□ -0.5
CPSF7-221	ENST00000543545	POLR2A	P24928	1970 aa	Known RBP	11.93	□□□□□ -0.5
CPSF7-221	ENST00000543545	IGKV6D-41	A0A0C4DH26	115 aa		11.93	□□□□□ -0.5
CPSF7-221	ENST00000543545	USP17L10	C9JJH3	530 aa		11.93	□□□□□ -0.5
CPSF7-221	ENST00000543545	IRF6	O14896	467 aa		11.93	□□□□□ -0.5
CPSF7-221	ENST00000543545	ANTXR2	P58335	489 aa		11.93	□□□□□ -0.5
CPSF7-221	ENST00000543545	HTRA3	P83110	453 aa		11.93	□□□□□ -0.5
CPSF7-221	ENST00000543545	PPIL2	Q13356	520 aa		11.93	□□□□□ -0.5
CPSF7-221	ENST00000543545	WTAP	Q15007	396 aa		11.93	□□□□□ -0.5
CPSF7-221	ENST00000543545	SPRYD7	Q5W111	196 aa		11.93	□□□□□ -0.5
CPSF7-221	ENST00000543545	RUFY3	Q7L099	469 aa		11.93	□□□□□ -0.5
CPSF7-221	ENST00000543545	DGKH	Q86XP1	1220 aa		11.93	□□□□□ -0.5
CPSF7-221	ENST00000543545	CHMP4C	Q96CF2	233 aa		11.93	□□□□□ -0.5
CPSF7-221	ENST00000543545	WNK4	Q96J92	1243 aa		11.93	□□□□□ -0.5
CPSF7-221	ENST00000543545	TMEM87B	Q96K49	555 aa		11.93	□□□□□ -0.5
CPSF7-221	ENST00000543545	TTC14	Q96N46	770 aa		11.93	□□□□□ -0.5
CPSF7-221	ENST00000543545	WDR18	Q9BV38	432 aa		11.93	□□□□□ -0.5
CPSF7-221	ENST00000543545	KAT14	Q9H8E8	782 aa		11.93	□□□□□ -0.5
CPSF7-221	ENST00000543545	PDRG1	Q9NUG6	133 aa		11.93	□□□□□ -0.5
CPSF7-221	ENST00000543545	TMOD4	Q9NZQ9	345 aa		11.93	□□□□□ -0.5
CPSF7-221	ENST00000543545	NYAP2	Q9P242	653 aa		11.93	□□□□□ -0.5
CPSF7-221	ENST00000543545	NAP1L2	Q9ULW6	460 aa	Predicted RBP	11.93	□□□□□ -0.5
CPSF7-221	ENST00000543545	NAV1	Q8NEY1	1877 aa		11.92	□□□□□ -0.5
CPSF7-221	ENST00000543545	CCDC69	A6NI79	296 aa		11.92	□□□□□ -0.5
CPSF7-221	ENST00000543545	CXCL11	O14625	94 aa		11.92	□□□□□ -0.5
CPSF7-221	ENST00000543545	TOP1	P11387	765 aa	Known RBP	11.92	□□□□□ -0.5
CPSF7-221	ENST00000543545	ECE1	P42892	770 aa		11.92	□□□□□ -0.5
CPSF7-221	ENST00000543545	NEK4	P51957	841 aa		11.92	□□□□□ -0.5
CPSF7-221	ENST00000543545	EXOSC10	Q01780	885 aa	Known RBP	11.92	□□□□□ -0.5
CPSF7-221	ENST00000543545	SNAPC2	Q13487	334 aa		11.92	□□□□□ -0.5
CPSF7-221	ENST00000543545	MTMR2	Q13614	643 aa		11.92	□□□□□ -0.5
CPSF7-221	ENST00000543545	CYP4F22	Q6NT55	531 aa		11.92	□□□□□ -0.5
CPSF7-221	ENST00000543545		Q6ZUG5	572 aa		11.92	□□□□□ -0.5
CPSF7-221	ENST00000543545	RASAL3	Q86YV0	1011 aa		11.92	□□□□□ -0.5
CPSF7-221	ENST00000543545	LRRC47	Q8N1G4	583 aa	Known RBP	11.92	□□□□□ -0.5
CPSF7-221	ENST00000543545	TMTC2	Q8N394	836 aa		11.92	□□□□□ -0.5
CPSF7-221	ENST00000543545	ENAH	Q8N8S7	591 aa	Predicted RBP	11.92	□□□□□ -0.5
CPSF7-221	ENST00000543545	HHIPL1	Q96JK4	782 aa		11.92	□□□□□ -0.5
CPSF7-221	ENST00000543545	TMEM47	Q9BQJ4	181 aa		11.92	□□□□□ -0.5
CPSF7-221	ENST00000543545	GOPC	Q9HD26	462 aa		11.92	□□□□□ -0.5
CPSF7-221	ENST00000543545	GPHN	Q9NQX3	736 aa	Predicted RBP	11.92	□□□□□ -0.5
CPSF7-221	ENST00000543545	AFG3L2	Q9Y4W6	797 aa		11.92	□□□□□ -0.5
CPSF7-221	ENST00000543545		A0A1W2PRG0	241 aa		11.91	□□□□□ -0.5
CPSF7-221	ENST00000543545	C19orf81	C9J6K1	198 aa		11.91	□□□□□ -0.5
CPSF7-221	ENST00000543545	SH2B2	O14492	632 aa	Predicted RBP	11.91	□□□□□ -0.5
CPSF7-221	ENST00000543545	ZBTB48	P10074	688 aa	Predicted RBP	11.91	□□□□□ -0.5
CPSF7-221	ENST00000543545	HSPA6	P17066	643 aa		11.91	□□□□□ -0.5
CPSF7-221	ENST00000543545	GJA5	P36382	358 aa		11.91	□□□□□ -0.5
CPSF7-221	ENST00000543545	GTF2A2	P52657	109 aa		11.91	□□□□□ -0.5
CPSF7-221	ENST00000543545	USP14	P54578	494 aa		11.91	□□□□□ -0.5
CPSF7-221	ENST00000543545	HMGCS2	P54868	508 aa		11.91	□□□□□ -0.5
CPSF7-221	ENST00000543545	BACE1	P56817	501 aa		11.91	□□□□□ -0.5
CPSF7-221	ENST00000543545	COL9A3	Q14050	684 aa	Predicted RBP	11.91	□□□□□ -0.5
CPSF7-221	ENST00000543545	RABEP1	Q15276	862 aa		11.91	□□□□□ -0.5
CPSF7-221	ENST00000543545	USP17L2	Q6R6M4	530 aa		11.91	□□□□□ -0.5
CPSF7-221	ENST00000543545	SYNE3	Q6ZMZ3	975 aa		11.91	□□□□□ -0.5
CPSF7-221	ENST00000543545	GADL1	Q6ZQY3	521 aa		11.91	□□□□□ -0.5
CPSF7-221	ENST00000543545	SIAH1	Q8IUQ4	282 aa		11.91	□□□□□ -0.5
CPSF7-221	ENST00000543545	IGDCC4	Q8TDY8	1250 aa		11.91	□□□□□ -0.5
CPSF7-221	ENST00000543545	CAPNS2	Q96L46	248 aa		11.91	□□□□□ -0.5
CPSF7-221	ENST00000543545	TMX2	Q9Y320	296 aa		11.91	□□□□□ -0.5
CPSF7-221	ENST00000543545	BAZ2A	Q9UIF9	1905 aa	Known RBP	11.91	□□□□□ -0.5
CPSF7-221	ENST00000543545	PLIN4	Q96Q06	1357 aa		11.91	□□□□□ -0.5
CPSF7-221	ENST00000543545	ECM29	Q5VYK3	1845 aa		11.9	□□□□□ -0.5
CPSF7-221	ENST00000543545	WDR19	Q8NEZ3	1342 aa		11.9	□□□□□ -0.5
CPSF7-221	ENST00000543545	MYH1	P12882	1939 aa		11.9	□□□□□ -0.5
CPSF7-221	ENST00000543545	CCL15-CCL14	A0A0B4J2E2	113 aa		11.9	□□□□□ -0.5
CPSF7-221	ENST00000543545	RASSF10	A6NK89	507 aa		11.9	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 94.3 ms