RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 ABCB5Q2M3G0 1257 aa14.8□□□□□ -0.04
VPS33A-207ENST00000542790 C16orf86Q6ZW13 317 aa14.8□□□□□ -0.04
VPS33A-207ENST00000542790 FASTKD5Q7L8L6 764 aaKnown RBP14.8□□□□□ -0.04
VPS33A-207ENST00000542790 ZNF280CQ8ND82 737 aa14.8□□□□□ -0.04
VPS33A-207ENST00000542790 DYNLL2Q96FJ2 89 aa14.8□□□□□ -0.04
VPS33A-207ENST00000542790 PTPN18Q99952 460 aa14.8□□□□□ -0.04
VPS33A-207ENST00000542790 ZNF287Q9HBT7 754 aa14.8□□□□□ -0.04
VPS33A-207ENST00000542790 SCUBE2Q9NQ36 999 aa14.8□□□□□ -0.04
VPS33A-207ENST00000542790 ZBTB21Q9ULJ3 1066 aa14.8□□□□□ -0.04
VPS33A-207ENST00000542790 CCDC171Q6TFL3 1326 aa14.8□□□□□ -0.04
VPS33A-207ENST00000542790 TRIM75PA6NK02 468 aa14.79□□□□□ -0.04
VPS33A-207ENST00000542790 IGF2BP3O00425 579 aaKnown RBP eCLIP14.79□□□□□ -0.04
VPS33A-207ENST00000542790 SLC3A2P08195 630 aaKnown RBP14.79□□□□□ -0.04
VPS33A-207ENST00000542790 JAG1P78504 1218 aa14.79□□□□□ -0.04
VPS33A-207ENST00000542790 SPP2Q13103 211 aa14.79□□□□□ -0.04
VPS33A-207ENST00000542790 ALX1Q15699 326 aa14.79□□□□□ -0.04
VPS33A-207ENST00000542790 SLC44A5Q8NCS7 719 aa14.79□□□□□ -0.04
VPS33A-207ENST00000542790 CCDC17Q96LX7 622 aa14.79□□□□□ -0.04
VPS33A-207ENST00000542790 WDR18Q9BV38 432 aa14.79□□□□□ -0.04
VPS33A-207ENST00000542790 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.79□□□□□ -0.04
VPS33A-207ENST00000542790 A0A0G2JLL6 359 aaPredicted RBP14.78□□□□□ -0.04
VPS33A-207ENST00000542790 MPHOSPH10O00566 681 aaKnown RBP14.78□□□□□ -0.04
VPS33A-207ENST00000542790 HSPD1P10809 573 aaKnown RBP14.78□□□□□ -0.04
VPS33A-207ENST00000542790 HSPA8P11142 646 aaKnown RBP14.78□□□□□ -0.04
VPS33A-207ENST00000542790 RAB3GAP1Q15042 981 aa14.78□□□□□ -0.04
VPS33A-207ENST00000542790 VPS53Q5VIR6 699 aa14.78□□□□□ -0.04
VPS33A-207ENST00000542790 PRRT2Q7Z6L0 340 aaPredicted RBP14.78□□□□□ -0.04
VPS33A-207ENST00000542790 ZNF589Q86UQ0 364 aaPredicted RBP14.78□□□□□ -0.04
VPS33A-207ENST00000542790 CCDC84Q86UT8 332 aaPredicted RBP14.78□□□□□ -0.04
VPS33A-207ENST00000542790 RUFY2Q8WXA3 655 aa14.78□□□□□ -0.04
VPS33A-207ENST00000542790 CFHR5Q9BXR6 569 aa14.78□□□□□ -0.04
VPS33A-207ENST00000542790 MKNK2Q9HBH9 465 aa14.78□□□□□ -0.04
VPS33A-207ENST00000542790 ZCCHC17Q9NP64 241 aaKnown RBP14.78□□□□□ -0.04
VPS33A-207ENST00000542790 TSKSQ9UJT2 592 aa14.78□□□□□ -0.04
VPS33A-207ENST00000542790 BTBD19C9JJ37 291 aa14.77□□□□□ -0.05
VPS33A-207ENST00000542790 SMIM22K7EJ46 135 aa14.77□□□□□ -0.05
VPS33A-207ENST00000542790 FOXP2O15409 715 aa14.77□□□□□ -0.05
VPS33A-207ENST00000542790 CHMLP26374 656 aa14.77□□□□□ -0.05
VPS33A-207ENST00000542790 LBX1P52954 281 aa14.77□□□□□ -0.05
VPS33A-207ENST00000542790 PPARAQ07869 468 aa14.77□□□□□ -0.05
VPS33A-207ENST00000542790 BMP2KLQ5H9B9 411 aa14.77□□□□□ -0.05
VPS33A-207ENST00000542790 TMEM179Q6ZVK1 233 aa14.77□□□□□ -0.05
VPS33A-207ENST00000542790 ANKRD23Q86SG2 305 aa14.77□□□□□ -0.05
VPS33A-207ENST00000542790 FAM43AQ8N2R8 423 aa14.77□□□□□ -0.05
VPS33A-207ENST00000542790 ROBO3Q96MS0 1386 aa14.76□□□□□ -0.05
VPS33A-207ENST00000542790 RAD50Q92878 1312 aa14.76□□□□□ -0.05
VPS33A-207ENST00000542790 C19orf81C9J6K1 198 aa14.76□□□□□ -0.05
VPS33A-207ENST00000542790 USP17L10C9JJH3 530 aa14.76□□□□□ -0.05
VPS33A-207ENST00000542790 TBC1D8O95759 1140 aa14.76□□□□□ -0.05
VPS33A-207ENST00000542790 FGAP02671 866 aa14.76□□□□□ -0.05
VPS33A-207ENST00000542790 BACE1P56817 501 aa14.76□□□□□ -0.05
VPS33A-207ENST00000542790 PDE4BQ07343 736 aa14.76□□□□□ -0.05
VPS33A-207ENST00000542790 MOGSQ13724 837 aa14.76□□□□□ -0.05
VPS33A-207ENST00000542790 SHROOM1Q2M3G4 852 aaPredicted RBP14.76□□□□□ -0.05
VPS33A-207ENST00000542790 SKAP1Q86WV1 359 aa14.76□□□□□ -0.05
VPS33A-207ENST00000542790 PRDM10Q9NQV6 1147 aa14.76□□□□□ -0.05
VPS33A-207ENST00000542790 ZMYM6O95789 1325 aa14.75□□□□□ -0.05
VPS33A-207ENST00000542790 PDHXO00330 501 aa14.75□□□□□ -0.05
VPS33A-207ENST00000542790 AKR1B1P15121 316 aa14.75□□□□□ -0.05
VPS33A-207ENST00000542790 MTMR2Q13614 643 aa14.75□□□□□ -0.05
VPS33A-207ENST00000542790 SEPT2Q15019 361 aa14.75□□□□□ -0.05
VPS33A-207ENST00000542790 NOM1Q5C9Z4 860 aaKnown RBP14.75□□□□□ -0.05
VPS33A-207ENST00000542790 SH3D19Q5HYK7 790 aa14.75□□□□□ -0.05
VPS33A-207ENST00000542790 GADL1Q6ZQY3 521 aa14.75□□□□□ -0.05
VPS33A-207ENST00000542790 ZNF444Q8N0Y2 327 aaPredicted RBP14.75□□□□□ -0.05
VPS33A-207ENST00000542790 STK11IPQ8N1F8 1099 aa14.75□□□□□ -0.05
VPS33A-207ENST00000542790 PROCA1Q8NCQ7 364 aaPredicted RBP14.75□□□□□ -0.05
VPS33A-207ENST00000542790 ZFYVE28Q9HCC9 887 aa14.75□□□□□ -0.05
VPS33A-207ENST00000542790 TMOD4Q9NZQ9 345 aa14.75□□□□□ -0.05
VPS33A-207ENST00000542790 ANAPC4Q9UJX5 808 aa14.75□□□□□ -0.05
VPS33A-207ENST00000542790 FOCADQ5VW36 1801 aa14.75□□□□□ -0.05
VPS33A-207ENST00000542790 OTOFQ9HC10 1997 aa14.74□□□□□ -0.05
VPS33A-207ENST00000542790 AK9Q5TCS8 1911 aa14.74□□□□□ -0.05
VPS33A-207ENST00000542790 GUCY1A2P33402 732 aa14.74□□□□□ -0.05
VPS33A-207ENST00000542790 HMGCS2P54868 508 aa14.74□□□□□ -0.05
VPS33A-207ENST00000542790 CRHR2Q13324 411 aa14.74□□□□□ -0.05
VPS33A-207ENST00000542790 TAF1CQ15572 869 aaPredicted RBP14.74□□□□□ -0.05
VPS33A-207ENST00000542790 GPAT2Q6NUI2 795 aa14.74□□□□□ -0.05
VPS33A-207ENST00000542790 FEZ1Q99689 392 aa14.74□□□□□ -0.05
VPS33A-207ENST00000542790 DSCC1Q9BVC3 393 aa14.74□□□□□ -0.05
VPS33A-207ENST00000542790 KANSL2Q9H9L4 492 aa14.74□□□□□ -0.05
VPS33A-207ENST00000542790 CTNNA3Q9UI47 895 aa14.74□□□□□ -0.05
VPS33A-207ENST00000542790 AGTPBP1Q9UPW5 1226 aa14.74□□□□□ -0.05
VPS33A-207ENST00000542790 SLC45A1Q9Y2W3 748 aa14.74□□□□□ -0.05
VPS33A-207ENST00000542790 DDX60LQ5H9U9 1706 aaKnown RBP14.73□□□□□ -0.05
VPS33A-207ENST00000542790 GPR25O00155 361 aa14.73□□□□□ -0.05
VPS33A-207ENST00000542790 PRDM1O75626 825 aa14.73□□□□□ -0.05
VPS33A-207ENST00000542790 RASA1P20936 1047 aa14.73□□□□□ -0.05
VPS33A-207ENST00000542790 USP14P54578 494 aa14.73□□□□□ -0.05
VPS33A-207ENST00000542790 PABPC4Q13310 644 aaKnown RBP eCLIP14.73□□□□□ -0.05
VPS33A-207ENST00000542790 USP17L2Q6R6M4 530 aa14.73□□□□□ -0.05
VPS33A-207ENST00000542790 KIAA1683Q9H0B3 1180 aa14.73□□□□□ -0.05
VPS33A-207ENST00000542790 SIPA1L1O43166 1804 aa14.72□□□□□ -0.05
VPS33A-207ENST00000542790 ZNF213O14771 459 aa14.72□□□□□ -0.05
VPS33A-207ENST00000542790 SGSM2O43147 1006 aa14.72□□□□□ -0.05
VPS33A-207ENST00000542790 ICA1Q05084 483 aa14.72□□□□□ -0.05
VPS33A-207ENST00000542790 CTDSPL2Q05D32 466 aa14.72□□□□□ -0.05
VPS33A-207ENST00000542790 PARK7Q99497 189 aaKnown RBP14.72□□□□□ -0.05
VPS33A-207ENST00000542790 MFRPQ9BY79 579 aa14.72□□□□□ -0.05
VPS33A-207ENST00000542790 R3HDMLQ9H3Y0 253 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms