RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 SEMA3FQ13275 785 aa11.32□□□□□ -0.6
SS18-205ENST00000542420 NFIXQ14938 502 aa11.32□□□□□ -0.6
SS18-205ENST00000542420 C12orf60Q5U649 245 aa11.32□□□□□ -0.6
SS18-205ENST00000542420 GALNT17Q6IS24 598 aa11.32□□□□□ -0.6
SS18-205ENST00000542420 CCDC186Q7Z3E2 898 aa11.32□□□□□ -0.6
SS18-205ENST00000542420 CCDC144CPQ8IYA2 1237 aa11.32□□□□□ -0.6
SS18-205ENST00000542420 CCDC150Q8NCX0 1101 aa11.32□□□□□ -0.6
SS18-205ENST00000542420 MYRIPQ8NFW9 859 aa11.32□□□□□ -0.6
SS18-205ENST00000542420 FAM163AQ96GL9 167 aaPredicted RBP11.32□□□□□ -0.6
SS18-205ENST00000542420 RBM17Q96I25 401 aaKnown RBP11.32□□□□□ -0.6
SS18-205ENST00000542420 CRAMP1Q96RY5 1269 aa11.32□□□□□ -0.6
SS18-205ENST00000542420 LZTS2Q9BRK4 669 aa11.32□□□□□ -0.6
SS18-205ENST00000542420 PRDM10Q9NQV6 1147 aa11.32□□□□□ -0.6
SS18-205ENST00000542420 SUGT1Q9Y2Z0 365 aa11.32□□□□□ -0.6
SS18-205ENST00000542420 R3HCC1Q9Y3T6 440 aaKnown RBP11.32□□□□□ -0.6
SS18-205ENST00000542420 IL1R1P14778 569 aa11.31□□□□□ -0.6
SS18-205ENST00000542420 PTGS1P23219 599 aa11.31□□□□□ -0.6
SS18-205ENST00000542420 CALML3P27482 149 aa11.31□□□□□ -0.6
SS18-205ENST00000542420 OLFM4Q6UX06 510 aa11.31□□□□□ -0.6
SS18-205ENST00000542420 STK11IPQ8N1F8 1099 aa11.31□□□□□ -0.6
SS18-205ENST00000542420 AOPEPQ8N6M6 819 aa11.31□□□□□ -0.6
SS18-205ENST00000542420 TBC1D22AQ8WUA7 517 aa11.31□□□□□ -0.6
SS18-205ENST00000542420 NUP133Q8WUM0 1156 aa11.31□□□□□ -0.6
SS18-205ENST00000542420 TAOK2Q9UL54 1235 aa11.31□□□□□ -0.6
SS18-205ENST00000542420 IQSEC3Q9UPP2 1182 aaPredicted RBP11.31□□□□□ -0.6
SS18-205ENST00000542420 ANKRD31Q8N7Z5 1873 aa11.31□□□□□ -0.6
SS18-205ENST00000542420 TRIM75PA6NK02 468 aa11.31□□□□□ -0.6
SS18-205ENST00000542420 SMARCA1P28370 1054 aa11.31□□□□□ -0.6
SS18-205ENST00000542420 MARCKSP29966 332 aaPredicted RBP11.31□□□□□ -0.6
SS18-205ENST00000542420 GUCY1A2P33402 732 aa11.31□□□□□ -0.6
SS18-205ENST00000542420 CHAF1AQ13111 956 aaPredicted RBP11.31□□□□□ -0.6
SS18-205ENST00000542420 TNFRSF25Q93038 417 aa11.31□□□□□ -0.6
SS18-205ENST00000542420 ZKSCAN3Q9BRR0 538 aa11.31□□□□□ -0.6
SS18-205ENST00000542420 KIF2AO00139 706 aaPredicted RBP11.3□□□□□ -0.6
SS18-205ENST00000542420 NRDCO43847 1150 aa11.3□□□□□ -0.6
SS18-205ENST00000542420 PPFIA3O75145 1194 aa11.3□□□□□ -0.6
SS18-205ENST00000542420 MDM2Q00987 491 aaPredicted RBP11.3□□□□□ -0.6
SS18-205ENST00000542420 MYL5Q02045 173 aa11.3□□□□□ -0.6
SS18-205ENST00000542420 DPCR1Q3MIW9 517 aa11.3□□□□□ -0.6
SS18-205ENST00000542420 PRR5LQ6MZQ0 368 aa11.3□□□□□ -0.6
SS18-205ENST00000542420 LRRC8AQ8IWT6 810 aa11.3□□□□□ -0.6
SS18-205ENST00000542420 MLKLQ8NB16 471 aa11.3□□□□□ -0.6
SS18-205ENST00000542420 SPC24Q8NBT2 197 aa11.3□□□□□ -0.6
SS18-205ENST00000542420 CNNM3Q8NE01 707 aa11.3□□□□□ -0.6
SS18-205ENST00000542420 KLRK1P26718 216 aa11.3□□□□□ -0.6
SS18-205ENST00000542420 PRDX5P30044 214 aa11.3□□□□□ -0.6
SS18-205ENST00000542420 SARSP49591 514 aaKnown RBP11.3□□□□□ -0.6
SS18-205ENST00000542420 NCAPHQ15003 741 aa11.3□□□□□ -0.6
SS18-205ENST00000542420 PFKFB3Q16875 520 aaPredicted RBP11.3□□□□□ -0.6
SS18-205ENST00000542420 FAM196AQ6ZSG2 479 aa11.3□□□□□ -0.6
SS18-205ENST00000542420 DAGLBQ8NCG7 672 aa11.3□□□□□ -0.6
SS18-205ENST00000542420 SPATA20Q8TB22 786 aa11.3□□□□□ -0.6
SS18-205ENST00000542420 RPGRQ92834 1020 aaKnown RBP11.3□□□□□ -0.6
SS18-205ENST00000542420 FAM205AQ6ZU69 1335 aa11.29□□□□□ -0.6
SS18-205ENST00000542420 PTF1AQ7RTS3 328 aa11.29□□□□□ -0.6
SS18-205ENST00000542420 ZNF830Q96NB3 372 aaPredicted RBP11.29□□□□□ -0.6
SS18-205ENST00000542420 TMEM51Q9NW97 253 aa11.29□□□□□ -0.6
SS18-205ENST00000542420 PYCARDQ9ULZ3 195 aa11.29□□□□□ -0.6
SS18-205ENST00000542420 PLIN4Q96Q06 1357 aa11.29□□□□□ -0.6
SS18-205ENST00000542420 AFF2P51816 1311 aa11.29□□□□□ -0.6
SS18-205ENST00000542420 UQCRHLA0A096LP55 91 aa11.29□□□□□ -0.6
SS18-205ENST00000542420 NPHP1O15259 732 aa11.29□□□□□ -0.6
SS18-205ENST00000542420 UQCRHP07919 91 aa11.29□□□□□ -0.6
SS18-205ENST00000542420 SCG2P13521 617 aa11.29□□□□□ -0.6
SS18-205ENST00000542420 GRM4Q14833 912 aa11.29□□□□□ -0.6
SS18-205ENST00000542420 DNTTIP2Q5QJE6 756 aaKnown RBP11.29□□□□□ -0.6
SS18-205ENST00000542420 ARL6IP4Q66PJ3 421 aaKnown RBP11.29□□□□□ -0.6
SS18-205ENST00000542420 METTL16Q86W50 562 aaKnown RBP11.29□□□□□ -0.6
SS18-205ENST00000542420 TFCP2L1Q9NZI6 479 aa11.29□□□□□ -0.6
SS18-205ENST00000542420 ANKIB1Q9P2G1 1089 aa11.29□□□□□ -0.6
SS18-205ENST00000542420 KCNJ14Q9UNX9 436 aa11.29□□□□□ -0.6
SS18-205ENST00000542420 GAKO14976 1311 aa11.28□□□□□ -0.6
SS18-205ENST00000542420 MYO3BQ8WXR4 1341 aa11.28□□□□□ -0.6
SS18-205ENST00000542420 GPR75-ASB3A0A0A6YYF3 556 aa11.28□□□□□ -0.6
SS18-205ENST00000542420 TSPY2A6NKD2 308 aa11.28□□□□□ -0.6
SS18-205ENST00000542420 SMC2O95347 1197 aa11.28□□□□□ -0.6
SS18-205ENST00000542420 GYS1P13807 737 aa11.28□□□□□ -0.6
SS18-205ENST00000542420 ERCC5P28715 1186 aaPredicted RBP11.28□□□□□ -0.6
SS18-205ENST00000542420 ATP2C1P98194 919 aaPredicted RBP11.28□□□□□ -0.6
SS18-205ENST00000542420 ORC2Q13416 577 aaPredicted RBP11.28□□□□□ -0.6
SS18-205ENST00000542420 POSTNQ15063 836 aa11.28□□□□□ -0.6
SS18-205ENST00000542420 SYCP1Q15431 976 aa11.28□□□□□ -0.6
SS18-205ENST00000542420 PPP4R3BQ5MIZ7 849 aa11.28□□□□□ -0.6
SS18-205ENST00000542420 CCDC148Q8NFR7 591 aa11.28□□□□□ -0.6
SS18-205ENST00000542420 KAT14Q9H8E8 782 aa11.28□□□□□ -0.6
SS18-205ENST00000542420 GGA1Q9UJY5 639 aa11.28□□□□□ -0.6
SS18-205ENST00000542420 GREB1LQ9C091 1923 aaPredicted RBP11.28□□□□□ -0.6
SS18-205ENST00000542420 CCP110O43303 1012 aa11.27□□□□□ -0.6
SS18-205ENST00000542420 NOVP48745 357 aa11.27□□□□□ -0.6
SS18-205ENST00000542420 MEX3CQ5U5Q3 659 aaKnown RBP11.27□□□□□ -0.6
SS18-205ENST00000542420 RCSD1Q6JBY9 416 aa11.27□□□□□ -0.6
SS18-205ENST00000542420 SH3RF1Q7Z6J0 888 aa11.27□□□□□ -0.6
SS18-205ENST00000542420 SEPT12Q8IYM1 358 aa11.27□□□□□ -0.6
SS18-205ENST00000542420 CCDC112Q8NEF3 446 aa11.27□□□□□ -0.6
SS18-205ENST00000542420 ENOX1Q8TC92 643 aaKnown RBP11.27□□□□□ -0.6
SS18-205ENST00000542420 CACTINQ8WUQ7 758 aaKnown RBP11.27□□□□□ -0.6
SS18-205ENST00000542420 CCDC94Q9BW85 323 aaPredicted RBP11.27□□□□□ -0.6
SS18-205ENST00000542420 MCM9Q9NXL9 1143 aa11.27□□□□□ -0.6
SS18-205ENST00000542420 PAXBP1Q9Y5B6 917 aa11.27□□□□□ -0.6
SS18-205ENST00000542420 hCG_1984214I3L0E3 225 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms