RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 FANCBQ8NB91 859 aa8.6□□□□□ -1.03
VPS53-205ENST00000541903 PNMA1Q8ND90 353 aa8.6□□□□□ -1.03
VPS53-205ENST00000541903 FOXD4L4Q8WXT5 416 aaPredicted RBP8.6□□□□□ -1.03
VPS53-205ENST00000541903 WASF1Q92558 559 aa8.6□□□□□ -1.03
VPS53-205ENST00000541903 IL17RBQ9NRM6 502 aa8.6□□□□□ -1.03
VPS53-205ENST00000541903 GPRC5DQ9NZD1 345 aa8.6□□□□□ -1.03
VPS53-205ENST00000541903 ORC3Q9UBD5 711 aaPredicted RBP8.6□□□□□ -1.03
VPS53-205ENST00000541903 HERC5Q9UII4 1024 aaKnown RBP8.6□□□□□ -1.03
VPS53-205ENST00000541903 ATP6V1DQ9Y5K8 247 aa8.6□□□□□ -1.03
VPS53-205ENST00000541903 MYH1P12882 1939 aa8.6□□□□□ -1.03
VPS53-205ENST00000541903 CNTNAP1P78357 1384 aa8.6□□□□□ -1.03
VPS53-205ENST00000541903 FAM196BA6NMK8 535 aa8.59□□□□□ -1.03
VPS53-205ENST00000541903 DDX11L8A8MPP1 907 aa8.59□□□□□ -1.03
VPS53-205ENST00000541903 GOLGA6L22H0YM25 854 aa8.59□□□□□ -1.03
VPS53-205ENST00000541903 DTNBO60941 627 aa8.59□□□□□ -1.03
VPS53-205ENST00000541903 F13A1P00488 732 aa8.59□□□□□ -1.03
VPS53-205ENST00000541903 IFNAR1P17181 557 aa8.59□□□□□ -1.03
VPS53-205ENST00000541903 ADD1P35611 737 aaKnown RBP8.59□□□□□ -1.03
VPS53-205ENST00000541903 FOSBP53539 338 aa8.59□□□□□ -1.03
VPS53-205ENST00000541903 AKAP17AQ02040 695 aaKnown RBP8.59□□□□□ -1.03
VPS53-205ENST00000541903 SSRP1Q08945 709 aaKnown RBP8.59□□□□□ -1.03
VPS53-205ENST00000541903 TROAPQ12815 778 aa8.59□□□□□ -1.03
VPS53-205ENST00000541903 CERKLQ49MI3 558 aaPredicted RBP8.59□□□□□ -1.03
VPS53-205ENST00000541903 CEP95Q96GE4 821 aa8.59□□□□□ -1.03
VPS53-205ENST00000541903 TMEM47Q9BQJ4 181 aa8.59□□□□□ -1.03
VPS53-205ENST00000541903 SLC26A6Q9BXS9 759 aa8.59□□□□□ -1.03
VPS53-205ENST00000541903 DNAJC18Q9H819 358 aa8.59□□□□□ -1.03
VPS53-205ENST00000541903 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.59□□□□□ -1.03
VPS53-205ENST00000541903 FAM217BQ9NTX9 383 aaPredicted RBP8.59□□□□□ -1.03
VPS53-205ENST00000541903 MTMR6Q9Y217 621 aa8.59□□□□□ -1.03
VPS53-205ENST00000541903 ZDHHC9Q9Y397 364 aa8.59□□□□□ -1.03
VPS53-205ENST00000541903 IGKV6D-41A0A0C4DH26 115 aa8.58□□□□□ -1.04
VPS53-205ENST00000541903 PPFIA3O75145 1194 aa8.58□□□□□ -1.04
VPS53-205ENST00000541903 DDNO94850 711 aaPredicted RBP8.58□□□□□ -1.04
VPS53-205ENST00000541903 FMNL1O95466 1100 aaPredicted RBP8.58□□□□□ -1.04
VPS53-205ENST00000541903 TTLL1O95922 423 aa8.58□□□□□ -1.04
VPS53-205ENST00000541903 EGFRP00533 1210 aa8.58□□□□□ -1.04
VPS53-205ENST00000541903 FDPSP14324 419 aaKnown RBP8.58□□□□□ -1.04
VPS53-205ENST00000541903 PTMSP20962 102 aa8.58□□□□□ -1.04
VPS53-205ENST00000541903 GNAQP50148 359 aa8.58□□□□□ -1.04
VPS53-205ENST00000541903 TRIM29Q14134 588 aa8.58□□□□□ -1.04
VPS53-205ENST00000541903 NBR1Q14596 966 aa8.58□□□□□ -1.04
VPS53-205ENST00000541903 RASA3Q14644 834 aa8.58□□□□□ -1.04
VPS53-205ENST00000541903 GRM4Q14833 912 aa8.58□□□□□ -1.04
VPS53-205ENST00000541903 NTRK3Q16288 839 aa8.58□□□□□ -1.04
VPS53-205ENST00000541903 ABCB5Q2M3G0 1257 aa8.58□□□□□ -1.04
VPS53-205ENST00000541903 DPY19L2Q6NUT2 758 aa8.58□□□□□ -1.04
VPS53-205ENST00000541903 TATDN1Q6P1N9 297 aa8.58□□□□□ -1.04
VPS53-205ENST00000541903 TMEM179Q6ZVK1 233 aa8.58□□□□□ -1.04
VPS53-205ENST00000541903 TMTC3Q6ZXV5 915 aa8.58□□□□□ -1.04
VPS53-205ENST00000541903 CDC37L1Q7L3B6 337 aa8.58□□□□□ -1.04
VPS53-205ENST00000541903 METTL16Q86W50 562 aaKnown RBP8.58□□□□□ -1.04
VPS53-205ENST00000541903 APOBEC3FQ8IUX4 373 aaKnown RBP8.58□□□□□ -1.04
VPS53-205ENST00000541903 PHKBQ93100 1093 aa8.58□□□□□ -1.04
VPS53-205ENST00000541903 C8orf76Q96K31 380 aa8.58□□□□□ -1.04
VPS53-205ENST00000541903 MAP3K14Q99558 947 aa8.58□□□□□ -1.04
VPS53-205ENST00000541903 ALG1Q9BT22 464 aa8.58□□□□□ -1.04
VPS53-205ENST00000541903 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.58□□□□□ -1.04
VPS53-205ENST00000541903 TMEM39BQ9GZU3 492 aa8.58□□□□□ -1.04
VPS53-205ENST00000541903 CABP5Q9NP86 173 aa8.58□□□□□ -1.04
VPS53-205ENST00000541903 MTMR4Q9NYA4 1195 aa8.58□□□□□ -1.04
VPS53-205ENST00000541903 HACL1Q9UJ83 578 aa8.58□□□□□ -1.04
VPS53-205ENST00000541903 ZC3H4Q9UPT8 1303 aaKnown RBP8.57□□□□□ -1.04
VPS53-205ENST00000541903 TBC1D12O60347 775 aa8.57□□□□□ -1.04
VPS53-205ENST00000541903 PLEKHA8P1O95397 391 aa8.57□□□□□ -1.04
VPS53-205ENST00000541903 DEXIO95424 95 aa8.57□□□□□ -1.04
VPS53-205ENST00000541903 BAG4O95429 457 aaKnown RBP8.57□□□□□ -1.04
VPS53-205ENST00000541903 PARP1P09874 1014 aaKnown RBP8.57□□□□□ -1.04
VPS53-205ENST00000541903 MCM4P33991 863 aa8.57□□□□□ -1.04
VPS53-205ENST00000541903 NOVP48745 357 aa8.57□□□□□ -1.04
VPS53-205ENST00000541903 ATP2B2Q01814 1243 aa8.57□□□□□ -1.04
VPS53-205ENST00000541903 ICA1Q05084 483 aa8.57□□□□□ -1.04
VPS53-205ENST00000541903 ANGEL2Q5VTE6 544 aaKnown RBP8.57□□□□□ -1.04
VPS53-205ENST00000541903 CLEC17AQ6ZS10 378 aa8.57□□□□□ -1.04
VPS53-205ENST00000541903 LRRC47Q8N1G4 583 aaKnown RBP8.57□□□□□ -1.04
VPS53-205ENST00000541903 RGS22Q8NE09 1264 aa8.57□□□□□ -1.04
VPS53-205ENST00000541903 TRPM4Q8TD43 1214 aa8.57□□□□□ -1.04
VPS53-205ENST00000541903 HOOK2Q96ED9 719 aa8.57□□□□□ -1.04
VPS53-205ENST00000541903 LZTS2Q9BRK4 669 aa8.57□□□□□ -1.04
VPS53-205ENST00000541903 RNF26Q9BY78 433 aaPredicted RBP8.57□□□□□ -1.04
VPS53-205ENST00000541903 KANSL2Q9H9L4 492 aa8.57□□□□□ -1.04
VPS53-205ENST00000541903 GGA3Q9NZ52 723 aa8.57□□□□□ -1.04
VPS53-205ENST00000541903 RBM27Q9P2N5 1060 aaKnown RBP8.57□□□□□ -1.04
VPS53-205ENST00000541903 MTMR7Q9Y216 660 aa8.57□□□□□ -1.04
VPS53-205ENST00000541903 ASTN2O75129 1339 aaPredicted RBP8.56□□□□□ -1.04
VPS53-205ENST00000541903 CNTNAP5Q8WYK1 1306 aa8.56□□□□□ -1.04
VPS53-205ENST00000541903 PRPF3O43395 683 aaKnown RBP8.56□□□□□ -1.04
VPS53-205ENST00000541903 GDF11O95390 407 aa8.56□□□□□ -1.04
VPS53-205ENST00000541903 SLURP2P0DP57 97 aa8.56□□□□□ -1.04
VPS53-205ENST00000541903 XBP1P17861 261 aa8.56□□□□□ -1.04
VPS53-205ENST00000541903 EPS15P42566 896 aa8.56□□□□□ -1.04
VPS53-205ENST00000541903 SEPT2Q15019 361 aa8.56□□□□□ -1.04
VPS53-205ENST00000541903 MCTP1Q6DN14 999 aa8.56□□□□□ -1.04
VPS53-205ENST00000541903 NBPF11Q86T75 865 aa8.56□□□□□ -1.04
VPS53-205ENST00000541903 FERMT3Q86UX7 667 aa8.56□□□□□ -1.04
VPS53-205ENST00000541903 CLEC10AQ8IUN9 316 aa8.56□□□□□ -1.04
VPS53-205ENST00000541903 CMTR1Q8N1G2 835 aaKnown RBP8.56□□□□□ -1.04
VPS53-205ENST00000541903 CCDC82Q8N4S0 544 aa8.56□□□□□ -1.04
VPS53-205ENST00000541903 DEFB129Q9H1M3 183 aa8.56□□□□□ -1.04
VPS53-205ENST00000541903 ZSCAN16Q9H4T2 348 aaPredicted RBP8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms