RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488	TSNAXIP1	Q2TAA8	658 aa		7	□□□□□ -1.29
PRKDC-210	ENST00000541488	LETMD1	Q6P1Q0	360 aa		7	□□□□□ -1.29
PRKDC-210	ENST00000541488	GIPC2	Q8TF65	315 aa		7	□□□□□ -1.29
PRKDC-210	ENST00000541488	NOC4L	Q9BVI4	516 aa	Known RBP	7	□□□□□ -1.29
PRKDC-210	ENST00000541488		H3BS24	57 aa		6.99	□□□□□ -1.29
PRKDC-210	ENST00000541488	F13A1	P00488	732 aa		6.99	□□□□□ -1.29
PRKDC-210	ENST00000541488	RLBP1	P12271	317 aa		6.99	□□□□□ -1.29
PRKDC-210	ENST00000541488	RPL6	Q02878	288 aa	Known RBP	6.99	□□□□□ -1.29
PRKDC-210	ENST00000541488	CAMK2G	Q13555	558 aa	Predicted RBP	6.99	□□□□□ -1.29
PRKDC-210	ENST00000541488	SFRP5	Q5T4F7	317 aa		6.99	□□□□□ -1.29
PRKDC-210	ENST00000541488	PRR23B	Q6ZRT6	265 aa		6.99	□□□□□ -1.29
PRKDC-210	ENST00000541488	RELL1	Q8IUW5	271 aa		6.99	□□□□□ -1.29
PRKDC-210	ENST00000541488	MFSD2A	Q8NA29	543 aa		6.99	□□□□□ -1.29
PRKDC-210	ENST00000541488	HSPA12B	Q96MM6	686 aa		6.99	□□□□□ -1.29
PRKDC-210	ENST00000541488	TNKS2	Q9H2K2	1166 aa		6.99	□□□□□ -1.29
PRKDC-210	ENST00000541488	UPK3BL1	B0FP48	263 aa		6.98	□□□□□ -1.29
PRKDC-210	ENST00000541488	UPK3BL2	E5RIL1	263 aa		6.98	□□□□□ -1.29
PRKDC-210	ENST00000541488	NPIPB6	E9PJ23	425 aa		6.98	□□□□□ -1.29
PRKDC-210	ENST00000541488	IGF2BP3	O00425	579 aa	Known RBP eCLIP	6.98	□□□□□ -1.29
PRKDC-210	ENST00000541488	NFIB	O00712	420 aa		6.98	□□□□□ -1.29
PRKDC-210	ENST00000541488	GRIN3B	O60391	1043 aa		6.98	□□□□□ -1.29
PRKDC-210	ENST00000541488	BPNT1	O95861	308 aa		6.98	□□□□□ -1.29
PRKDC-210	ENST00000541488	CST3	P01034	146 aa	Predicted RBP	6.98	□□□□□ -1.29
PRKDC-210	ENST00000541488	ZP2	Q05996	745 aa		6.98	□□□□□ -1.29
PRKDC-210	ENST00000541488	ANGEL2	Q5VTE6	544 aa	Known RBP	6.98	□□□□□ -1.29
PRKDC-210	ENST00000541488	SLC23A3	Q6PIS1	610 aa		6.98	□□□□□ -1.29
PRKDC-210	ENST00000541488	TMEM87B	Q96K49	555 aa		6.98	□□□□□ -1.29
PRKDC-210	ENST00000541488	MAPK8IP1	Q9UQF2	711 aa		6.98	□□□□□ -1.29
PRKDC-210	ENST00000541488	PLCG1	P19174	1290 aa		6.97	□□□□□ -1.29
PRKDC-210	ENST00000541488	PDE4B	Q07343	736 aa		6.97	□□□□□ -1.29
PRKDC-210	ENST00000541488	SNAP47	Q5SQN1	464 aa		6.97	□□□□□ -1.29
PRKDC-210	ENST00000541488	DBX2	Q6ZNG2	339 aa		6.97	□□□□□ -1.29
PRKDC-210	ENST00000541488	MFSD4A	Q8N468	514 aa		6.97	□□□□□ -1.29
PRKDC-210	ENST00000541488	ASB11	Q8WXH4	323 aa		6.97	□□□□□ -1.29
PRKDC-210	ENST00000541488	RELT	Q969Z4	430 aa		6.97	□□□□□ -1.29
PRKDC-210	ENST00000541488	ACSF2	Q96CM8	615 aa	Predicted RBP	6.97	□□□□□ -1.29
PRKDC-210	ENST00000541488	ATP13A1	Q9HD20	1204 aa		6.97	□□□□□ -1.29
PRKDC-210	ENST00000541488	COPRS	Q9NQ92	184 aa		6.97	□□□□□ -1.29
PRKDC-210	ENST00000541488	TLR3	O15455	904 aa	Known RBP	6.96	□□□□□ -1.3
PRKDC-210	ENST00000541488	ERCC3	P19447	782 aa		6.96	□□□□□ -1.3
PRKDC-210	ENST00000541488	LMNB2	Q03252	620 aa		6.96	□□□□□ -1.3
PRKDC-210	ENST00000541488	GOLM1	Q8NBJ4	401 aa		6.96	□□□□□ -1.3
PRKDC-210	ENST00000541488	FAM13C	Q8NE31	585 aa		6.96	□□□□□ -1.3
PRKDC-210	ENST00000541488	FBXO27	Q8NI29	283 aa		6.96	□□□□□ -1.3
PRKDC-210	ENST00000541488	TMEM74	Q96NL1	305 aa		6.96	□□□□□ -1.3
PRKDC-210	ENST00000541488	KBTBD4	Q9NVX7	518 aa		6.96	□□□□□ -1.3
PRKDC-210	ENST00000541488	KLHL3	Q9UH77	587 aa		6.96	□□□□□ -1.3
PRKDC-210	ENST00000541488	SNX11	Q9Y5W9	270 aa		6.96	□□□□□ -1.3
PRKDC-210	ENST00000541488	PITPNM2	Q9BZ72	1349 aa		6.96	□□□□□ -1.3
PRKDC-210	ENST00000541488	CAP2	P40123	477 aa		6.95	□□□□□ -1.3
PRKDC-210	ENST00000541488	FYB2	Q5VWT5	728 aa		6.95	□□□□□ -1.3
PRKDC-210	ENST00000541488	MRPL41	Q8IXM3	137 aa	Known RBP	6.95	□□□□□ -1.3
PRKDC-210	ENST00000541488	RHOV	Q96L33	236 aa		6.95	□□□□□ -1.3
PRKDC-210	ENST00000541488	CARS2	Q9HA77	564 aa	Known RBP	6.95	□□□□□ -1.3
PRKDC-210	ENST00000541488	CAPN6	Q9Y6Q1	641 aa		6.95	□□□□□ -1.3
PRKDC-210	ENST00000541488	FAM221A	A4D161	298 aa		6.94	□□□□□ -1.3
PRKDC-210	ENST00000541488	WASH4P	A8MWX3	477 aa		6.94	□□□□□ -1.3
PRKDC-210	ENST00000541488	CILP	O75339	1184 aa		6.94	□□□□□ -1.3
PRKDC-210	ENST00000541488	CLCN7	P51798	805 aa		6.94	□□□□□ -1.3
PRKDC-210	ENST00000541488	ZNF326	Q5BKZ1	582 aa	Known RBP	6.94	□□□□□ -1.3
PRKDC-210	ENST00000541488	TMCO4	Q5TGY1	634 aa		6.94	□□□□□ -1.3
PRKDC-210	ENST00000541488	SLC6A19	Q695T7	634 aa		6.94	□□□□□ -1.3
PRKDC-210	ENST00000541488	MCAT	Q8IVS2	390 aa	Known RBP	6.94	□□□□□ -1.3
PRKDC-210	ENST00000541488	GATAD2B	Q8WXI9	593 aa		6.94	□□□□□ -1.3
PRKDC-210	ENST00000541488	ZSWIM5	Q9P217	1185 aa		6.94	□□□□□ -1.3
PRKDC-210	ENST00000541488	TNK2	Q07912	1038 aa		6.93	□□□□□ -1.3
PRKDC-210	ENST00000541488	DIEXF	Q68CQ4	756 aa	Known RBP	6.93	□□□□□ -1.3
PRKDC-210	ENST00000541488	MPZL3	Q6UWV2	235 aa		6.93	□□□□□ -1.3
PRKDC-210	ENST00000541488	UBE2F	Q969M7	185 aa		6.93	□□□□□ -1.3
PRKDC-210	ENST00000541488	RSRP1	Q9BUV0	290 aa		6.93	□□□□□ -1.3
PRKDC-210	ENST00000541488	SEMA3G	Q9NS98	782 aa		6.93	□□□□□ -1.3
PRKDC-210	ENST00000541488	CTNND2	Q9UQB3	1225 aa		6.93	□□□□□ -1.3
PRKDC-210	ENST00000541488	POLR3K	Q9Y2Y1	108 aa	Predicted RBP	6.93	□□□□□ -1.3
PRKDC-210	ENST00000541488	TACC3	Q9Y6A5	838 aa		6.93	□□□□□ -1.3
PRKDC-210	ENST00000541488	ZBTB7C	A1YPR0	619 aa		6.92	□□□□□ -1.3
PRKDC-210	ENST00000541488	CHURC1-FNTB	B4DL54	471 aa		6.92	□□□□□ -1.3
PRKDC-210	ENST00000541488	CYP7A1	P22680	504 aa		6.92	□□□□□ -1.3
PRKDC-210	ENST00000541488	KCNA10	Q16322	511 aa		6.92	□□□□□ -1.3
PRKDC-210	ENST00000541488	ZNF746	Q6NUN9	644 aa	Predicted RBP	6.92	□□□□□ -1.3
PRKDC-210	ENST00000541488	CD320	Q9NPF0	282 aa		6.92	□□□□□ -1.3
PRKDC-210	ENST00000541488	REV1	Q9UBZ9	1251 aa		6.92	□□□□□ -1.3
PRKDC-210	ENST00000541488	ST14	Q9Y5Y6	855 aa		6.92	□□□□□ -1.3
PRKDC-210	ENST00000541488	GLI1	P08151	1106 aa		6.91	□□□□□ -1.3
PRKDC-210	ENST00000541488	TNNI2	P48788	182 aa		6.91	□□□□□ -1.3
PRKDC-210	ENST00000541488	PWP1	Q13610	501 aa		6.91	□□□□□ -1.3
PRKDC-210	ENST00000541488	CIAPIN1	Q6FI81	312 aa		6.91	□□□□□ -1.3
PRKDC-210	ENST00000541488	FBXL19	Q6PCT2	694 aa		6.91	□□□□□ -1.3
PRKDC-210	ENST00000541488	FBXO15	Q8NCQ5	510 aa	Predicted RBP	6.91	□□□□□ -1.3
PRKDC-210	ENST00000541488	GGT7	Q9UJ14	662 aa		6.91	□□□□□ -1.3
PRKDC-210	ENST00000541488	ADAM30	Q9UKF2	790 aa		6.91	□□□□□ -1.3
PRKDC-210	ENST00000541488	FOXD2	O60548	495 aa	Predicted RBP	6.9	□□□□□ -1.3
PRKDC-210	ENST00000541488	DNAJA2	O60884	412 aa		6.9	□□□□□ -1.3
PRKDC-210	ENST00000541488	LRRN2	O75325	713 aa		6.9	□□□□□ -1.3
PRKDC-210	ENST00000541488	HTR3B	O95264	441 aa		6.9	□□□□□ -1.3
PRKDC-210	ENST00000541488	GART	P22102	1010 aa		6.9	□□□□□ -1.3
PRKDC-210	ENST00000541488	KRTAP10-2	P60368	255 aa		6.9	□□□□□ -1.3
PRKDC-210	ENST00000541488	CCDC84	Q86UT8	332 aa	Predicted RBP	6.9	□□□□□ -1.3
PRKDC-210	ENST00000541488	PHACTR4	Q8IZ21	702 aa		6.9	□□□□□ -1.3
PRKDC-210	ENST00000541488	DNAJB8	Q8NHS0	232 aa		6.9	□□□□□ -1.3
PRKDC-210	ENST00000541488	BAHD1	Q8TBE0	780 aa	Predicted RBP	6.9	□□□□□ -1.3

Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms