RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 CCDC82Q8N4S0 544 aa16.44■□□□□ 0.22
SFSWAP-210ENST00000541286 HELLSQ9NRZ9 838 aa16.44■□□□□ 0.22
SFSWAP-210ENST00000541286 TOMM22Q9NS69 142 aa16.44■□□□□ 0.22
SFSWAP-210ENST00000541286 SAP30BPQ9UHR5 308 aaKnown RBP16.44■□□□□ 0.22
SFSWAP-210ENST00000541286 LMOD1P29536 600 aaPredicted RBP16.43■□□□□ 0.22
SFSWAP-210ENST00000541286 IARSP41252 1262 aaKnown RBP16.43■□□□□ 0.22
SFSWAP-210ENST00000541286 SNW1Q13573 536 aaKnown RBP16.43■□□□□ 0.22
SFSWAP-210ENST00000541286 DPCR1Q3MIW9 517 aa16.43■□□□□ 0.22
SFSWAP-210ENST00000541286 AIDAQ96BJ3 306 aa16.43■□□□□ 0.22
SFSWAP-210ENST00000541286 ALDH8A1Q9H2A2 487 aaPredicted RBP16.43■□□□□ 0.22
SFSWAP-210ENST00000541286 CCDC88AQ3V6T2 1871 aa16.43■□□□□ 0.22
SFSWAP-210ENST00000541286 FGAP02671 866 aa16.43■□□□□ 0.22
SFSWAP-210ENST00000541286 PICALMQ13492 652 aa16.43■□□□□ 0.22
SFSWAP-210ENST00000541286 TMC6Q7Z403 805 aa16.43■□□□□ 0.22
SFSWAP-210ENST00000541286 SH3RF3Q8TEJ3 882 aaPredicted RBP16.43■□□□□ 0.22
SFSWAP-210ENST00000541286 RSPH14Q9UHP6 348 aa16.43■□□□□ 0.22
SFSWAP-210ENST00000541286 LCMT1Q9UIC8 334 aa16.43■□□□□ 0.22
SFSWAP-210ENST00000541286 ANKRD65E5RJM6 399 aa16.43■□□□□ 0.22
SFSWAP-210ENST00000541286 ATP2B1P20020 1258 aa16.43■□□□□ 0.22
SFSWAP-210ENST00000541286 KRBA2Q6ZNG9 492 aa16.43■□□□□ 0.22
SFSWAP-210ENST00000541286 LLPHQ9BRT6 129 aaKnown RBP16.43■□□□□ 0.22
SFSWAP-210ENST00000541286 EPB41L4AQ9HCS5 686 aaPredicted RBP16.43■□□□□ 0.22
SFSWAP-210ENST00000541286 ZNF541Q9H0D2 1346 aa16.42■□□□□ 0.22
SFSWAP-210ENST00000541286 KIF13BQ9NQT8 1826 aa16.42■□□□□ 0.22
SFSWAP-210ENST00000541286 FDPSP14324 419 aaKnown RBP16.42■□□□□ 0.22
SFSWAP-210ENST00000541286 CLCN6P51797 869 aa16.42■□□□□ 0.22
SFSWAP-210ENST00000541286 TCP10Q12799 353 aa16.42■□□□□ 0.22
SFSWAP-210ENST00000541286 MICU3Q86XE3 530 aa16.42■□□□□ 0.22
SFSWAP-210ENST00000541286 HOMER1Q86YM7 354 aa16.42■□□□□ 0.22
SFSWAP-210ENST00000541286 DSCC1Q9BVC3 393 aa16.42■□□□□ 0.22
SFSWAP-210ENST00000541286 COA1Q9GZY4 146 aa16.42■□□□□ 0.22
SFSWAP-210ENST00000541286 IFNKQ9P0W0 207 aa16.42■□□□□ 0.22
SFSWAP-210ENST00000541286 FEZ2Q9UHY8 353 aaPredicted RBP16.42■□□□□ 0.22
SFSWAP-210ENST00000541286 TACC3Q9Y6A5 838 aa16.42■□□□□ 0.22
SFSWAP-210ENST00000541286 BRCA1P38398 1863 aaKnown RBP16.42■□□□□ 0.22
SFSWAP-210ENST00000541286 PRDM1O75626 825 aa16.42■□□□□ 0.22
SFSWAP-210ENST00000541286 SLU7O95391 586 aaKnown RBP16.42■□□□□ 0.22
SFSWAP-210ENST00000541286 EXOSC10Q01780 885 aaKnown RBP16.42■□□□□ 0.22
SFSWAP-210ENST00000541286 CTDSPL2Q05D32 466 aa16.42■□□□□ 0.22
SFSWAP-210ENST00000541286 CDAN1Q8IWY9 1227 aa16.42■□□□□ 0.22
SFSWAP-210ENST00000541286 MYL10Q9BUA6 226 aa16.42■□□□□ 0.22
SFSWAP-210ENST00000541286 ARAP2Q8WZ64 1704 aa16.42■□□□□ 0.22
SFSWAP-210ENST00000541286 CLRN2A0PK11 232 aa16.41■□□□□ 0.22
SFSWAP-210ENST00000541286 CTAGE5O15320 804 aa16.41■□□□□ 0.22
SFSWAP-210ENST00000541286 DACT2Q5SW24 774 aa16.41■□□□□ 0.22
SFSWAP-210ENST00000541286 RBM43Q6ZSC3 357 aaKnown RBP16.41■□□□□ 0.22
SFSWAP-210ENST00000541286 RTKN2Q8IZC4 609 aa16.41■□□□□ 0.22
SFSWAP-210ENST00000541286 APPBP2Q92624 585 aa16.41■□□□□ 0.22
SFSWAP-210ENST00000541286 ZNF512BQ96KM6 892 aaPredicted RBP16.41■□□□□ 0.22
SFSWAP-210ENST00000541286 NAT10Q9H0A0 1025 aaKnown RBP16.41■□□□□ 0.22
SFSWAP-210ENST00000541286 FAM196BA6NMK8 535 aa16.41■□□□□ 0.22
SFSWAP-210ENST00000541286 ZNF213O14771 459 aa16.41■□□□□ 0.22
SFSWAP-210ENST00000541286 NFXL1Q6ZNB6 911 aa16.41■□□□□ 0.22
SFSWAP-210ENST00000541286 MAPKAPK5Q8IW41 473 aa16.41■□□□□ 0.22
SFSWAP-210ENST00000541286 ZFPM1Q8IX07 1006 aa16.41■□□□□ 0.22
SFSWAP-210ENST00000541286 PHKBQ93100 1093 aa16.41■□□□□ 0.22
SFSWAP-210ENST00000541286 SLC4A4Q9Y6R1 1079 aa16.41■□□□□ 0.22
SFSWAP-210ENST00000541286 MINDY4BA8MYZ0 360 aa16.41■□□□□ 0.22
SFSWAP-210ENST00000541286 SPTLC2O15270 562 aa16.41■□□□□ 0.22
SFSWAP-210ENST00000541286 TRDNQ13061 729 aa16.41■□□□□ 0.22
SFSWAP-210ENST00000541286 SAMD7Q7Z3H4 446 aa16.41■□□□□ 0.22
SFSWAP-210ENST00000541286 DHX40Q8IX18 779 aaKnown RBP16.41■□□□□ 0.22
SFSWAP-210ENST00000541286 EYA3Q99504 573 aa16.41■□□□□ 0.22
SFSWAP-210ENST00000541286 RTFDC1Q9BY42 306 aaPredicted RBP16.41■□□□□ 0.22
SFSWAP-210ENST00000541286 SLC3A2P08195 630 aaKnown RBP16.4■□□□□ 0.22
SFSWAP-210ENST00000541286 GOLGA8FQ08AF8 430 aa16.4■□□□□ 0.22
SFSWAP-210ENST00000541286 GOLGA8DPQ0D2H9 430 aa16.4■□□□□ 0.22
SFSWAP-210ENST00000541286 NFIAQ12857 509 aa16.4■□□□□ 0.22
SFSWAP-210ENST00000541286 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.4■□□□□ 0.22
SFSWAP-210ENST00000541286 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.4■□□□□ 0.22
SFSWAP-210ENST00000541286 STRBPQ96SI9 672 aaKnown RBP16.4■□□□□ 0.22
SFSWAP-210ENST00000541286 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.4■□□□□ 0.225e-11■□□□□ 9.7
SFSWAP-210ENST00000541286 FZD1Q9UP38 647 aa16.4■□□□□ 0.22
SFSWAP-210ENST00000541286 PRAMEF18Q5VWM3 479 aa16.4■□□□□ 0.22
SFSWAP-210ENST00000541286 TMC4Q7Z404 712 aa16.4■□□□□ 0.22
SFSWAP-210ENST00000541286 NIM1KQ8IY84 436 aa16.4■□□□□ 0.22
SFSWAP-210ENST00000541286 TGFBRAP1Q8WUH2 860 aa16.4■□□□□ 0.22
SFSWAP-210ENST00000541286 RNF181Q9P0P0 153 aa16.4■□□□□ 0.22
SFSWAP-210ENST00000541286 BAZ2AQ9UIF9 1905 aaKnown RBP16.4■□□□□ 0.22
SFSWAP-210ENST00000541286 SPECC1Q5M775 1068 aa16.4■□□□□ 0.22
SFSWAP-210ENST00000541286 ZNF526Q8TF50 670 aaPredicted RBP16.4■□□□□ 0.22
SFSWAP-210ENST00000541286 XPO4Q9C0E2 1151 aaKnown RBP16.4■□□□□ 0.22
SFSWAP-210ENST00000541286 USP17L3A6NCW0 530 aa16.39■□□□□ 0.21
SFSWAP-210ENST00000541286 USP17L4A6NCW7 530 aa16.39■□□□□ 0.21
SFSWAP-210ENST00000541286 DDNO94850 711 aaPredicted RBP16.39■□□□□ 0.21
SFSWAP-210ENST00000541286 USP17L8P0C7I0 530 aa16.39■□□□□ 0.21
SFSWAP-210ENST00000541286 BTDP43251 543 aa16.39■□□□□ 0.21
SFSWAP-210ENST00000541286 PLA2G4AP47712 749 aa16.39■□□□□ 0.21
SFSWAP-210ENST00000541286 TTF1Q15361 905 aaPredicted RBP16.39■□□□□ 0.21
SFSWAP-210ENST00000541286 RRP12Q5JTH9 1297 aaKnown RBP16.39■□□□□ 0.21
SFSWAP-210ENST00000541286 USP17L1Q7RTZ2 530 aa16.39■□□□□ 0.21
SFSWAP-210ENST00000541286 CCAR2Q8N163 923 aaKnown RBP16.39■□□□□ 0.21
SFSWAP-210ENST00000541286 RIOK1Q9BRS2 568 aaKnown RBP16.39■□□□□ 0.21
SFSWAP-210ENST00000541286 FHOD1Q9Y613 1164 aa16.39■□□□□ 0.21
SFSWAP-210ENST00000541286 DLEC1Q9Y238 1755 aa16.39■□□□□ 0.21
SFSWAP-210ENST00000541286 MAGEB6P1A0A0J9YX57 407 aa16.39■□□□□ 0.21
SFSWAP-210ENST00000541286 JDP2Q8WYK2 163 aa16.39■□□□□ 0.21
SFSWAP-210ENST00000541286 SMARCE1Q969G3 411 aa16.39■□□□□ 0.21
SFSWAP-210ENST00000541286 DAGLAQ9Y4D2 1042 aa16.39■□□□□ 0.21
SFSWAP-210ENST00000541286 KIF28PB7ZC32 967 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms