RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 TBC1D9Q6ZT07 1266 aa10.05□□□□□ -0.8
CHD4-208ENST00000540960 C16orf59Q7L2K0 433 aa10.05□□□□□ -0.8
CHD4-208ENST00000540960 UBE3BQ7Z3V4 1068 aa10.05□□□□□ -0.8
CHD4-208ENST00000540960 CCDC84Q86UT8 332 aaPredicted RBP10.05□□□□□ -0.8
CHD4-208ENST00000540960 COL26A1Q96A83 441 aa10.05□□□□□ -0.8
CHD4-208ENST00000540960 SUCLG2Q96I99 432 aa10.05□□□□□ -0.8
CHD4-208ENST00000540960 PLA2G12BQ9BX93 195 aa10.05□□□□□ -0.8
CHD4-208ENST00000540960 NKX2-4Q9H2Z4 354 aa10.05□□□□□ -0.8
CHD4-208ENST00000540960 BICC1Q9H694 974 aaKnown RBP10.05□□□□□ -0.8
CHD4-208ENST00000540960 GPR108Q9NPR9 543 aa10.05□□□□□ -0.8
CHD4-208ENST00000540960 YBX2Q9Y2T7 364 aaKnown RBP10.05□□□□□ -0.8
CHD4-208ENST00000540960 A0A1B0GUL6 1792 aa10.05□□□□□ -0.8
CHD4-208ENST00000540960 TRANK1O15050 2925 aa10.05□□□□□ -0.8
CHD4-208ENST00000540960 BRWD1Q9NSI6 2320 aa10.05□□□□□ -0.8
CHD4-208ENST00000540960 RFXAPO00287 272 aa10.04□□□□□ -0.8
CHD4-208ENST00000540960 DNM1LO00429 736 aa10.04□□□□□ -0.8
CHD4-208ENST00000540960 SLURP2P0DP57 97 aa10.04□□□□□ -0.8
CHD4-208ENST00000540960 XRCC5P13010 732 aaKnown RBP10.04□□□□□ -0.8
CHD4-208ENST00000540960 ZKSCAN1P17029 563 aaPredicted RBP10.04□□□□□ -0.8
CHD4-208ENST00000540960 PTPRAP18433 802 aa10.04□□□□□ -0.8
CHD4-208ENST00000540960 IL15P40933 162 aaPredicted RBP10.04□□□□□ -0.8
CHD4-208ENST00000540960 TLE2Q04725 743 aa10.04□□□□□ -0.8
CHD4-208ENST00000540960 FPGSQ05932 587 aa10.04□□□□□ -0.8
CHD4-208ENST00000540960 SNX17Q15036 470 aa10.04□□□□□ -0.8
CHD4-208ENST00000540960 CSPP1Q1MSJ5 1256 aa10.04□□□□□ -0.8
CHD4-208ENST00000540960 FAM83AQ86UY5 434 aa10.04□□□□□ -0.8
CHD4-208ENST00000540960 PRSS33Q8NF86 280 aa10.04□□□□□ -0.8
CHD4-208ENST00000540960 HERVK_113Q902F9 699 aa10.04□□□□□ -0.8
CHD4-208ENST00000540960 ANKRD2Q9GZV1 360 aa10.04□□□□□ -0.8
CHD4-208ENST00000540960 AKAP2Q9Y2D5 859 aa10.04□□□□□ -0.8
CHD4-208ENST00000540960 A0A0G2JMZ2 1700 aa10.04□□□□□ -0.8
CHD4-208ENST00000540960 TRIM6-TRIM34B2RNG4 842 aa10.03□□□□□ -0.8
CHD4-208ENST00000540960 SMARCA5O60264 1052 aaPredicted RBP10.03□□□□□ -0.8
CHD4-208ENST00000540960 GFRA3O60609 400 aa10.03□□□□□ -0.8
CHD4-208ENST00000540960 RGS20O76081 388 aa10.03□□□□□ -0.8
CHD4-208ENST00000540960 CCDC57Q2TAC2 916 aa10.03□□□□□ -0.8
CHD4-208ENST00000540960 KIAA1211Q6ZU35 1233 aa10.03□□□□□ -0.8
CHD4-208ENST00000540960 C15orf52Q6ZUT6 534 aaKnown RBP10.03□□□□□ -0.8
CHD4-208ENST00000540960 HSCBQ8IWL3 235 aa10.03□□□□□ -0.8
CHD4-208ENST00000540960 LPAR1Q92633 364 aa10.03□□□□□ -0.8
CHD4-208ENST00000540960 USP6NLQ92738 828 aa10.03□□□□□ -0.8
CHD4-208ENST00000540960 FERMT2Q96AC1 680 aa10.03□□□□□ -0.8
CHD4-208ENST00000540960 NUDT12Q9BQG2 462 aa10.03□□□□□ -0.8
CHD4-208ENST00000540960 FLRT1Q9NZU1 646 aa10.03□□□□□ -0.8
CHD4-208ENST00000540960 DDX20Q9UHI6 824 aaKnown RBP10.03□□□□□ -0.8
CHD4-208ENST00000540960 AGTPBP1Q9UPW5 1226 aa10.03□□□□□ -0.8
CHD4-208ENST00000540960 SALL3Q9BXA9 1300 aa10.03□□□□□ -0.8
CHD4-208ENST00000540960 TRIM75PA6NK02 468 aa10.02□□□□□ -0.81
CHD4-208ENST00000540960 PHF20L1A8MW92 1017 aa10.02□□□□□ -0.81
CHD4-208ENST00000540960 MCM2P49736 904 aa10.02□□□□□ -0.81
CHD4-208ENST00000540960 ANAPC15P60006 121 aa10.02□□□□□ -0.81
CHD4-208ENST00000540960 RABEP1Q15276 862 aa10.02□□□□□ -0.81
CHD4-208ENST00000540960 IER5LQ5T953 404 aa10.02□□□□□ -0.81
CHD4-208ENST00000540960 RASIP1Q5U651 963 aa10.02□□□□□ -0.81
CHD4-208ENST00000540960 HFE2Q6ZVN8 426 aa10.02□□□□□ -0.81
CHD4-208ENST00000540960 AACSQ86V21 672 aa10.02□□□□□ -0.81
CHD4-208ENST00000540960 SNX21Q969T3 373 aa10.02□□□□□ -0.81
CHD4-208ENST00000540960 EVI5LQ96CN4 794 aa10.02□□□□□ -0.81
CHD4-208ENST00000540960 HOOK2Q96ED9 719 aa10.02□□□□□ -0.81
CHD4-208ENST00000540960 MTCH2Q9Y6C9 303 aa10.02□□□□□ -0.81
CHD4-208ENST00000540960 CHD8Q9HCK8 2581 aa10.02□□□□□ -0.81
CHD4-208ENST00000540960 GSPT1P15170 499 aaKnown RBP10.01□□□□□ -0.81
CHD4-208ENST00000540960 RAG1P15918 1043 aa10.01□□□□□ -0.81
CHD4-208ENST00000540960 CNGA1P29973 690 aa10.01□□□□□ -0.81
CHD4-208ENST00000540960 IGHMBP2P38935 993 aaKnown RBP10.01□□□□□ -0.81
CHD4-208ENST00000540960 ADCYAP1R1P41586 468 aa10.01□□□□□ -0.81
CHD4-208ENST00000540960 CASP7P55210 303 aa10.01□□□□□ -0.81
CHD4-208ENST00000540960 TCP10Q12799 353 aa10.01□□□□□ -0.81
CHD4-208ENST00000540960 IFIT5Q13325 482 aaKnown RBP10.01□□□□□ -0.81
CHD4-208ENST00000540960 TAF7LQ5H9L4 462 aa10.01□□□□□ -0.81
CHD4-208ENST00000540960 TMEM240Q5SV17 173 aa10.01□□□□□ -0.81
CHD4-208ENST00000540960 ANO1Q5XXA6 986 aa10.01□□□□□ -0.81
CHD4-208ENST00000540960 APOBEC3HQ6NTF7 200 aaKnown RBP10.01□□□□□ -0.81
CHD4-208ENST00000540960 LMBR1LQ6UX01 489 aa10.01□□□□□ -0.81
CHD4-208ENST00000540960 ERMP1Q7Z2K6 904 aa10.01□□□□□ -0.81
CHD4-208ENST00000540960 ZNF804AQ7Z570 1209 aa10.01□□□□□ -0.81
CHD4-208ENST00000540960 GJD3Q8N144 294 aa10.01□□□□□ -0.81
CHD4-208ENST00000540960 TRPV1Q8NER1 839 aa10.01□□□□□ -0.81
CHD4-208ENST00000540960 FAM86C1Q9NVL1 165 aa10.01□□□□□ -0.81
CHD4-208ENST00000540960 TACC3Q9Y6A5 838 aa10.01□□□□□ -0.81
CHD4-208ENST00000540960 KIAA0355O15063 1070 aa10□□□□□ -0.81
CHD4-208ENST00000540960 MYCNP04198 464 aaPredicted RBP10□□□□□ -0.81
CHD4-208ENST00000540960 CLTBP09497 229 aa10□□□□□ -0.81
CHD4-208ENST00000540960 MYOGP15173 224 aa10□□□□□ -0.81
CHD4-208ENST00000540960 GCLCP48506 637 aaPredicted RBP10□□□□□ -0.81
CHD4-208ENST00000540960 ZFPM1Q8IX07 1006 aa10□□□□□ -0.81
CHD4-208ENST00000540960 SCYL3Q8IZE3 742 aa10□□□□□ -0.81
CHD4-208ENST00000540960 HLA-CQ95604 372 aa10□□□□□ -0.81
CHD4-208ENST00000540960 RILPL2Q969X0 211 aa10□□□□□ -0.81
CHD4-208ENST00000540960 KAZALD1Q96I82 304 aa10□□□□□ -0.81
CHD4-208ENST00000540960 SLC28A3Q9HAS3 691 aa10□□□□□ -0.81
CHD4-208ENST00000540960 TXNRD2Q9NNW7 524 aa10□□□□□ -0.81
CHD4-208ENST00000540960 IL1RAPL2Q9NP60 686 aa10□□□□□ -0.81
CHD4-208ENST00000540960 DIAPH3Q9NSV4 1193 aa10□□□□□ -0.81
CHD4-208ENST00000540960 CEP126Q9P2H0 1117 aa10□□□□□ -0.81
CHD4-208ENST00000540960 COG5Q9UP83 839 aa10□□□□□ -0.81
CHD4-208ENST00000540960 CHMP3Q9Y3E7 222 aa10□□□□□ -0.81
CHD4-208ENST00000540960 RAD50Q92878 1312 aa10□□□□□ -0.81
CHD4-208ENST00000540960 TRIOO75962 3097 aa10□□□□□ -0.81
CHD4-208ENST00000540960 RFX7Q2KHR2 1363 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms