RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 TREML2Q5T2D2 321 aa27.06■■□□□ 1.92
SFSWAP-204ENST00000535399 ZNF296Q8WUU4 475 aaPredicted RBP27.06■■□□□ 1.92
SFSWAP-204ENST00000535399 GNL3Q9BVP2 549 aaKnown RBP eCLIP27.06■■□□□ 1.92
SFSWAP-204ENST00000535399 SLC45A1Q9Y2W3 748 aa27.06■■□□□ 1.92
SFSWAP-204ENST00000535399 PRDM1O75626 825 aa27.05■■□□□ 1.92
SFSWAP-204ENST00000535399 SLC3A2P08195 630 aaKnown RBP27.05■■□□□ 1.92
SFSWAP-204ENST00000535399 SIAH1Q8IUQ4 282 aa27.05■■□□□ 1.92
SFSWAP-204ENST00000535399 KIAA1683Q9H0B3 1180 aa27.05■■□□□ 1.92
SFSWAP-204ENST00000535399 ZNF287Q9HBT7 754 aa27.05■■□□□ 1.92
SFSWAP-204ENST00000535399 EMILIN3Q9NT22 766 aa27.05■■□□□ 1.92
SFSWAP-204ENST00000535399 RAD50Q92878 1312 aa27.05■■□□□ 1.92
SFSWAP-204ENST00000535399 CTDSPL2Q05D32 466 aa27.04■■□□□ 1.92
SFSWAP-204ENST00000535399 USP17L2Q6R6M4 530 aa27.04■■□□□ 1.92
SFSWAP-204ENST00000535399 CLEC10AQ8IUN9 316 aa27.04■■□□□ 1.92
SFSWAP-204ENST00000535399 RUFY2Q8WXA3 655 aa27.04■■□□□ 1.92
SFSWAP-204ENST00000535399 DSCC1Q9BVC3 393 aa27.04■■□□□ 1.92
SFSWAP-204ENST00000535399 TMOD4Q9NZQ9 345 aa27.04■■□□□ 1.92
SFSWAP-204ENST00000535399 DDX52Q9Y2R4 599 aaKnown RBP eCLIP27.04■■□□□ 1.92
SFSWAP-204ENST00000535399 TACC3Q9Y6A5 838 aa27.04■■□□□ 1.92
SFSWAP-204ENST00000535399 PTPRFP10586 1907 aa27.04■■□□□ 1.92
SFSWAP-204ENST00000535399 A0A1W2PRG0 241 aa27.03■■□□□ 1.92
SFSWAP-204ENST00000535399 TLR2O60603 784 aa27.03■■□□□ 1.92
SFSWAP-204ENST00000535399 PDE4BQ07343 736 aa27.03■■□□□ 1.92
SFSWAP-204ENST00000535399 C12orf42Q96LP6 360 aa27.03■■□□□ 1.92
SFSWAP-204ENST00000535399 ADGRA2Q96PE1 1338 aa27.03■■□□□ 1.92
SFSWAP-204ENST00000535399 PARK7Q99497 189 aaKnown RBP27.03■■□□□ 1.92
SFSWAP-204ENST00000535399 FEZ1Q99689 392 aa27.03■■□□□ 1.92
SFSWAP-204ENST00000535399 FKTNO75072 461 aa27.02■■□□□ 1.92
SFSWAP-204ENST00000535399 CYP2C8P10632 490 aa27.02■■□□□ 1.92
SFSWAP-204ENST00000535399 ICA1Q05084 483 aa27.02■■□□□ 1.92
SFSWAP-204ENST00000535399 ZNF444Q8N0Y2 327 aaPredicted RBP27.02■■□□□ 1.92
SFSWAP-204ENST00000535399 INCENPQ9NQS7 918 aa27.02■■□□□ 1.92
SFSWAP-204ENST00000535399 USP14P54578 494 aa27.01■■□□□ 1.91
SFSWAP-204ENST00000535399 ZYXQ15942 572 aaKnown RBP27.01■■□□□ 1.91
SFSWAP-204ENST00000535399 KANSL2Q9H9L4 492 aa27.01■■□□□ 1.91
SFSWAP-204ENST00000535399 IGKV6D-41A0A0C4DH26 115 aa27■■□□□ 1.91
SFSWAP-204ENST00000535399 SGSM2O43147 1006 aa27■■□□□ 1.91
SFSWAP-204ENST00000535399 FGRP09769 529 aa27■■□□□ 1.91
SFSWAP-204ENST00000535399 HAND2P61296 217 aa27■■□□□ 1.91
SFSWAP-204ENST00000535399 C17orf99Q6UX52 265 aa27■■□□□ 1.91
SFSWAP-204ENST00000535399 LOC285556D6RIA3 1793 aa26.99■■□□□ 1.91
SFSWAP-204ENST00000535399 HOXA7P31268 230 aaPredicted RBP26.99■■□□□ 1.91
SFSWAP-204ENST00000535399 NBPF3Q9H094 633 aa26.99■■□□□ 1.91
SFSWAP-204ENST00000535399 TMX2Q9Y320 296 aa26.99■■□□□ 1.91
SFSWAP-204ENST00000535399 ORC4O43929 436 aa26.98■■□□□ 1.91
SFSWAP-204ENST00000535399 EEF2P13639 858 aaKnown RBP26.98■■□□□ 1.91
SFSWAP-204ENST00000535399 SP3Q02447 781 aa26.98■■□□□ 1.91
SFSWAP-204ENST00000535399 PABPC4Q13310 644 aaKnown RBP eCLIP26.98■■□□□ 1.91
SFSWAP-204ENST00000535399 FAM47AQ5JRC9 791 aa26.98■■□□□ 1.91
SFSWAP-204ENST00000535399 NEDD1Q8NHV4 660 aa26.98■■□□□ 1.91
SFSWAP-204ENST00000535399 ASCC2Q9H1I8 757 aaPredicted RBP26.98■■□□□ 1.91
SFSWAP-204ENST00000535399 ARHGEF10LQ9HCE6 1279 aa26.98■■□□□ 1.91
SFSWAP-204ENST00000535399 CPA4Q9UI42 421 aa26.98■■□□□ 1.91
SFSWAP-204ENST00000535399 PNMA3Q9UL41 463 aa26.98■■□□□ 1.91
SFSWAP-204ENST00000535399 CASP8AP2Q9UKL3 1982 aa26.98■■□□□ 1.91
SFSWAP-204ENST00000535399 PLIN4Q96Q06 1357 aa26.97■■□□□ 1.91
SFSWAP-204ENST00000535399 TFAP4Q01664 338 aa26.97■■□□□ 1.91
SFSWAP-204ENST00000535399 TBC1D10CQ8IV04 446 aa26.97■■□□□ 1.91
SFSWAP-204ENST00000535399 VCAM1P19320 739 aa26.96■■□□□ 1.91
SFSWAP-204ENST00000535399 OSBPP22059 807 aa26.96■■□□□ 1.91
SFSWAP-204ENST00000535399 PTH1RQ03431 593 aa26.96■■□□□ 1.91
SFSWAP-204ENST00000535399 KIAA1755Q5JYT7 1200 aa26.96■■□□□ 1.91
SFSWAP-204ENST00000535399 NYAP2Q9P242 653 aa26.96■■□□□ 1.91
SFSWAP-204ENST00000535399 CTNNA3Q9UI47 895 aa26.96■■□□□ 1.91
SFSWAP-204ENST00000535399 ZNF213O14771 459 aa26.95■■□□□ 1.9
SFSWAP-204ENST00000535399 TSPY3P0CV98 308 aa26.95■■□□□ 1.9
SFSWAP-204ENST00000535399 TSPY8P0CW00 308 aa26.95■■□□□ 1.9
SFSWAP-204ENST00000535399 BCRP11274 1271 aa26.95■■□□□ 1.9
SFSWAP-204ENST00000535399 CAP1Q01518 475 aa26.95■■□□□ 1.9
SFSWAP-204ENST00000535399 STAG1Q8WVM7 1258 aa26.95■■□□□ 1.9
SFSWAP-204ENST00000535399 CEP95Q96GE4 821 aa26.95■■□□□ 1.9
SFSWAP-204ENST00000535399 SH2D4AQ9H788 454 aa26.95■■□□□ 1.9
SFSWAP-204ENST00000535399 MYH8P13535 1937 aa26.94■■□□□ 1.9
SFSWAP-204ENST00000535399 GREB1LQ9C091 1923 aaPredicted RBP26.94■■□□□ 1.9
SFSWAP-204ENST00000535399 ATP2B2Q01814 1243 aa26.94■■□□□ 1.9
SFSWAP-204ENST00000535399 AKNAD1Q5T1N1 836 aa26.94■■□□□ 1.9
SFSWAP-204ENST00000535399 CD99L2Q8TCZ2 262 aa26.94■■□□□ 1.9
SFSWAP-204ENST00000535399 SMCR8Q8TEV9 937 aaPredicted RBP26.94■■□□□ 1.9
SFSWAP-204ENST00000535399 ERO1AQ96HE7 468 aa26.94■■□□□ 1.9
SFSWAP-204ENST00000535399 ESYT1Q9BSJ8 1104 aa26.94■■□□□ 1.9
SFSWAP-204ENST00000535399 VCPKMTQ9H867 229 aa26.94■■□□□ 1.9
SFSWAP-204ENST00000535399 MTMR4Q9NYA4 1195 aa26.94■■□□□ 1.9
SFSWAP-204ENST00000535399 USP17L15C9J2P7 530 aa26.93■■□□□ 1.9
SFSWAP-204ENST00000535399 USP17L13C9JLJ4 530 aa26.93■■□□□ 1.9
SFSWAP-204ENST00000535399 USP17L11C9JVI0 530 aa26.93■■□□□ 1.9
SFSWAP-204ENST00000535399 USP17L18D6R9N7 530 aa26.93■■□□□ 1.9
SFSWAP-204ENST00000535399 USP17L22D6RA61 530 aa26.93■■□□□ 1.9
SFSWAP-204ENST00000535399 USP17L17D6RBQ6 530 aa26.93■■□□□ 1.9
SFSWAP-204ENST00000535399 USP17L19D6RCP7 530 aa26.93■■□□□ 1.9
SFSWAP-204ENST00000535399 USP17L20D6RJB6 530 aa26.93■■□□□ 1.9
SFSWAP-204ENST00000535399 PCP11498 1178 aaKnown RBP26.93■■□□□ 1.9
SFSWAP-204ENST00000535399 IRX3P78415 501 aaPredicted RBP26.93■■□□□ 1.9
SFSWAP-204ENST00000535399 USP17L24Q0WX57 530 aa26.93■■□□□ 1.9
SFSWAP-204ENST00000535399 CTU1Q7Z7A3 348 aaKnown RBP26.93■■□□□ 1.9
SFSWAP-204ENST00000535399 P2RX7Q99572 595 aaKnown RBP26.93■■□□□ 1.9
SFSWAP-204ENST00000535399 TSPY2A6NKD2 308 aa26.92■■□□□ 1.9
SFSWAP-204ENST00000535399 RANBP6O60518 1105 aaKnown RBP26.92■■□□□ 1.9
SFSWAP-204ENST00000535399 IMMTQ16891 758 aaKnown RBP26.92■■□□□ 1.9
SFSWAP-204ENST00000535399 CATSPERGQ6ZRH7 1159 aa26.92■■□□□ 1.9
SFSWAP-204ENST00000535399 LPAR1Q92633 364 aa26.92■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms