RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 NFIAQ12857 509 aa5.15□□□□□ -1.58
CSMD3-210ENST00000534172 DOC2BQ14184 412 aa5.15□□□□□ -1.58
CSMD3-210ENST00000534172 GIMAP6Q6P9H5 292 aa5.15□□□□□ -1.58
CSMD3-210ENST00000534172 NLRC3Q7RTR2 1065 aa5.15□□□□□ -1.58
CSMD3-210ENST00000534172 DNAJC2Q99543 621 aaKnown RBP5.15□□□□□ -1.58
CSMD3-210ENST00000534172 CORINQ9Y5Q5 1042 aa5.15□□□□□ -1.58
CSMD3-210ENST00000534172 MYO15BQ96JP2 1530 aa5.15□□□□□ -1.58
CSMD3-210ENST00000534172 IGF2BP3O00425 579 aaKnown RBP eCLIP5.15□□□□□ -1.59
CSMD3-210ENST00000534172 RGS13O14921 159 aa5.15□□□□□ -1.59
CSMD3-210ENST00000534172 ITGB2P05107 769 aa5.15□□□□□ -1.59
CSMD3-210ENST00000534172 NME1P15531 152 aaKnown RBP5.15□□□□□ -1.59
CSMD3-210ENST00000534172 CASP7P55210 303 aa5.15□□□□□ -1.59
CSMD3-210ENST00000534172 BBS9Q3SYG4 887 aa5.15□□□□□ -1.59
CSMD3-210ENST00000534172 NKAPLQ5M9Q1 402 aa5.15□□□□□ -1.59
CSMD3-210ENST00000534172 PHACTR4Q8IZ21 702 aa5.15□□□□□ -1.59
CSMD3-210ENST00000534172 SMARCC1Q92922 1105 aaPredicted RBP5.15□□□□□ -1.59
CSMD3-210ENST00000534172 ATG4CQ96DT6 458 aa5.15□□□□□ -1.59
CSMD3-210ENST00000534172 TBC1D32Q96NH3 1257 aa5.15□□□□□ -1.59
CSMD3-210ENST00000534172 MKNK2Q9HBH9 465 aa5.15□□□□□ -1.59
CSMD3-210ENST00000534172 C1GALT1Q9NS00 363 aa5.15□□□□□ -1.59
CSMD3-210ENST00000534172 CEP131Q9UPN4 1083 aa5.15□□□□□ -1.59
CSMD3-210ENST00000534172 GUCY2CP25092 1073 aa5.14□□□□□ -1.59
CSMD3-210ENST00000534172 RSPO4Q2I0M5 234 aaPredicted RBP5.14□□□□□ -1.59
CSMD3-210ENST00000534172 PRAMEF13Q5VWM6 474 aa5.14□□□□□ -1.59
CSMD3-210ENST00000534172 MCF2L2Q86YR7 1114 aa5.14□□□□□ -1.59
CSMD3-210ENST00000534172 CKAP2LQ8IYA6 745 aa5.14□□□□□ -1.59
CSMD3-210ENST00000534172 PSMG3-AS1Q96PY0 264 aa5.14□□□□□ -1.59
CSMD3-210ENST00000534172 FBRSQ9HAH7 460 aa5.14□□□□□ -1.59
CSMD3-210ENST00000534172 PRKAG3Q9UGI9 489 aa5.14□□□□□ -1.59
CSMD3-210ENST00000534172 KLHL3Q9UH77 587 aa5.14□□□□□ -1.59
CSMD3-210ENST00000534172 PPM1GO15355 546 aaPredicted RBP5.14□□□□□ -1.59
CSMD3-210ENST00000534172 KIR3DL1P43629 444 aa5.14□□□□□ -1.59
CSMD3-210ENST00000534172 ARSHQ5FYA8 562 aa5.14□□□□□ -1.59
CSMD3-210ENST00000534172 OVOS1Q6IE37 1185 aa5.14□□□□□ -1.59
CSMD3-210ENST00000534172 C22orf34Q6ZV56 151 aa5.14□□□□□ -1.59
CSMD3-210ENST00000534172 DHX38Q92620 1227 aaKnown RBP5.14□□□□□ -1.59
CSMD3-210ENST00000534172 SHDQ96IW2 340 aa5.14□□□□□ -1.59
CSMD3-210ENST00000534172 OSBPL1AQ9BXW6 950 aa5.14□□□□□ -1.59
CSMD3-210ENST00000534172 CHMP4AQ9BY43 222 aa5.14□□□□□ -1.59
CSMD3-210ENST00000534172 PPT2Q9UMR5 302 aa5.14□□□□□ -1.59
CSMD3-210ENST00000534172 MAPK8IP1Q9UQF2 711 aa5.14□□□□□ -1.59
CSMD3-210ENST00000534172 HMX2A2RU54 273 aa5.13□□□□□ -1.59
CSMD3-210ENST00000534172 LETMD1Q6P1Q0 360 aa5.13□□□□□ -1.59
CSMD3-210ENST00000534172 LSRQ86X29 649 aaPredicted RBP5.13□□□□□ -1.59
CSMD3-210ENST00000534172 ASPNQ9BXN1 380 aa5.13□□□□□ -1.59
CSMD3-210ENST00000534172 CHURC1-FNTBB4DL54 471 aa5.13□□□□□ -1.59
CSMD3-210ENST00000534172 DYRK3O43781 588 aa5.13□□□□□ -1.59
CSMD3-210ENST00000534172 TOP6BLQ8N6T0 577 aa5.13□□□□□ -1.59
CSMD3-210ENST00000534172 MIPEPQ99797 713 aa5.13□□□□□ -1.59
CSMD3-210ENST00000534172 DUSP23Q9BVJ7 150 aa5.13□□□□□ -1.59
CSMD3-210ENST00000534172 LNPKQ9C0E8 428 aa5.13□□□□□ -1.59
CSMD3-210ENST00000534172 PHAXQ9H814 394 aaKnown RBP5.13□□□□□ -1.59
CSMD3-210ENST00000534172 KCNH3Q9ULD8 1083 aa5.13□□□□□ -1.59
CSMD3-210ENST00000534172 FAM87AP0C7U9 286 aa5.12□□□□□ -1.59
CSMD3-210ENST00000534172 NAT2P11245 290 aa5.12□□□□□ -1.59
CSMD3-210ENST00000534172 GTF2F1P35269 517 aaKnown RBP eCLIP5.12□□□□□ -1.59
CSMD3-210ENST00000534172 GRIK1P39086 918 aa5.12□□□□□ -1.59
CSMD3-210ENST00000534172 ARHGAP27Q6ZUM4 889 aa5.12□□□□□ -1.59
CSMD3-210ENST00000534172 PRDM5Q9NQX1 630 aaPredicted RBP5.12□□□□□ -1.59
CSMD3-210ENST00000534172 RBL2Q08999 1139 aa5.12□□□□□ -1.59
CSMD3-210ENST00000534172 NKG7Q16617 165 aa5.12□□□□□ -1.59
CSMD3-210ENST00000534172 INTS5Q6P9B9 1019 aaKnown RBP5.12□□□□□ -1.59
CSMD3-210ENST00000534172 RNF141Q8WVD5 230 aa5.12□□□□□ -1.59
CSMD3-210ENST00000534172 ANAPC16Q96DE5 110 aa5.12□□□□□ -1.59
CSMD3-210ENST00000534172 ACTR10Q9NZ32 417 aa5.12□□□□□ -1.59
CSMD3-210ENST00000534172 LEMD3Q9Y2U8 911 aa5.12□□□□□ -1.59
CSMD3-210ENST00000534172 GNAT3A8MTJ3 354 aa5.11□□□□□ -1.59
CSMD3-210ENST00000534172 U2SURPO15042 1029 aaKnown RBP5.11□□□□□ -1.59
CSMD3-210ENST00000534172 FXNQ16595 210 aa5.11□□□□□ -1.59
CSMD3-210ENST00000534172 SFRP5Q5T4F7 317 aa5.11□□□□□ -1.59
CSMD3-210ENST00000534172 FBXL18Q96ME1 805 aa5.11□□□□□ -1.59
CSMD3-210ENST00000534172 KIF2CQ99661 725 aa5.11□□□□□ -1.59
CSMD3-210ENST00000534172 TPX2Q9ULW0 747 aaKnown RBP5.11□□□□□ -1.59
CSMD3-210ENST00000534172 UPK3BL1B0FP48 263 aa5.11□□□□□ -1.59
CSMD3-210ENST00000534172 UPK3BL2E5RIL1 263 aa5.11□□□□□ -1.59
CSMD3-210ENST00000534172 CLEC3AO75596 197 aa5.11□□□□□ -1.59
CSMD3-210ENST00000534172 CDK5R2Q13319 367 aa5.11□□□□□ -1.59
CSMD3-210ENST00000534172 NCAPHQ15003 741 aa5.11□□□□□ -1.59
CSMD3-210ENST00000534172 CCDC81Q6ZN84 652 aa5.11□□□□□ -1.59
CSMD3-210ENST00000534172 PIWIL2Q8TC59 973 aaKnown RBP5.11□□□□□ -1.59
CSMD3-210ENST00000534172 GATA6Q92908 595 aa5.11□□□□□ -1.59
CSMD3-210ENST00000534172 MFSD14AQ96MC6 490 aa5.11□□□□□ -1.59
CSMD3-210ENST00000534172 LGR6Q9HBX8 967 aa5.11□□□□□ -1.59
CSMD3-210ENST00000534172 PRR13Q9NZ81 148 aa5.11□□□□□ -1.59
CSMD3-210ENST00000534172 WDR64B1ANS9 1081 aa5.1□□□□□ -1.59
CSMD3-210ENST00000534172 SLITRK5O94991 958 aa5.1□□□□□ -1.59
CSMD3-210ENST00000534172 DNAJB8Q8NHS0 232 aa5.1□□□□□ -1.59
CSMD3-210ENST00000534172 SHKBP1Q8TBC3 707 aa5.1□□□□□ -1.59
CSMD3-210ENST00000534172 SIRPGQ9P1W8 387 aa5.1□□□□□ -1.59
CSMD3-210ENST00000534172 EOMESO95936 686 aa5.09□□□□□ -1.59
CSMD3-210ENST00000534172 ZNF143P52747 638 aaPredicted RBP5.09□□□□□ -1.59
CSMD3-210ENST00000534172 PMS1P54277 932 aaKnown RBP5.09□□□□□ -1.59
CSMD3-210ENST00000534172 UNC5AQ6ZN44 842 aa5.09□□□□□ -1.59
CSMD3-210ENST00000534172 UBE3DQ7Z6J8 389 aa5.09□□□□□ -1.59
CSMD3-210ENST00000534172 NOP9Q86U38 636 aaKnown RBP5.09□□□□□ -1.59
CSMD3-210ENST00000534172 TRIM55Q9BYV6 548 aa5.09□□□□□ -1.59
CSMD3-210ENST00000534172 PIM2Q9P1W9 311 aa5.09□□□□□ -1.59
CSMD3-210ENST00000534172 SNX11Q9Y5W9 270 aa5.09□□□□□ -1.59
CSMD3-210ENST00000534172 DYNC1LI2O43237 492 aaPredicted RBP5.09□□□□□ -1.59
CSMD3-210ENST00000534172 F13BP05160 661 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms