RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 ERVK-24P63145 666 aa17.81■□□□□ 0.44
VPS28-215ENST00000531924 CCNA1P78396 465 aa17.81■□□□□ 0.44
VPS28-215ENST00000531924 UBE2Q1Q7Z7E8 422 aa17.81■□□□□ 0.44
VPS28-215ENST00000531924 AMOTL1Q8IY63 956 aa17.81■□□□□ 0.44
VPS28-215ENST00000531924 TRMT44Q8IYL2 757 aaKnown RBP17.81■□□□□ 0.44
VPS28-215ENST00000531924 DDRGK1Q96HY6 314 aa17.81■□□□□ 0.44
VPS28-215ENST00000531924 KIAA1683Q9H0B3 1180 aa17.81■□□□□ 0.44
VPS28-215ENST00000531924 BOLA2Q9H3K6 86 aa17.81■□□□□ 0.44
VPS28-215ENST00000531924 TXNRD2Q9NNW7 524 aa17.81■□□□□ 0.44
VPS28-215ENST00000531924 PAG1Q9NWQ8 432 aa17.81■□□□□ 0.44
VPS28-215ENST00000531924 SIPA1L1O43166 1804 aa17.8■□□□□ 0.44
VPS28-215ENST00000531924 PEX10O60683 326 aa17.8■□□□□ 0.44
VPS28-215ENST00000531924 SHMT1P34896 483 aa17.8■□□□□ 0.44
VPS28-215ENST00000531924 WDR78Q5VTH9 848 aa17.8■□□□□ 0.44
VPS28-215ENST00000531924 CHRDL2Q6WN34 429 aa17.8■□□□□ 0.44
VPS28-215ENST00000531924 NECAB2Q7Z6G3 386 aa17.8■□□□□ 0.44
VPS28-215ENST00000531924 PLEKHH3Q7Z736 793 aa17.8■□□□□ 0.44
VPS28-215ENST00000531924 C12orf42Q96LP6 360 aa17.8■□□□□ 0.44
VPS28-215ENST00000531924 RABGAP1Q9Y3P9 1069 aa17.8■□□□□ 0.44
VPS28-215ENST00000531924 XRCC5P13010 732 aaKnown RBP17.79■□□□□ 0.44
VPS28-215ENST00000531924 ZKSCAN1P17029 563 aaPredicted RBP17.79■□□□□ 0.44
VPS28-215ENST00000531924 ATP5JP18859 108 aa17.79■□□□□ 0.44
VPS28-215ENST00000531924 RGS2P41220 211 aa17.79■□□□□ 0.44
VPS28-215ENST00000531924 LCORLQ8N3X6 602 aa17.79■□□□□ 0.44
VPS28-215ENST00000531924 ACER1Q8TDN7 264 aa17.79■□□□□ 0.44
VPS28-215ENST00000531924 SDR42E1Q8WUS8 393 aa17.79■□□□□ 0.44
VPS28-215ENST00000531924 EDC3Q96F86 508 aaKnown RBP17.79■□□□□ 0.44
VPS28-215ENST00000531924 PAWRQ96IZ0 340 aaKnown RBP17.79■□□□□ 0.44
VPS28-215ENST00000531924 LRRCC1Q9C099 1032 aa17.79■□□□□ 0.44
VPS28-215ENST00000531924 CRISPLD2Q9H0B8 497 aa17.79■□□□□ 0.44
VPS28-215ENST00000531924 ARMT1Q9H993 441 aa17.79■□□□□ 0.44
VPS28-215ENST00000531924 MYO5AQ9Y4I1 1855 aaKnown RBP17.79■□□□□ 0.44
VPS28-215ENST00000531924 FOCADQ5VW36 1801 aa17.79■□□□□ 0.44
VPS28-215ENST00000531924 TCRBV5S4A2TA0A5A2 114 aa17.78■□□□□ 0.44
VPS28-215ENST00000531924 MBD4O95243 580 aa17.78■□□□□ 0.44
VPS28-215ENST00000531924 PRKAR2AP13861 404 aaKnown RBP17.78■□□□□ 0.44
VPS28-215ENST00000531924 VCAM1P19320 739 aa17.78■□□□□ 0.44
VPS28-215ENST00000531924 SEPT2Q15019 361 aa17.78■□□□□ 0.44
VPS28-215ENST00000531924 Q3C1V9 767 aa17.78■□□□□ 0.44
VPS28-215ENST00000531924 GPR142Q7Z601 462 aa17.78■□□□□ 0.44
VPS28-215ENST00000531924 TRIB2Q92519 343 aa17.78■□□□□ 0.44
VPS28-215ENST00000531924 PORCNQ9H237 461 aa17.78■□□□□ 0.44
VPS28-215ENST00000531924 DCP1AQ9NPI6 582 aaPredicted RBP17.78■□□□□ 0.44
VPS28-215ENST00000531924 SWAP70Q9UH65 585 aa17.78■□□□□ 0.44
VPS28-215ENST00000531924 CDK5RAP2Q96SN8 1893 aa17.78■□□□□ 0.44
VPS28-215ENST00000531924 TRIM32Q13049 653 aa17.77■□□□□ 0.44
VPS28-215ENST00000531924 ZSCAN25Q6NSZ9 544 aa17.77■□□□□ 0.44
VPS28-215ENST00000531924 CATSPERGQ6ZRH7 1159 aa17.77■□□□□ 0.44
VPS28-215ENST00000531924 ANKLE1Q8NAG6 615 aa17.77■□□□□ 0.44
VPS28-215ENST00000531924 HAUS7Q99871 368 aa17.77■□□□□ 0.44
VPS28-215ENST00000531924 RPAP3Q9H6T3 665 aaPredicted RBP17.77■□□□□ 0.44
VPS28-215ENST00000531924 ATP8A2Q9NTI2 1148 aa17.77■□□□□ 0.44
VPS28-215ENST00000531924 IVNS1ABPQ9Y6Y0 642 aa17.77■□□□□ 0.44
VPS28-215ENST00000531924 MYH1P12882 1939 aa17.76■□□□□ 0.43
VPS28-215ENST00000531924 ADD2P35612 726 aa17.76■□□□□ 0.43
VPS28-215ENST00000531924 GABPAQ06546 454 aa17.76■□□□□ 0.43
VPS28-215ENST00000531924 TMEM179Q6ZVK1 233 aa17.76■□□□□ 0.43
VPS28-215ENST00000531924 TANGO6Q9C0B7 1094 aa17.76■□□□□ 0.43
VPS28-215ENST00000531924 NBPF3Q9H094 633 aa17.76■□□□□ 0.43
VPS28-215ENST00000531924 CYP2D6P10635 497 aa17.75■□□□□ 0.43
VPS28-215ENST00000531924 FXR1P51114 621 aaKnown RBP eCLIP17.75■□□□□ 0.43
VPS28-215ENST00000531924 GPATCH3Q96I76 525 aa17.75■□□□□ 0.43
VPS28-215ENST00000531924 APBA2Q99767 749 aa17.75■□□□□ 0.43
VPS28-215ENST00000531924 SH2D4AQ9H788 454 aa17.75■□□□□ 0.43
VPS28-215ENST00000531924 HOXC10Q9NYD6 342 aa17.75■□□□□ 0.43
VPS28-215ENST00000531924 CEP290O15078 2479 aa17.75■□□□□ 0.43
VPS28-215ENST00000531924 PRKAB2O43741 272 aa17.74■□□□□ 0.43
VPS28-215ENST00000531924 GUCY1A2P33402 732 aa17.74■□□□□ 0.43
VPS28-215ENST00000531924 MAP2K5Q13163 448 aa17.74■□□□□ 0.43
VPS28-215ENST00000531924 MORN1Q5T089 497 aa17.74■□□□□ 0.43
VPS28-215ENST00000531924 C20orf194Q5TEA3 1177 aa17.74■□□□□ 0.43
VPS28-215ENST00000531924 MFSD14CQ5VZR4 134 aa17.74■□□□□ 0.43
VPS28-215ENST00000531924 SLC44A5Q8NCS7 719 aa17.74■□□□□ 0.43
VPS28-215ENST00000531924 DIS3LQ8TF46 1054 aaKnown RBP17.74■□□□□ 0.43
VPS28-215ENST00000531924 DYNLL2Q96FJ2 89 aa17.74■□□□□ 0.43
VPS28-215ENST00000531924 ARHGEF10LQ9HCE6 1279 aa17.74■□□□□ 0.43
VPS28-215ENST00000531924 SMARCA5O60264 1052 aaPredicted RBP17.73■□□□□ 0.43
VPS28-215ENST00000531924 COG2Q14746 738 aa17.73■□□□□ 0.43
VPS28-215ENST00000531924 UBE3CQ15386 1083 aa17.73■□□□□ 0.43
VPS28-215ENST00000531924 SLFNL1Q499Z3 407 aa17.73■□□□□ 0.43
VPS28-215ENST00000531924 MAP3K21Q5TCX8 1036 aa17.73■□□□□ 0.43
VPS28-215ENST00000531924 C11orf49Q9H6J7 331 aa17.73■□□□□ 0.43
VPS28-215ENST00000531924 ECHDC1Q9NTX5 307 aa17.73■□□□□ 0.43
VPS28-215ENST00000531924 RBM27Q9P2N5 1060 aaKnown RBP17.73■□□□□ 0.43
VPS28-215ENST00000531924 SLC4A4Q9Y6R1 1079 aa17.73■□□□□ 0.43
VPS28-215ENST00000531924 SLC15A5A6NIM6 579 aa17.72■□□□□ 0.43
VPS28-215ENST00000531924 SPDYE16A6NNV3 312 aaPredicted RBP17.72■□□□□ 0.43
VPS28-215ENST00000531924 CNMDO75829 334 aa17.72■□□□□ 0.43
VPS28-215ENST00000531924 PTPREP23469 700 aa17.72■□□□□ 0.43
VPS28-215ENST00000531924 ATP2B2Q01814 1243 aa17.72■□□□□ 0.43
VPS28-215ENST00000531924 EVX2Q03828 476 aa17.72■□□□□ 0.43
VPS28-215ENST00000531924 ICA1Q05084 483 aa17.72■□□□□ 0.43
VPS28-215ENST00000531924 CACNB2Q08289 660 aaPredicted RBP17.72■□□□□ 0.43
VPS28-215ENST00000531924 CCL14Q16627 93 aa17.72■□□□□ 0.43
VPS28-215ENST00000531924 POTEEQ6S8J3 1075 aa17.72■□□□□ 0.43
VPS28-215ENST00000531924 LBX2Q6XYB7 198 aa17.72■□□□□ 0.43
VPS28-215ENST00000531924 USP6NLQ92738 828 aa17.72■□□□□ 0.43
VPS28-215ENST00000531924 CCDC17Q96LX7 622 aa17.72■□□□□ 0.43
VPS28-215ENST00000531924 OGDHLQ9ULD0 1010 aa17.72■□□□□ 0.43
VPS28-215ENST00000531924 DOCK3Q8IZD9 2030 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms