RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 USP14P54578 494 aa13.78□□□□□ -0.2
VPS28-214ENST00000531032 GABPAQ06546 454 aa13.78□□□□□ -0.2
VPS28-214ENST00000531032 PDE3AQ14432 1141 aa13.78□□□□□ -0.2
VPS28-214ENST00000531032 RAB3GAP1Q15042 981 aa13.78□□□□□ -0.2
VPS28-214ENST00000531032 ABCB5Q2M3G0 1257 aa13.78□□□□□ -0.2
VPS28-214ENST00000531032 MORN1Q5T089 497 aa13.78□□□□□ -0.2
VPS28-214ENST00000531032 SLC9C2Q5TAH2 1124 aa13.78□□□□□ -0.2
VPS28-214ENST00000531032 GPR142Q7Z601 462 aa13.78□□□□□ -0.2
VPS28-214ENST00000531032 SIRT2Q8IXJ6 389 aa13.78□□□□□ -0.2
VPS28-214ENST00000531032 TRMT44Q8IYL2 757 aaKnown RBP13.78□□□□□ -0.2
VPS28-214ENST00000531032 PAGR1Q9BTK6 254 aa13.78□□□□□ -0.2
VPS28-214ENST00000531032 OGDHLQ9ULD0 1010 aa13.78□□□□□ -0.2
VPS28-214ENST00000531032 TCRBV5S4A2TA0A5A2 114 aa13.77□□□□□ -0.21
VPS28-214ENST00000531032 USP17L15C9J2P7 530 aa13.77□□□□□ -0.21
VPS28-214ENST00000531032 USP17L13C9JLJ4 530 aa13.77□□□□□ -0.21
VPS28-214ENST00000531032 USP17L11C9JVI0 530 aa13.77□□□□□ -0.21
VPS28-214ENST00000531032 USP17L18D6R9N7 530 aa13.77□□□□□ -0.21
VPS28-214ENST00000531032 USP17L22D6RA61 530 aa13.77□□□□□ -0.21
VPS28-214ENST00000531032 USP17L17D6RBQ6 530 aa13.77□□□□□ -0.21
VPS28-214ENST00000531032 USP17L19D6RCP7 530 aa13.77□□□□□ -0.21
VPS28-214ENST00000531032 USP17L20D6RJB6 530 aa13.77□□□□□ -0.21
VPS28-214ENST00000531032 HMMRO75330 724 aa13.77□□□□□ -0.21
VPS28-214ENST00000531032 CNMDO75829 334 aa13.77□□□□□ -0.21
VPS28-214ENST00000531032 PRKAR2AP13861 404 aaKnown RBP13.77□□□□□ -0.21
VPS28-214ENST00000531032 ZKSCAN1P17029 563 aaPredicted RBP13.77□□□□□ -0.21
VPS28-214ENST00000531032 VCAM1P19320 739 aa13.77□□□□□ -0.21
VPS28-214ENST00000531032 GUCY1A2P33402 732 aa13.77□□□□□ -0.21
VPS28-214ENST00000531032 RGS2P41220 211 aa13.77□□□□□ -0.21
VPS28-214ENST00000531032 USP17L24Q0WX57 530 aa13.77□□□□□ -0.21
VPS28-214ENST00000531032 ZYXQ15942 572 aaKnown RBP13.77□□□□□ -0.21
VPS28-214ENST00000531032 LBX2Q6XYB7 198 aa13.77□□□□□ -0.21
VPS28-214ENST00000531032 CATSPERGQ6ZRH7 1159 aa13.77□□□□□ -0.21
VPS28-214ENST00000531032 PLEKHH3Q7Z736 793 aa13.77□□□□□ -0.21
VPS28-214ENST00000531032 ACER1Q8TDN7 264 aa13.77□□□□□ -0.21
VPS28-214ENST00000531032 APBA2Q99767 749 aa13.77□□□□□ -0.21
VPS28-214ENST00000531032 CRNKL1Q9BZJ0 848 aaKnown RBP13.77□□□□□ -0.21
VPS28-214ENST00000531032 CABP5Q9NP86 173 aa13.77□□□□□ -0.21
VPS28-214ENST00000531032 ZBTB40Q9NUA8 1239 aa13.77□□□□□ -0.21
VPS28-214ENST00000531032 DDX19BQ9UMR2 479 aa13.77□□□□□ -0.21
VPS28-214ENST00000531032 RABGAP1Q9Y3P9 1069 aa13.77□□□□□ -0.21
VPS28-214ENST00000531032 ZNF532Q9HCE3 1301 aa13.76□□□□□ -0.21
VPS28-214ENST00000531032 A0A1W2PPC1 479 aa13.76□□□□□ -0.21
VPS28-214ENST00000531032 GOLIM4O00461 696 aa13.76□□□□□ -0.21
VPS28-214ENST00000531032 IFIT2P09913 472 aaKnown RBP13.76□□□□□ -0.21
VPS28-214ENST00000531032 CCAR1Q8IX12 1150 aaKnown RBP13.76□□□□□ -0.21
VPS28-214ENST00000531032 NBPF3Q9H094 633 aa13.76□□□□□ -0.21
VPS28-214ENST00000531032 MCM9Q9NXL9 1143 aa13.76□□□□□ -0.21
VPS28-214ENST00000531032 APBB1O00213 710 aa13.75□□□□□ -0.21
VPS28-214ENST00000531032 RAB11FIP3O75154 756 aa13.75□□□□□ -0.21
VPS28-214ENST00000531032 POLR3DP05423 398 aaPredicted RBP13.75□□□□□ -0.21
VPS28-214ENST00000531032 CCNA1P78396 465 aa13.75□□□□□ -0.21
VPS28-214ENST00000531032 EVX2Q03828 476 aa13.75□□□□□ -0.21
VPS28-214ENST00000531032 CACNB2Q08289 660 aaPredicted RBP13.75□□□□□ -0.21
VPS28-214ENST00000531032 CCL14Q16627 93 aa13.75□□□□□ -0.21
VPS28-214ENST00000531032 LCORLQ8N3X6 602 aa13.75□□□□□ -0.21
VPS28-214ENST00000531032 DNAJC2Q99543 621 aaKnown RBP13.75□□□□□ -0.21
VPS28-214ENST00000531032 C11orf49Q9H6J7 331 aa13.75□□□□□ -0.21
VPS28-214ENST00000531032 DCP1AQ9NPI6 582 aaPredicted RBP13.75□□□□□ -0.21
VPS28-214ENST00000531032 COG6Q9Y2V7 657 aa13.75□□□□□ -0.21
VPS28-214ENST00000531032 LAMA3Q16787 3333 aa13.74□□□□□ -0.21
VPS28-214ENST00000531032 SPDYE16A6NNV3 312 aaPredicted RBP13.74□□□□□ -0.21
VPS28-214ENST00000531032 MAP2K5Q13163 448 aa13.74□□□□□ -0.21
VPS28-214ENST00000531032 SEPT2Q15019 361 aa13.74□□□□□ -0.21
VPS28-214ENST00000531032 SDR42E1Q8WUS8 393 aa13.74□□□□□ -0.21
VPS28-214ENST00000531032 EDC3Q96F86 508 aaKnown RBP13.74□□□□□ -0.21
VPS28-214ENST00000531032 RPAP3Q9H6T3 665 aaPredicted RBP13.74□□□□□ -0.21
VPS28-214ENST00000531032 BTBD7Q9P203 1132 aa13.74□□□□□ -0.21
VPS28-214ENST00000531032 FRMPD3Q5JV73 1810 aa13.74□□□□□ -0.21
VPS28-214ENST00000531032 A0A0G2JMZ2 1700 aa13.73□□□□□ -0.21
VPS28-214ENST00000531032 PFASO15067 1338 aa13.73□□□□□ -0.21
VPS28-214ENST00000531032 RLFQ13129 1914 aa13.73□□□□□ -0.21
VPS28-214ENST00000531032 A0A1W2PRG0 241 aa13.73□□□□□ -0.21
VPS28-214ENST00000531032 SLC15A5A6NIM6 579 aa13.73□□□□□ -0.21
VPS28-214ENST00000531032 GLRX3O76003 335 aaKnown RBP13.73□□□□□ -0.21
VPS28-214ENST00000531032 CCND3P30281 292 aaPredicted RBP13.73□□□□□ -0.21
VPS28-214ENST00000531032 LHX8Q68G74 356 aa13.73□□□□□ -0.21
VPS28-214ENST00000531032 C7orf61Q8IZ16 206 aa13.73□□□□□ -0.21
VPS28-214ENST00000531032 CHMP4BQ9H444 224 aaKnown RBP13.73□□□□□ -0.21
VPS28-214ENST00000531032 CWC22Q9HCG8 908 aaKnown RBP13.73□□□□□ -0.21
VPS28-214ENST00000531032 PAG1Q9NWQ8 432 aa13.73□□□□□ -0.21
VPS28-214ENST00000531032 STAP2Q9UGK3 403 aa13.73□□□□□ -0.21
VPS28-214ENST00000531032 ZNF236Q9UL36 1845 aa13.73□□□□□ -0.21
VPS28-214ENST00000531032 MYH8P13535 1937 aa13.72□□□□□ -0.21
VPS28-214ENST00000531032 HOXC6P09630 235 aa13.72□□□□□ -0.21
VPS28-214ENST00000531032 CYP2D6P10635 497 aa13.72□□□□□ -0.21
VPS28-214ENST00000531032 COL6A1P12109 1028 aa13.72□□□□□ -0.21
VPS28-214ENST00000531032 ATP5JP18859 108 aa13.72□□□□□ -0.21
VPS28-214ENST00000531032 PTPREP23469 700 aa13.72□□□□□ -0.21
VPS28-214ENST00000531032 ADD2P35612 726 aa13.72□□□□□ -0.21
VPS28-214ENST00000531032 GRB14Q14449 540 aa13.72□□□□□ -0.21
VPS28-214ENST00000531032 TMEM179Q6ZVK1 233 aa13.72□□□□□ -0.21
VPS28-214ENST00000531032 SLC44A5Q8NCS7 719 aa13.72□□□□□ -0.21
VPS28-214ENST00000531032 HAUS7Q99871 368 aa13.72□□□□□ -0.21
VPS28-214ENST00000531032 GDF15Q99988 308 aa13.72□□□□□ -0.21
VPS28-214ENST00000531032 BOLA2Q9H3K6 86 aa13.72□□□□□ -0.21
VPS28-214ENST00000531032 ARMT1Q9H993 441 aa13.72□□□□□ -0.21
VPS28-214ENST00000531032 FLRT1Q9NZU1 646 aa13.72□□□□□ -0.21
VPS28-214ENST00000531032 SWAP70Q9UH65 585 aa13.72□□□□□ -0.21
VPS28-214ENST00000531032 MYH7P12883 1935 aa13.72□□□□□ -0.21
VPS28-214ENST00000531032 BAZ2AQ9UIF9 1905 aaKnown RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms