RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 PTMAP06454 111 aaKnown RBP18.34■□□□□ 0.53
USH1C-204ENST00000526313 PTPREP23469 700 aa18.34■□□□□ 0.53
USH1C-204ENST00000526313 NPY5RQ15761 445 aa18.34■□□□□ 0.53
USH1C-204ENST00000526313 MAPKAPK5Q8IW41 473 aa18.34■□□□□ 0.53
USH1C-204ENST00000526313 ELOA2Q8IYF1 753 aaPredicted RBP18.34■□□□□ 0.53
USH1C-204ENST00000526313 KRI1Q8N9T8 703 aaKnown RBP18.34■□□□□ 0.53
USH1C-204ENST00000526313 VPS54Q9P1Q0 977 aa18.34■□□□□ 0.53
USH1C-204ENST00000526313 TNFRSF25Q93038 417 aa18.34■□□□□ 0.53
USH1C-204ENST00000526313 FBXO2Q9UK22 296 aaPredicted RBP18.34■□□□□ 0.53
USH1C-204ENST00000526313 RASA1P20936 1047 aa18.33■□□□□ 0.52
USH1C-204ENST00000526313 KIF5BP33176 963 aa18.33■□□□□ 0.52
USH1C-204ENST00000526313 SYKP43405 635 aa18.33■□□□□ 0.52
USH1C-204ENST00000526313 C16orf86Q6ZW13 317 aa18.33■□□□□ 0.52
USH1C-204ENST00000526313 PLA2G4DQ86XP0 818 aa18.33■□□□□ 0.52
USH1C-204ENST00000526313 TEX11Q8IYF3 940 aa18.33■□□□□ 0.52
USH1C-204ENST00000526313 ZNF579Q8NAF0 562 aaKnown RBP18.33■□□□□ 0.52
USH1C-204ENST00000526313 CLIC6Q96NY7 704 aa18.33■□□□□ 0.52
USH1C-204ENST00000526313 MKNK2Q9HBH9 465 aa18.33■□□□□ 0.52
USH1C-204ENST00000526313 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.33■□□□□ 0.52
USH1C-204ENST00000526313 FLT1P17948 1338 aa18.33■□□□□ 0.52
USH1C-204ENST00000526313 COL11A2P13942 1736 aaPredicted RBP18.32■□□□□ 0.52
USH1C-204ENST00000526313 QSER1Q2KHR3 1735 aa18.32■□□□□ 0.52
USH1C-204ENST00000526313 MMP10P09238 476 aa18.32■□□□□ 0.52
USH1C-204ENST00000526313 KRT2P35908 639 aa18.32■□□□□ 0.52
USH1C-204ENST00000526313 SARM1Q6SZW1 724 aa18.32■□□□□ 0.52
USH1C-204ENST00000526313 MPNDQ8N594 471 aa18.32■□□□□ 0.52
USH1C-204ENST00000526313 KAT14Q9H8E8 782 aa18.32■□□□□ 0.52
USH1C-204ENST00000526313 ZNF287Q9HBT7 754 aa18.32■□□□□ 0.52
USH1C-204ENST00000526313 TAOK2Q9UL54 1235 aa18.32■□□□□ 0.52
USH1C-204ENST00000526313 PCDHB6Q9Y5E3 794 aa18.32■□□□□ 0.52
USH1C-204ENST00000526313 FOCADQ5VW36 1801 aa18.32■□□□□ 0.52
USH1C-204ENST00000526313 RGPD3A6NKT7 1758 aaPredicted RBP18.32■□□□□ 0.52
USH1C-204ENST00000526313 RGPD4Q7Z3J3 1758 aa18.32■□□□□ 0.52
USH1C-204ENST00000526313 GTF2IP78347 998 aa18.32■□□□□ 0.52
USH1C-204ENST00000526313 GRM4Q14833 912 aa18.32■□□□□ 0.52
USH1C-204ENST00000526313 PFKFB3Q16875 520 aaPredicted RBP18.32■□□□□ 0.52
USH1C-204ENST00000526313 ZNF444Q8N0Y2 327 aaPredicted RBP18.32■□□□□ 0.52
USH1C-204ENST00000526313 MASTLQ96GX5 879 aa18.32■□□□□ 0.52
USH1C-204ENST00000526313 BPIFA3Q9BQP9 254 aa18.32■□□□□ 0.52
USH1C-204ENST00000526313 CABP5Q9NP86 173 aa18.32■□□□□ 0.52
USH1C-204ENST00000526313 TUBE1Q9UJT0 475 aa18.32■□□□□ 0.52
USH1C-204ENST00000526313 PARP3Q9Y6F1 533 aa18.32■□□□□ 0.52
USH1C-204ENST00000526313 SLC4A8Q2Y0W8 1093 aa18.31■□□□□ 0.52
USH1C-204ENST00000526313 DHX40Q8IX18 779 aaKnown RBP18.31■□□□□ 0.52
USH1C-204ENST00000526313 PNMA1Q8ND90 353 aa18.31■□□□□ 0.52
USH1C-204ENST00000526313 CEP131Q9UPN4 1083 aa18.31■□□□□ 0.52
USH1C-204ENST00000526313 SRPRBQ9Y5M8 271 aaKnown RBP18.31■□□□□ 0.52
USH1C-204ENST00000526313 TNS1Q9HBL0 1735 aaKnown RBP18.31■□□□□ 0.52
USH1C-204ENST00000526313 hCG_1642624A0A1W2PR95 340 aa18.31■□□□□ 0.52
USH1C-204ENST00000526313 SCG2P13521 617 aa18.31■□□□□ 0.52
USH1C-204ENST00000526313 NOVP48745 357 aa18.31■□□□□ 0.52
USH1C-204ENST00000526313 CDK8P49336 464 aa18.31■□□□□ 0.52
USH1C-204ENST00000526313 ZNF75DP51815 510 aa18.31■□□□□ 0.52
USH1C-204ENST00000526313 PLCB2Q00722 1185 aa18.31■□□□□ 0.52
USH1C-204ENST00000526313 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.31■□□□□ 0.52
USH1C-204ENST00000526313 SLC44A5Q8NCS7 719 aa18.31■□□□□ 0.52
USH1C-204ENST00000526313 ERCC4Q92889 916 aaPredicted RBP18.31■□□□□ 0.52
USH1C-204ENST00000526313 ZC3H12CQ9C0D7 883 aaKnown RBP18.31■□□□□ 0.52
USH1C-204ENST00000526313 SAP30BPQ9UHR5 308 aaKnown RBP18.31■□□□□ 0.52
USH1C-204ENST00000526313 DAGLAQ9Y4D2 1042 aa18.31■□□□□ 0.52
USH1C-204ENST00000526313 SNED1Q8TER0 1413 aa18.3■□□□□ 0.52
USH1C-204ENST00000526313 USP17L3A6NCW0 530 aa18.3■□□□□ 0.52
USH1C-204ENST00000526313 USP17L4A6NCW7 530 aa18.3■□□□□ 0.52
USH1C-204ENST00000526313 TPM3P06753 285 aa18.3■□□□□ 0.52
USH1C-204ENST00000526313 TSPY3P0CV98 308 aa18.3■□□□□ 0.52
USH1C-204ENST00000526313 TSPY8P0CW00 308 aa18.3■□□□□ 0.52
USH1C-204ENST00000526313 EARS2Q5JPH6 523 aaKnown RBP18.3■□□□□ 0.52
USH1C-204ENST00000526313 USP17L1Q7RTZ2 530 aa18.3■□□□□ 0.52
USH1C-204ENST00000526313 CEP57L1Q8IYX8 460 aa18.3■□□□□ 0.52
USH1C-204ENST00000526313 NEDD1Q8NHV4 660 aa18.3■□□□□ 0.52
USH1C-204ENST00000526313 NAT10Q9H0A0 1025 aaKnown RBP18.3■□□□□ 0.52
USH1C-204ENST00000526313 KCNH3Q9ULD8 1083 aa18.3■□□□□ 0.52
USH1C-204ENST00000526313 MYH1P12882 1939 aa18.3■□□□□ 0.52
USH1C-204ENST00000526313 RIMBP2O15034 1052 aa18.29■□□□□ 0.52
USH1C-204ENST00000526313 GNAQP50148 359 aa18.29■□□□□ 0.52
USH1C-204ENST00000526313 NLRP12P59046 1061 aa18.29■□□□□ 0.52
USH1C-204ENST00000526313 CERS5Q8N5B7 392 aa18.29■□□□□ 0.52
USH1C-204ENST00000526313 MAD2L2Q9UI95 211 aa18.29■□□□□ 0.52
USH1C-204ENST00000526313 A0A087WWV3 80 aa18.29■□□□□ 0.52
USH1C-204ENST00000526313 RXRBP28702 533 aa18.29■□□□□ 0.52
USH1C-204ENST00000526313 OLFM4Q6UX06 510 aa18.29■□□□□ 0.52
USH1C-204ENST00000526313 DPP8Q6V1X1 898 aaPredicted RBP18.29■□□□□ 0.52
USH1C-204ENST00000526313 BRMS1Q9HCU9 246 aa18.29■□□□□ 0.52
USH1C-204ENST00000526313 SH3GLB2Q9NR46 395 aa18.29■□□□□ 0.52
USH1C-204ENST00000526313 FAM205CA6NFA0 338 aa18.28■□□□□ 0.52
USH1C-204ENST00000526313 TRIM75PA6NK02 468 aa18.28■□□□□ 0.52
USH1C-204ENST00000526313 GOLGA6L19H0YKK7 550 aa18.28■□□□□ 0.52
USH1C-204ENST00000526313 CDC25BP30305 580 aa18.28■□□□□ 0.52
USH1C-204ENST00000526313 KRBA2Q6ZNG9 492 aa18.28■□□□□ 0.52
USH1C-204ENST00000526313 TMEM47Q9BQJ4 181 aa18.28■□□□□ 0.52
USH1C-204ENST00000526313 PALM3A6NDB9 673 aaPredicted RBP18.28■□□□□ 0.52
USH1C-204ENST00000526313 OFD1O75665 1012 aa18.28■□□□□ 0.52
USH1C-204ENST00000526313 VEGFAP15692 232 aaPredicted RBP18.28■□□□□ 0.52
USH1C-204ENST00000526313 MDM2Q00987 491 aaPredicted RBP18.28■□□□□ 0.52
USH1C-204ENST00000526313 GRIN1Q05586 938 aa18.28■□□□□ 0.52
USH1C-204ENST00000526313 LONRF3Q496Y0 759 aa18.28■□□□□ 0.52
USH1C-204ENST00000526313 STAG2Q8N3U4 1231 aa18.28■□□□□ 0.52
USH1C-204ENST00000526313 BMP15O95972 392 aa18.27■□□□□ 0.52
USH1C-204ENST00000526313 SLC35G1Q2M3R5 365 aa18.27■□□□□ 0.52
USH1C-204ENST00000526313 DPCR1Q3MIW9 517 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms