RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 GINM1Q9NU53 330 aa12.21□□□□□ -0.45
VPS28-204ENST00000526054 NR2E3Q9Y5X4 410 aa12.21□□□□□ -0.45
VPS28-204ENST00000526054 C19orf81C9J6K1 198 aa12.2□□□□□ -0.46
VPS28-204ENST00000526054 USP17L10C9JJH3 530 aa12.2□□□□□ -0.46
VPS28-204ENST00000526054 PDE6AP16499 860 aa12.2□□□□□ -0.46
VPS28-204ENST00000526054 CAPN2P17655 700 aa12.2□□□□□ -0.46
VPS28-204ENST00000526054 DYNLL1P63167 89 aaKnown RBP12.2□□□□□ -0.46
VPS28-204ENST00000526054 JAG1P78504 1218 aa12.2□□□□□ -0.46
VPS28-204ENST00000526054 SHROOM1Q2M3G4 852 aaPredicted RBP12.2□□□□□ -0.46
VPS28-204ENST00000526054 SLC9C2Q5TAH2 1124 aa12.2□□□□□ -0.46
VPS28-204ENST00000526054 METTL16Q86W50 562 aaKnown RBP12.2□□□□□ -0.46
VPS28-204ENST00000526054 MIGA1Q8NAN2 632 aa12.2□□□□□ -0.46
VPS28-204ENST00000526054 MORF4L1Q9UBU8 362 aa12.2□□□□□ -0.46
VPS28-204ENST00000526054 GTF3C3Q9Y5Q9 886 aa12.2□□□□□ -0.46
VPS28-204ENST00000526054 EVI5O60447 810 aa12.19□□□□□ -0.46
VPS28-204ENST00000526054 HOXA7P31268 230 aaPredicted RBP12.19□□□□□ -0.46
VPS28-204ENST00000526054 USP5P45974 858 aa12.19□□□□□ -0.46
VPS28-204ENST00000526054 HERVK_113P62684 666 aa12.19□□□□□ -0.46
VPS28-204ENST00000526054 PLEKHM2Q8IWE5 1019 aa12.19□□□□□ -0.46
VPS28-204ENST00000526054 KBTBD3Q8NAB2 608 aa12.19□□□□□ -0.46
VPS28-204ENST00000526054 SOCS4Q8WXH5 440 aa12.19□□□□□ -0.46
VPS28-204ENST00000526054 FEZ1Q99689 392 aa12.19□□□□□ -0.46
VPS28-204ENST00000526054 CRISPLD2Q9H0B8 497 aa12.19□□□□□ -0.46
VPS28-204ENST00000526054 RBM27Q9P2N5 1060 aaKnown RBP12.19□□□□□ -0.46
VPS28-204ENST00000526054 ZNF532Q9HCE3 1301 aa12.18□□□□□ -0.46
VPS28-204ENST00000526054 GH2P01242 217 aa12.18□□□□□ -0.46
VPS28-204ENST00000526054 ADD2P35612 726 aa12.18□□□□□ -0.46
VPS28-204ENST00000526054 GPRC5AQ8NFJ5 357 aa12.18□□□□□ -0.46
VPS28-204ENST00000526054 TRIB2Q92519 343 aa12.18□□□□□ -0.46
VPS28-204ENST00000526054 FSD1Q9BTV5 496 aa12.18□□□□□ -0.46
VPS28-204ENST00000526054 OSBPL3Q9H4L5 887 aa12.18□□□□□ -0.46
VPS28-204ENST00000526054 TXNRD2Q9NNW7 524 aa12.18□□□□□ -0.46
VPS28-204ENST00000526054 HMX1Q9NP08 348 aaPredicted RBP12.18□□□□□ -0.46
VPS28-204ENST00000526054 SERPINB13Q9UIV8 391 aa12.18□□□□□ -0.46
VPS28-204ENST00000526054 GJD2Q9UKL4 321 aa12.18□□□□□ -0.46
VPS28-204ENST00000526054 RPTORQ8N122 1335 aa12.17□□□□□ -0.46
VPS28-204ENST00000526054 PEX10O60683 326 aa12.17□□□□□ -0.46
VPS28-204ENST00000526054 ZFYP08048 801 aaPredicted RBP12.17□□□□□ -0.46
VPS28-204ENST00000526054 MAPK4P31152 587 aa12.17□□□□□ -0.46
VPS28-204ENST00000526054 TRIM32Q13049 653 aa12.17□□□□□ -0.46
VPS28-204ENST00000526054 UBE3CQ15386 1083 aa12.17□□□□□ -0.46
VPS28-204ENST00000526054 ZYXQ15942 572 aaKnown RBP12.17□□□□□ -0.46
VPS28-204ENST00000526054 USP17L2Q6R6M4 530 aa12.17□□□□□ -0.46
VPS28-204ENST00000526054 NECAB2Q7Z6G3 386 aa12.17□□□□□ -0.46
VPS28-204ENST00000526054 CCAR1Q8IX12 1150 aaKnown RBP12.17□□□□□ -0.46
VPS28-204ENST00000526054 ANKLE1Q8NAG6 615 aa12.17□□□□□ -0.46
VPS28-204ENST00000526054 DIS3LQ8TF46 1054 aaKnown RBP12.17□□□□□ -0.46
VPS28-204ENST00000526054 GTF3C2Q8WUA4 911 aaPredicted RBP12.17□□□□□ -0.46
VPS28-204ENST00000526054 EVI5LQ96CN4 794 aa12.17□□□□□ -0.46
VPS28-204ENST00000526054 PAWRQ96IZ0 340 aaKnown RBP12.17□□□□□ -0.46
VPS28-204ENST00000526054 P2RX7Q99572 595 aaKnown RBP12.17□□□□□ -0.46
VPS28-204ENST00000526054 NUDT12Q9BQG2 462 aa12.17□□□□□ -0.46
VPS28-204ENST00000526054 PAGR1Q9BTK6 254 aa12.17□□□□□ -0.46
VPS28-204ENST00000526054 EHD4Q9H223 541 aa12.17□□□□□ -0.46
VPS28-204ENST00000526054 PPP4R2Q9NY27 417 aa12.17□□□□□ -0.46
VPS28-204ENST00000526054 MYH8P13535 1937 aa12.17□□□□□ -0.46
VPS28-204ENST00000526054 FRMPD3Q5JV73 1810 aa12.16□□□□□ -0.46
VPS28-204ENST00000526054 MAGEB6P1A0A0J9YX57 407 aa12.16□□□□□ -0.46
VPS28-204ENST00000526054 TCRBV5S4A2TA0A5A2 114 aa12.16□□□□□ -0.46
VPS28-204ENST00000526054 TRIM6-TRIM34B2RNG4 842 aa12.16□□□□□ -0.46
VPS28-204ENST00000526054 PRKAR2AP13861 404 aaKnown RBP12.16□□□□□ -0.46
VPS28-204ENST00000526054 CYP2B6P20813 491 aa12.16□□□□□ -0.46
VPS28-204ENST00000526054 PDE4AP27815 886 aa12.16□□□□□ -0.46
VPS28-204ENST00000526054 ERVK-9P63128 1117 aa12.16□□□□□ -0.46
VPS28-204ENST00000526054 ERVK-24P63145 666 aa12.16□□□□□ -0.46
VPS28-204ENST00000526054 RAB3GAP1Q15042 981 aa12.16□□□□□ -0.46
VPS28-204ENST00000526054 TATDN1Q6P1N9 297 aa12.16□□□□□ -0.46
VPS28-204ENST00000526054 TTC6Q86TZ1 520 aa12.16□□□□□ -0.46
VPS28-204ENST00000526054 CWC22Q9HCG8 908 aaKnown RBP12.16□□□□□ -0.46
VPS28-204ENST00000526054 EMILIN3Q9NT22 766 aa12.16□□□□□ -0.46
VPS28-204ENST00000526054 RNF113AO15541 343 aaKnown RBP12.15□□□□□ -0.46
VPS28-204ENST00000526054 ZKSCAN1P17029 563 aaPredicted RBP12.15□□□□□ -0.46
VPS28-204ENST00000526054 ABCB5Q2M3G0 1257 aa12.15□□□□□ -0.46
VPS28-204ENST00000526054 APPBP2Q92624 585 aa12.15□□□□□ -0.46
VPS28-204ENST00000526054 C12orf42Q96LP6 360 aa12.15□□□□□ -0.46
VPS28-204ENST00000526054 RIOK1Q9BRS2 568 aaKnown RBP12.15□□□□□ -0.46
VPS28-204ENST00000526054 CRNKL1Q9BZJ0 848 aaKnown RBP12.15□□□□□ -0.46
VPS28-204ENST00000526054 PORCNQ9H237 461 aa12.15□□□□□ -0.46
VPS28-204ENST00000526054 PRO3102Q9H379 93 aa12.15□□□□□ -0.46
VPS28-204ENST00000526054 RBPJLQ9UBG7 517 aa12.15□□□□□ -0.46
VPS28-204ENST00000526054 LAMA3Q16787 3333 aa12.14□□□□□ -0.47
VPS28-204ENST00000526054 XRCC5P13010 732 aaKnown RBP12.14□□□□□ -0.47
VPS28-204ENST00000526054 VCAM1P19320 739 aa12.14□□□□□ -0.47
VPS28-204ENST00000526054 RGS2P41220 211 aa12.14□□□□□ -0.47
VPS28-204ENST00000526054 USP14P54578 494 aa12.14□□□□□ -0.47
VPS28-204ENST00000526054 CERKLQ49MI3 558 aaPredicted RBP12.14□□□□□ -0.47
VPS28-204ENST00000526054 MAP3K21Q5TCX8 1036 aa12.14□□□□□ -0.47
VPS28-204ENST00000526054 GPR142Q7Z601 462 aa12.14□□□□□ -0.47
VPS28-204ENST00000526054 TICAM2Q86XR7 235 aa12.14□□□□□ -0.47
VPS28-204ENST00000526054 TRMT44Q8IYL2 757 aaKnown RBP12.14□□□□□ -0.47
VPS28-204ENST00000526054 C7orf61Q8IZ16 206 aa12.14□□□□□ -0.47
VPS28-204ENST00000526054 RILPL2Q969X0 211 aa12.14□□□□□ -0.47
VPS28-204ENST00000526054 APBA2Q99767 749 aa12.14□□□□□ -0.47
VPS28-204ENST00000526054 NBPF3Q9H094 633 aa12.14□□□□□ -0.47
VPS28-204ENST00000526054 CABP5Q9NP86 173 aa12.14□□□□□ -0.47
VPS28-204ENST00000526054 A0A1W2PPC1 479 aa12.13□□□□□ -0.47
VPS28-204ENST00000526054 USP17L15C9J2P7 530 aa12.13□□□□□ -0.47
VPS28-204ENST00000526054 USP17L13C9JLJ4 530 aa12.13□□□□□ -0.47
VPS28-204ENST00000526054 USP17L11C9JVI0 530 aa12.13□□□□□ -0.47
VPS28-204ENST00000526054 USP17L18D6R9N7 530 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms