RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 CNTNAP5Q8WYK1 1306 aa6.74□□□□□ -1.33
CD44-220ENST00000525688 RNGTTO60942 597 aaKnown RBP6.73□□□□□ -1.33
CD44-220ENST00000525688 POLR2BP30876 1174 aaKnown RBP6.73□□□□□ -1.33
CD44-220ENST00000525688 PREPP48147 710 aa6.73□□□□□ -1.33
CD44-220ENST00000525688 PMS1P54277 932 aaKnown RBP6.73□□□□□ -1.33
CD44-220ENST00000525688 MTERF2Q49AM1 385 aa6.73□□□□□ -1.33
CD44-220ENST00000525688 PRAMEF13Q5VWM6 474 aa6.73□□□□□ -1.33
CD44-220ENST00000525688 TMEM192Q8IY95 271 aa6.73□□□□□ -1.33
CD44-220ENST00000525688 PHACTR4Q8IZ21 702 aa6.73□□□□□ -1.33
CD44-220ENST00000525688 MFSD2AQ8NA29 543 aa6.73□□□□□ -1.33
CD44-220ENST00000525688 FAM46AQ96IP4 442 aaKnown RBP6.73□□□□□ -1.33
CD44-220ENST00000525688 NACC1Q96RE7 527 aa6.73□□□□□ -1.33
CD44-220ENST00000525688 KIF2CQ99661 725 aa6.73□□□□□ -1.33
CD44-220ENST00000525688 FOXQ1Q9C009 403 aa6.73□□□□□ -1.33
CD44-220ENST00000525688 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.73□□□□□ -1.33
CD44-220ENST00000525688 EPN3Q9H201 632 aa6.73□□□□□ -1.33
CD44-220ENST00000525688 SUCOQ9UBS9 1254 aaKnown RBP6.73□□□□□ -1.33
CD44-220ENST00000525688 ADAMTS8Q9UP79 889 aa6.73□□□□□ -1.33
CD44-220ENST00000525688 SBNO2Q9Y2G9 1366 aa6.72□□□□□ -1.33
CD44-220ENST00000525688 ALX3O95076 343 aa6.72□□□□□ -1.33
CD44-220ENST00000525688 NCLP19338 710 aaKnown RBP6.72□□□□□ -1.33
CD44-220ENST00000525688 UVSSAQ2YD98 709 aa6.72□□□□□ -1.33
CD44-220ENST00000525688 PLEKHG4Q58EX7 1191 aa6.72□□□□□ -1.33
CD44-220ENST00000525688 KIAA1211LQ6NV74 962 aa6.72□□□□□ -1.33
CD44-220ENST00000525688 ZNF662Q6ZS27 426 aa6.72□□□□□ -1.33
CD44-220ENST00000525688 ALYREFQ86V81 257 aaKnown RBP6.72□□□□□ -1.33
CD44-220ENST00000525688 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.72□□□□□ -1.33
CD44-220ENST00000525688 SH3TC2Q8TF17 1288 aa6.72□□□□□ -1.33
CD44-220ENST00000525688 PPP1R13LQ8WUF5 828 aa6.72□□□□□ -1.33
CD44-220ENST00000525688 EZH1Q92800 747 aaPredicted RBP6.72□□□□□ -1.33
CD44-220ENST00000525688 SLC6A18Q96N87 628 aa6.72□□□□□ -1.33
CD44-220ENST00000525688 ZMYM5Q9UJ78 669 aa6.72□□□□□ -1.33
CD44-220ENST00000525688 PCDHB10Q9UN67 800 aa6.72□□□□□ -1.33
CD44-220ENST00000525688 SART1O43290 800 aaKnown RBP6.71□□□□□ -1.34
CD44-220ENST00000525688 SUSD5O60279 629 aa6.71□□□□□ -1.34
CD44-220ENST00000525688 CLSTN1O94985 981 aa6.71□□□□□ -1.34
CD44-220ENST00000525688 COL8A1P27658 744 aa6.71□□□□□ -1.34
CD44-220ENST00000525688 GBP1P32455 592 aa6.71□□□□□ -1.34
CD44-220ENST00000525688 ZNF143P52747 638 aaPredicted RBP6.71□□□□□ -1.34
CD44-220ENST00000525688 CHMP4BP1P59074 171 aa6.71□□□□□ -1.34
CD44-220ENST00000525688 GNPTABQ3T906 1256 aa6.71□□□□□ -1.34
CD44-220ENST00000525688 SPATC1Q76KD6 591 aa6.71□□□□□ -1.34
CD44-220ENST00000525688 ARMCX6Q7L4S7 300 aa6.71□□□□□ -1.34
CD44-220ENST00000525688 BAHD1Q8TBE0 780 aaPredicted RBP6.71□□□□□ -1.34
CD44-220ENST00000525688 THAP3Q8WTV1 239 aaPredicted RBP6.71□□□□□ -1.34
CD44-220ENST00000525688 WFDC12Q8WWY7 111 aa6.71□□□□□ -1.34
CD44-220ENST00000525688 SMARCC1Q92922 1105 aaPredicted RBP6.71□□□□□ -1.34
CD44-220ENST00000525688 SCARF2Q96GP6 870 aaPredicted RBP6.71□□□□□ -1.34
CD44-220ENST00000525688 PSMG3-AS1Q96PY0 264 aa6.71□□□□□ -1.34
CD44-220ENST00000525688 DPH2Q9BQC3 489 aaPredicted RBP6.71□□□□□ -1.34
CD44-220ENST00000525688 TMEM260Q9NX78 707 aa6.71□□□□□ -1.34
CD44-220ENST00000525688 USP21Q9UK80 565 aa6.71□□□□□ -1.34
CD44-220ENST00000525688 ANKRD62A6NC57 917 aa6.7□□□□□ -1.34
CD44-220ENST00000525688 CLEC3AO75596 197 aa6.7□□□□□ -1.34
CD44-220ENST00000525688 NOS3P29474 1203 aa6.7□□□□□ -1.34
CD44-220ENST00000525688 ADGRE1Q14246 886 aa6.7□□□□□ -1.34
CD44-220ENST00000525688 LONRF2Q1L5Z9 754 aa6.7□□□□□ -1.34
CD44-220ENST00000525688 C2orf27AQ580R0 203 aa6.7□□□□□ -1.34
CD44-220ENST00000525688 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.7□□□□□ -1.34
CD44-220ENST00000525688 PPFIBP1Q86W92 1011 aa6.7□□□□□ -1.34
CD44-220ENST00000525688 VWCEQ96DN2 955 aa6.7□□□□□ -1.34
CD44-220ENST00000525688 UBL7Q96S82 380 aaPredicted RBP6.7□□□□□ -1.34
CD44-220ENST00000525688 YIPF2Q9BWQ6 316 aa6.7□□□□□ -1.34
CD44-220ENST00000525688 SEMA6CQ9H3T2 930 aa6.7□□□□□ -1.34
CD44-220ENST00000525688 KANSL2Q9H9L4 492 aa6.7□□□□□ -1.34
CD44-220ENST00000525688 SSU72Q9NP77 194 aaKnown RBP6.7□□□□□ -1.34
CD44-220ENST00000525688 CEP131Q9UPN4 1083 aa6.7□□□□□ -1.34
CD44-220ENST00000525688 KDM2BQ8NHM5 1336 aa6.7□□□□□ -1.34
CD44-220ENST00000525688 COL17A1Q9UMD9 1497 aaPredicted RBP6.69□□□□□ -1.34
CD44-220ENST00000525688 KRBA1A5PL33 1030 aa6.69□□□□□ -1.34
CD44-220ENST00000525688 FAM86C2PA6NEL3 165 aa6.69□□□□□ -1.34
CD44-220ENST00000525688 DIAPH1O60610 1272 aaKnown RBP6.69□□□□□ -1.34
CD44-220ENST00000525688 APBA3O96018 575 aa6.69□□□□□ -1.34
CD44-220ENST00000525688 GLB1P16278 677 aa6.69□□□□□ -1.34
CD44-220ENST00000525688 USP11P51784 963 aa6.69□□□□□ -1.34
CD44-220ENST00000525688 SLC10A6Q3KNW5 377 aa6.69□□□□□ -1.34
CD44-220ENST00000525688 ANKRD39Q53RE8 183 aa6.69□□□□□ -1.34
CD44-220ENST00000525688 CDPF1Q6NVV7 123 aa6.69□□□□□ -1.34
CD44-220ENST00000525688 SEZ6L2Q6UXD5 910 aa6.69□□□□□ -1.34
CD44-220ENST00000525688 DZIP1LQ8IYY4 767 aaKnown RBP6.69□□□□□ -1.34
CD44-220ENST00000525688 DNAJB8Q8NHS0 232 aa6.69□□□□□ -1.34
CD44-220ENST00000525688 APPBP2Q92624 585 aa6.69□□□□□ -1.34
CD44-220ENST00000525688 SGSM3Q96HU1 749 aa6.69□□□□□ -1.34
CD44-220ENST00000525688 IQCA1LA6NCM1 817 aa6.68□□□□□ -1.34
CD44-220ENST00000525688 GAS2O43903 313 aaKnown RBP6.68□□□□□ -1.34
CD44-220ENST00000525688 NAT2P11245 290 aa6.68□□□□□ -1.34
CD44-220ENST00000525688 IREB2P48200 963 aaKnown RBP6.68□□□□□ -1.34
CD44-220ENST00000525688 SSRP1Q08945 709 aaKnown RBP6.68□□□□□ -1.34
CD44-220ENST00000525688 SQSTM1Q13501 440 aa6.68□□□□□ -1.34
CD44-220ENST00000525688 MAP7Q14244 749 aa6.68□□□□□ -1.34
CD44-220ENST00000525688 MBTPS1Q14703 1052 aa6.68□□□□□ -1.34
CD44-220ENST00000525688 HOMER1Q86YM7 354 aa6.68□□□□□ -1.34
CD44-220ENST00000525688 LRRC47Q8N1G4 583 aaKnown RBP6.68□□□□□ -1.34
CD44-220ENST00000525688 FANCLQ9NW38 375 aa6.68□□□□□ -1.34
CD44-220ENST00000525688 SUSD2Q9UGT4 822 aa6.68□□□□□ -1.34
CD44-220ENST00000525688 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.68□□□□□ -1.34
CD44-220ENST00000525688 ESYT3A0FGR9 886 aa6.67□□□□□ -1.34
CD44-220ENST00000525688 ANKRD34BA5PLL1 514 aa6.67□□□□□ -1.34
CD44-220ENST00000525688 C9IYK1 514 aa6.67□□□□□ -1.34
CD44-220ENST00000525688 PPM1GO15355 546 aaPredicted RBP6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms