RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 COX4I2Q96KJ9 171 aa6.26□□□□□ -1.41
CD44-219ENST00000525685 ATP13A1Q9HD20 1204 aa6.26□□□□□ -1.41
CD44-219ENST00000525685 LMCD1Q9NZU5 365 aa6.26□□□□□ -1.41
CD44-219ENST00000525685 GGT7Q9UJ14 662 aa6.26□□□□□ -1.41
CD44-219ENST00000525685 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.26□□□□□ -1.41
CD44-219ENST00000525685 H3BS24 57 aa6.25□□□□□ -1.41
CD44-219ENST00000525685 CBX7O95931 251 aa6.25□□□□□ -1.41
CD44-219ENST00000525685 GARTP22102 1010 aa6.25□□□□□ -1.41
CD44-219ENST00000525685 CYP7A1P22680 504 aa6.25□□□□□ -1.41
CD44-219ENST00000525685 KIR3DL1P43629 444 aa6.25□□□□□ -1.41
CD44-219ENST00000525685 PWP1Q13610 501 aa6.25□□□□□ -1.41
CD44-219ENST00000525685 TMEM201Q5SNT2 666 aa6.25□□□□□ -1.41
CD44-219ENST00000525685 HS2ST1Q7LGA3 356 aa6.25□□□□□ -1.41
CD44-219ENST00000525685 THAP5Q7Z6K1 395 aa6.25□□□□□ -1.41
CD44-219ENST00000525685 FLAD1Q8NFF5 587 aa6.25□□□□□ -1.41
CD44-219ENST00000525685 PRR36Q9H6K5 1346 aa6.25□□□□□ -1.41
CD44-219ENST00000525685 UPK3BL1B0FP48 263 aa6.24□□□□□ -1.41
CD44-219ENST00000525685 UPK3BL2E5RIL1 263 aa6.24□□□□□ -1.41
CD44-219ENST00000525685 ETV3P41162 512 aa6.24□□□□□ -1.41
CD44-219ENST00000525685 FAM160A1Q05DH4 1040 aa6.24□□□□□ -1.41
CD44-219ENST00000525685 TNK2Q07912 1038 aa6.24□□□□□ -1.41
CD44-219ENST00000525685 ERMP1Q7Z2K6 904 aa6.24□□□□□ -1.41
CD44-219ENST00000525685 POU5F2Q8N7G0 328 aa6.24□□□□□ -1.41
CD44-219ENST00000525685 PPP1R13LQ8WUF5 828 aa6.24□□□□□ -1.41
CD44-219ENST00000525685 CYB5D2Q8WUJ1 264 aa6.24□□□□□ -1.41
CD44-219ENST00000525685 FAM168AQ92567 244 aa6.24□□□□□ -1.41
CD44-219ENST00000525685 CARS2Q9HA77 564 aaKnown RBP6.24□□□□□ -1.41
CD44-219ENST00000525685 KBTBD4Q9NVX7 518 aa6.24□□□□□ -1.41
CD44-219ENST00000525685 POLR3KQ9Y2Y1 108 aaPredicted RBP6.24□□□□□ -1.41
CD44-219ENST00000525685 MINDY4BA8MYZ0 360 aa6.23□□□□□ -1.41
CD44-219ENST00000525685 RECKO95980 971 aa6.23□□□□□ -1.41
CD44-219ENST00000525685 TCF3P15923 654 aa6.23□□□□□ -1.41
CD44-219ENST00000525685 SNAP47Q5SQN1 464 aa6.23□□□□□ -1.41
CD44-219ENST00000525685 C9orf131Q5VYM1 1079 aa6.23□□□□□ -1.41
CD44-219ENST00000525685 GOLM1Q8NBJ4 401 aa6.23□□□□□ -1.41
CD44-219ENST00000525685 FAM13CQ8NE31 585 aa6.23□□□□□ -1.41
CD44-219ENST00000525685 PIWIL2Q8TC59 973 aaKnown RBP6.23□□□□□ -1.41
CD44-219ENST00000525685 Q96M66 194 aa6.23□□□□□ -1.41
CD44-219ENST00000525685 COPRSQ9NQ92 184 aa6.23□□□□□ -1.41
CD44-219ENST00000525685 CEP131Q9UPN4 1083 aa6.23□□□□□ -1.41
CD44-219ENST00000525685 CTNND2Q9UQB3 1225 aa6.23□□□□□ -1.41
CD44-219ENST00000525685 MPP2Q14168 576 aa6.22□□□□□ -1.41
CD44-219ENST00000525685 SLFN12Q8IYM2 578 aa6.22□□□□□ -1.41
CD44-219ENST00000525685 FBXO27Q8NI29 283 aa6.22□□□□□ -1.41
CD44-219ENST00000525685 UBE2FQ969M7 185 aa6.22□□□□□ -1.41
CD44-219ENST00000525685 KCNQ5Q9NR82 932 aa6.22□□□□□ -1.41
CD44-219ENST00000525685 METTL5Q9NRN9 209 aaKnown RBP6.22□□□□□ -1.41
CD44-219ENST00000525685 REV1Q9UBZ9 1251 aa6.22□□□□□ -1.41
CD44-219ENST00000525685 HTR3BO95264 441 aa6.21□□□□□ -1.42
CD44-219ENST00000525685 YBX3P16989 372 aaKnown RBP eCLIP6.21□□□□□ -1.42
CD44-219ENST00000525685 YARSP54577 528 aaKnown RBP6.21□□□□□ -1.42
CD44-219ENST00000525685 FAM196AQ6ZSG2 479 aa6.21□□□□□ -1.42
CD44-219ENST00000525685 REC114Q7Z4M0 266 aa6.21□□□□□ -1.42
CD44-219ENST00000525685 TMEM40Q8WWA1 233 aa6.21□□□□□ -1.42
CD44-219ENST00000525685 C19orf73Q9NVV2 129 aa6.21□□□□□ -1.42
CD44-219ENST00000525685 ZSWIM5Q9P217 1185 aa6.21□□□□□ -1.42
CD44-219ENST00000525685 CHURC1-FNTBB4DL54 471 aa6.2□□□□□ -1.42
CD44-219ENST00000525685 GRIN3BO60391 1043 aa6.2□□□□□ -1.42
CD44-219ENST00000525685 DNAJA2O60884 412 aa6.2□□□□□ -1.42
CD44-219ENST00000525685 FBXL19Q6PCT2 694 aa6.2□□□□□ -1.42
CD44-219ENST00000525685 USP48Q86UV5 1035 aa6.2□□□□□ -1.42
CD44-219ENST00000525685 ZSWIM9Q86XI8 627 aa6.2□□□□□ -1.42
CD44-219ENST00000525685 LRRC3Q9BY71 257 aa6.2□□□□□ -1.42
CD44-219ENST00000525685 DUSP15Q9H1R2 295 aaPredicted RBP6.2□□□□□ -1.42
CD44-219ENST00000525685 WASH4PA8MWX3 477 aa6.19□□□□□ -1.42
CD44-219ENST00000525685 GREM1O60565 184 aa6.19□□□□□ -1.42
CD44-219ENST00000525685 ESR1P03372 595 aa6.19□□□□□ -1.42
CD44-219ENST00000525685 ERCC5P28715 1186 aaPredicted RBP6.19□□□□□ -1.42
CD44-219ENST00000525685 FANCCQ00597 558 aa6.19□□□□□ -1.42
CD44-219ENST00000525685 FYB2Q5VWT5 728 aa6.19□□□□□ -1.42
CD44-219ENST00000525685 TMPRSS7Q7RTY8 843 aa6.19□□□□□ -1.42
CD44-219ENST00000525685 NT5DC4Q86YG4 428 aa6.19□□□□□ -1.42
CD44-219ENST00000525685 DTWD2Q8NBA8 298 aa6.19□□□□□ -1.42
CD44-219ENST00000525685 ALPK1Q96QP1 1244 aa6.19□□□□□ -1.42
CD44-219ENST00000525685 KLHL3Q9UH77 587 aa6.19□□□□□ -1.42
CD44-219ENST00000525685 TLR3O15455 904 aaKnown RBP6.18□□□□□ -1.42
CD44-219ENST00000525685 C8AP07357 584 aa6.18□□□□□ -1.42
CD44-219ENST00000525685 SRFP11831 508 aa6.18□□□□□ -1.42
CD44-219ENST00000525685 EIF4A3P38919 411 aaKnown RBP6.18□□□□□ -1.42
CD44-219ENST00000525685 AFMP43652 599 aa6.18□□□□□ -1.42
CD44-219ENST00000525685 HDLBPQ00341 1268 aaKnown RBP6.18□□□□□ -1.42
CD44-219ENST00000525685 GAB4Q2WGN9 574 aa6.18□□□□□ -1.42
CD44-219ENST00000525685 BAHD1Q8TBE0 780 aaPredicted RBP6.18□□□□□ -1.42
CD44-219ENST00000525685 RNF141Q8WVD5 230 aa6.18□□□□□ -1.42
CD44-219ENST00000525685 GPR62Q9BZJ7 368 aa6.18□□□□□ -1.42
CD44-219ENST00000525685 CCSER2Q9H7U1 834 aa6.18□□□□□ -1.42
CD44-219ENST00000525685 ROBO2Q9HCK4 1378 aa6.18□□□□□ -1.42
CD44-219ENST00000525685 ZNF503-AS2A6NEH8 195 aa6.17□□□□□ -1.42
CD44-219ENST00000525685 LRRN2O75325 713 aa6.17□□□□□ -1.42
CD44-219ENST00000525685 GDNFP39905 211 aa6.17□□□□□ -1.42
CD44-219ENST00000525685 KCNMB1Q16558 191 aa6.17□□□□□ -1.42
CD44-219ENST00000525685 CWF19L2Q2TBE0 894 aaKnown RBP6.17□□□□□ -1.42
CD44-219ENST00000525685 ZNF394Q53GI3 561 aa6.17□□□□□ -1.42
CD44-219ENST00000525685 ZNF648Q5T619 568 aaPredicted RBP6.17□□□□□ -1.42
CD44-219ENST00000525685 LDLRAD1Q5T700 205 aa6.17□□□□□ -1.42
CD44-219ENST00000525685 ZNF654Q8IZM8 581 aa6.17□□□□□ -1.42
CD44-219ENST00000525685 CCDC74BQ96LY2 380 aa6.17□□□□□ -1.42
CD44-219ENST00000525685 TRIT1Q9H3H1 467 aaKnown RBP6.17□□□□□ -1.42
CD44-219ENST00000525685 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.17□□□□□ -1.42
CD44-219ENST00000525685 SUPT16HQ9Y5B9 1047 aaKnown RBP6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms