RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 CEP290O15078 2479 aa6.24□□□□□ -1.41
CD44-218ENST00000525469 FAM177BA6PVY3 158 aa6.23□□□□□ -1.41
CD44-218ENST00000525469 FKTNO75072 461 aa6.23□□□□□ -1.41
CD44-218ENST00000525469 ADH6P28332 368 aa6.23□□□□□ -1.41
CD44-218ENST00000525469 TNP2Q05952 138 aa6.23□□□□□ -1.41
CD44-218ENST00000525469 DPYDQ12882 1025 aa6.23□□□□□ -1.41
CD44-218ENST00000525469 NFKBIBQ15653 356 aa6.23□□□□□ -1.41
CD44-218ENST00000525469 CDCA8Q53HL2 280 aa6.23□□□□□ -1.41
CD44-218ENST00000525469 TBCELQ5QJ74 424 aa6.23□□□□□ -1.41
CD44-218ENST00000525469 TMEM151AQ8N4L1 468 aa6.23□□□□□ -1.41
CD44-218ENST00000525469 MARK1Q9P0L2 795 aa6.23□□□□□ -1.41
CD44-218ENST00000525469 CNOT7Q9UIV1 285 aaKnown RBP6.23□□□□□ -1.41
CD44-218ENST00000525469 ZNRF3Q9ULT6 936 aa6.23□□□□□ -1.41
CD44-218ENST00000525469 CUL9Q8IWT3 2517 aa6.23□□□□□ -1.41
CD44-218ENST00000525469 CDHR2Q9BYE9 1310 aa6.23□□□□□ -1.41
CD44-218ENST00000525469 NPC1L1Q9UHC9 1359 aa6.22□□□□□ -1.41
CD44-218ENST00000525469 UBR2Q8IWV8 1755 aa6.22□□□□□ -1.41
CD44-218ENST00000525469 A0A0U1RQG5 324 aaPredicted RBP6.22□□□□□ -1.41
CD44-218ENST00000525469 KLRG2A4D1S0 409 aaPredicted RBP6.22□□□□□ -1.41
CD44-218ENST00000525469 CAMTA2O94983 1202 aa6.22□□□□□ -1.41
CD44-218ENST00000525469 CDK11BP21127 795 aaKnown RBP6.22□□□□□ -1.41
CD44-218ENST00000525469 RFX1P22670 979 aa6.22□□□□□ -1.41
CD44-218ENST00000525469 AMPD1P23109 780 aa6.22□□□□□ -1.41
CD44-218ENST00000525469 CXCL9Q07325 125 aa6.22□□□□□ -1.41
CD44-218ENST00000525469 AOC3Q16853 763 aa6.22□□□□□ -1.41
CD44-218ENST00000525469 CRTC2Q53ET0 693 aaPredicted RBP6.22□□□□□ -1.41
CD44-218ENST00000525469 CLEC4GQ6UXB4 293 aa6.22□□□□□ -1.41
CD44-218ENST00000525469 LRRC69Q6ZNQ3 347 aa6.22□□□□□ -1.41
CD44-218ENST00000525469 CCDC82Q8N4S0 544 aa6.22□□□□□ -1.41
CD44-218ENST00000525469 GALNT6Q8NCL4 622 aa6.22□□□□□ -1.41
CD44-218ENST00000525469 SUPT20HQ8NEM7 779 aa6.22□□□□□ -1.41
CD44-218ENST00000525469 FAM200AQ8TCP9 573 aa6.22□□□□□ -1.41
CD44-218ENST00000525469 SCG3Q8WXD2 468 aaKnown RBP6.22□□□□□ -1.41
CD44-218ENST00000525469 FRAT1Q92837 279 aaPredicted RBP6.22□□□□□ -1.41
CD44-218ENST00000525469 VTI1AQ96AJ9 217 aa6.22□□□□□ -1.41
CD44-218ENST00000525469 CCDC97Q96F63 343 aaPredicted RBP6.22□□□□□ -1.41
CD44-218ENST00000525469 SIN3AQ96ST3 1273 aa6.22□□□□□ -1.41
CD44-218ENST00000525469 PHACTR1Q9C0D0 580 aa6.22□□□□□ -1.41
CD44-218ENST00000525469 VPS33BQ9H267 617 aa6.22□□□□□ -1.41
CD44-218ENST00000525469 LGR6Q9HBX8 967 aa6.22□□□□□ -1.41
CD44-218ENST00000525469 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.22□□□□□ -1.41
CD44-218ENST00000525469 NIP7Q9Y221 180 aaKnown RBP eCLIP6.22□□□□□ -1.41
CD44-218ENST00000525469 MKI67P46013 3256 aaKnown RBP6.22□□□□□ -1.41
CD44-218ENST00000525469 COL4A5P29400 1685 aa6.21□□□□□ -1.42
CD44-218ENST00000525469 H0YGN5 161 aa6.21□□□□□ -1.42
CD44-218ENST00000525469 RNMTO43148 476 aaKnown RBP6.21□□□□□ -1.42
CD44-218ENST00000525469 GDF11O95390 407 aa6.21□□□□□ -1.42
CD44-218ENST00000525469 EN2P19622 333 aaPredicted RBP6.21□□□□□ -1.42
CD44-218ENST00000525469 CD33P20138 364 aa6.21□□□□□ -1.42
CD44-218ENST00000525469 IGFBP4P22692 258 aa6.21□□□□□ -1.42
CD44-218ENST00000525469 DDX10Q13206 875 aaKnown RBP6.21□□□□□ -1.42
CD44-218ENST00000525469 NOM1Q5C9Z4 860 aaKnown RBP6.21□□□□□ -1.42
CD44-218ENST00000525469 SULT6B1Q6IMI4 303 aa6.21□□□□□ -1.42
CD44-218ENST00000525469 TRPM4Q8TD43 1214 aa6.21□□□□□ -1.42
CD44-218ENST00000525469 EDARADDQ8WWZ3 215 aa6.21□□□□□ -1.42
CD44-218ENST00000525469 RBM17Q96I25 401 aaKnown RBP6.21□□□□□ -1.42
CD44-218ENST00000525469 TESK2Q96S53 571 aa6.21□□□□□ -1.42
CD44-218ENST00000525469 GTPBP4Q9BZE4 634 aaKnown RBP6.21□□□□□ -1.42
CD44-218ENST00000525469 GGA1Q9UJY5 639 aa6.21□□□□□ -1.42
CD44-218ENST00000525469 MKL2Q9ULH7 1088 aa6.21□□□□□ -1.42
CD44-218ENST00000525469 TRIM17Q9Y577 477 aa6.21□□□□□ -1.42
CD44-218ENST00000525469 EFSO43281 561 aa6.2□□□□□ -1.42
CD44-218ENST00000525469 RAD17O75943 681 aa6.2□□□□□ -1.42
CD44-218ENST00000525469 DKK1O94907 266 aa6.2□□□□□ -1.42
CD44-218ENST00000525469 LETM1O95202 739 aaPredicted RBP6.2□□□□□ -1.42
CD44-218ENST00000525469 A1BGP04217 495 aa6.2□□□□□ -1.42
CD44-218ENST00000525469 IRS1P35568 1242 aa6.2□□□□□ -1.42
CD44-218ENST00000525469 CTBSQ01459 385 aa6.2□□□□□ -1.42
CD44-218ENST00000525469 BECN1Q14457 450 aa6.2□□□□□ -1.42
CD44-218ENST00000525469 ZNF468Q5VIY5 522 aaPredicted RBP6.2□□□□□ -1.42
CD44-218ENST00000525469 DLK2Q6UY11 383 aa6.2□□□□□ -1.42
CD44-218ENST00000525469 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.2□□□□□ -1.42
CD44-218ENST00000525469 ALYREFQ86V81 257 aaKnown RBP6.2□□□□□ -1.42
CD44-218ENST00000525469 RASAL3Q86YV0 1011 aa6.2□□□□□ -1.42
CD44-218ENST00000525469 AEBP1Q8IUX7 1158 aa6.2□□□□□ -1.42
CD44-218ENST00000525469 C2orf49Q9BVC5 232 aaPredicted RBP6.2□□□□□ -1.42
CD44-218ENST00000525469 BACH2Q9BYV9 841 aa6.2□□□□□ -1.42
CD44-218ENST00000525469 NYXQ9GZU5 481 aa6.2□□□□□ -1.42
CD44-218ENST00000525469 DNMT3AQ9Y6K1 912 aaPredicted RBP6.2□□□□□ -1.42
CD44-218ENST00000525469 A0A0C4DFX4 3053 aa6.19□□□□□ -1.42
CD44-218ENST00000525469 ADM5C9JUS6 153 aa6.19□□□□□ -1.42
CD44-218ENST00000525469 MRE11P49959 708 aa6.19□□□□□ -1.42
CD44-218ENST00000525469 FKBP1BP68106 108 aa6.19□□□□□ -1.42
CD44-218ENST00000525469 TEFQ10587 303 aa6.19□□□□□ -1.42
CD44-218ENST00000525469 SREBF2Q12772 1141 aa6.19□□□□□ -1.42
CD44-218ENST00000525469 RTN1Q16799 776 aa6.19□□□□□ -1.42
CD44-218ENST00000525469 SWI5Q1ZZU3 235 aa6.19□□□□□ -1.42
CD44-218ENST00000525469 SLC4A8Q2Y0W8 1093 aa6.19□□□□□ -1.42
CD44-218ENST00000525469 TBC1D10BQ4KMP7 808 aaPredicted RBP6.19□□□□□ -1.42
CD44-218ENST00000525469 ALDH16A1Q8IZ83 802 aa6.19□□□□□ -1.42
CD44-218ENST00000525469 DPF3Q92784 378 aa6.19□□□□□ -1.42
CD44-218ENST00000525469 CEP63Q96MT8 703 aa6.19□□□□□ -1.42
CD44-218ENST00000525469 FMNL2Q96PY5 1086 aa6.19□□□□□ -1.42
CD44-218ENST00000525469 SERPINA10Q9UK55 444 aa6.19□□□□□ -1.42
CD44-218ENST00000525469 PRDM4Q9UKN5 801 aa6.19□□□□□ -1.42
CD44-218ENST00000525469 NAP1L2Q9ULW6 460 aaPredicted RBP6.19□□□□□ -1.42
CD44-218ENST00000525469 HCN4Q9Y3Q4 1203 aa6.19□□□□□ -1.42
CD44-218ENST00000525469 HEG1Q9ULI3 1381 aa6.18□□□□□ -1.42
CD44-218ENST00000525469 NUP98P52948 1817 aa6.18□□□□□ -1.42
CD44-218ENST00000525469 MRC1P22897 1456 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 133.6 ms