RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 EIF4A3P38919 411 aaKnown RBP4.14□□□□□ -1.75
CD44-216ENST00000525293 KIR3DL1P43629 444 aa4.14□□□□□ -1.75
CD44-216ENST00000525293 YARSP54577 528 aaKnown RBP4.14□□□□□ -1.75
CD44-216ENST00000525293 MPP2Q14168 576 aa4.14□□□□□ -1.75
CD44-216ENST00000525293 TMEM201Q5SNT2 666 aa4.14□□□□□ -1.75
CD44-216ENST00000525293 FBXL19Q6PCT2 694 aa4.14□□□□□ -1.75
CD44-216ENST00000525293 ERMP1Q7Z2K6 904 aa4.14□□□□□ -1.75
CD44-216ENST00000525293 ATG4DQ86TL0 474 aaPredicted RBP4.14□□□□□ -1.75
CD44-216ENST00000525293 DNAJB8Q8NHS0 232 aa4.14□□□□□ -1.75
CD44-216ENST00000525293 PPP1R13LQ8WUF5 828 aa4.14□□□□□ -1.75
CD44-216ENST00000525293 UBE2FQ969M7 185 aa4.14□□□□□ -1.75
CD44-216ENST00000525293 COX4I2Q96KJ9 171 aa4.14□□□□□ -1.75
CD44-216ENST00000525293 BCL11AQ9H165 835 aa4.14□□□□□ -1.75
CD44-216ENST00000525293 CARS2Q9HA77 564 aaKnown RBP4.14□□□□□ -1.75
CD44-216ENST00000525293 LMCD1Q9NZU5 365 aa4.14□□□□□ -1.75
CD44-216ENST00000525293 KLHL3Q9UH77 587 aa4.14□□□□□ -1.75
CD44-216ENST00000525293 GGT7Q9UJ14 662 aa4.14□□□□□ -1.75
CD44-216ENST00000525293 PRR36Q9H6K5 1346 aa4.14□□□□□ -1.75
CD44-216ENST00000525293 ARID1BQ8NFD5 2236 aaPredicted RBP4.14□□□□□ -1.75
CD44-216ENST00000525293 HTR3BO95264 441 aa4.13□□□□□ -1.75
CD44-216ENST00000525293 ZNF16P17020 682 aaPredicted RBP4.13□□□□□ -1.75
CD44-216ENST00000525293 ETV3P41162 512 aa4.13□□□□□ -1.75
CD44-216ENST00000525293 MFAP1P55081 439 aaKnown RBP4.13□□□□□ -1.75
CD44-216ENST00000525293 FAM196AQ6ZSG2 479 aa4.13□□□□□ -1.75
CD44-216ENST00000525293 HS2ST1Q7LGA3 356 aa4.13□□□□□ -1.75
CD44-216ENST00000525293 REC114Q7Z4M0 266 aa4.13□□□□□ -1.75
CD44-216ENST00000525293 TMEM87AQ8NBN3 555 aa4.13□□□□□ -1.75
CD44-216ENST00000525293 CYB5D2Q8WUJ1 264 aa4.13□□□□□ -1.75
CD44-216ENST00000525293 CARMIL2Q6F5E8 1435 aa4.12□□□□□ -1.75
CD44-216ENST00000525293 WASH4PA8MWX3 477 aa4.12□□□□□ -1.75
CD44-216ENST00000525293 GREM1O60565 184 aa4.12□□□□□ -1.75
CD44-216ENST00000525293 DNAJA2O60884 412 aa4.12□□□□□ -1.75
CD44-216ENST00000525293 TNNI2P48788 182 aa4.12□□□□□ -1.75
CD44-216ENST00000525293 HOMEZQ8IX15 550 aa4.12□□□□□ -1.75
CD44-216ENST00000525293 SLFN12Q8IYM2 578 aa4.12□□□□□ -1.75
CD44-216ENST00000525293 PHACTR4Q8IZ21 702 aa4.12□□□□□ -1.75
CD44-216ENST00000525293 BAHD1Q8TBE0 780 aaPredicted RBP4.12□□□□□ -1.75
CD44-216ENST00000525293 PIWIL2Q8TC59 973 aaKnown RBP4.12□□□□□ -1.75
CD44-216ENST00000525293 ZNF296Q8WUU4 475 aaPredicted RBP4.12□□□□□ -1.75
CD44-216ENST00000525293 FAM168AQ92567 244 aa4.12□□□□□ -1.75
CD44-216ENST00000525293 CCDC74BQ96LY2 380 aa4.12□□□□□ -1.75
CD44-216ENST00000525293 Q96M66 194 aa4.12□□□□□ -1.75
CD44-216ENST00000525293 BRMS1Q9HCU9 246 aa4.12□□□□□ -1.75
CD44-216ENST00000525293 SUPT16HQ9Y5B9 1047 aaKnown RBP4.12□□□□□ -1.75
CD44-216ENST00000525293 ROBO2Q9HCK4 1378 aa4.12□□□□□ -1.75
CD44-216ENST00000525293 LRRN2O75325 713 aa4.11□□□□□ -1.75
CD44-216ENST00000525293 CRKP46108 304 aa4.11□□□□□ -1.75
CD44-216ENST00000525293 CWF19L2Q2TBE0 894 aaKnown RBP4.11□□□□□ -1.75
CD44-216ENST00000525293 LDLRAD1Q5T700 205 aa4.11□□□□□ -1.75
CD44-216ENST00000525293 OGFOD2Q6N063 350 aa4.11□□□□□ -1.75
CD44-216ENST00000525293 THAP5Q7Z6K1 395 aa4.11□□□□□ -1.75
CD44-216ENST00000525293 KIF2CQ99661 725 aa4.11□□□□□ -1.75
CD44-216ENST00000525293 KRTAP4-9Q9BYQ8 210 aa4.11□□□□□ -1.75
CD44-216ENST00000525293 BACH2Q9BYV9 841 aa4.11□□□□□ -1.75
CD44-216ENST00000525293 DUSP15Q9H1R2 295 aaPredicted RBP4.11□□□□□ -1.75
CD44-216ENST00000525293 KCNQ5Q9NR82 932 aa4.11□□□□□ -1.75
CD44-216ENST00000525293 UBP1Q9NZI7 540 aa4.11□□□□□ -1.75
CD44-216ENST00000525293 ADAMTS1Q9UHI8 967 aa4.11□□□□□ -1.75
CD44-216ENST00000525293 CTNND2Q9UQB3 1225 aa4.11□□□□□ -1.75
CD44-216ENST00000525293 PCDHB14Q9Y5E9 798 aa4.11□□□□□ -1.75
CD44-216ENST00000525293 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.11□□□□□ -1.75
CD44-216ENST00000525293 SLC22A31A6NKX4 558 aa4.1□□□□□ -1.75
CD44-216ENST00000525293 ESR1P03372 595 aa4.1□□□□□ -1.75
CD44-216ENST00000525293 YBX3P16989 372 aaKnown RBP eCLIP4.1□□□□□ -1.75
CD44-216ENST00000525293 TPP2P29144 1249 aaPredicted RBP4.1□□□□□ -1.75
CD44-216ENST00000525293 GBP1P32455 592 aa4.1□□□□□ -1.75
CD44-216ENST00000525293 MLECQ14165 292 aa4.1□□□□□ -1.75
CD44-216ENST00000525293 SEZ6Q53EL9 994 aa4.1□□□□□ -1.75
CD44-216ENST00000525293 ARSHQ5FYA8 562 aa4.1□□□□□ -1.75
CD44-216ENST00000525293 FYB2Q5VWT5 728 aa4.1□□□□□ -1.75
CD44-216ENST00000525293 CREG2Q8IUH2 290 aa4.1□□□□□ -1.75
CD44-216ENST00000525293 FLAD1Q8NFF5 587 aa4.1□□□□□ -1.75
CD44-216ENST00000525293 RNF141Q8WVD5 230 aa4.1□□□□□ -1.75
CD44-216ENST00000525293 KREMEN1Q96MU8 473 aa4.1□□□□□ -1.75
CD44-216ENST00000525293 LRRC3Q9BY71 257 aa4.1□□□□□ -1.75
CD44-216ENST00000525293 TRIT1Q9H3H1 467 aaKnown RBP4.1□□□□□ -1.75
CD44-216ENST00000525293 GPATCH2Q9NW75 528 aa4.1□□□□□ -1.75
CD44-216ENST00000525293 KCNH3Q9ULD8 1083 aa4.1□□□□□ -1.75
CD44-216ENST00000525293 ATE1O95260 518 aa4.09□□□□□ -1.75
CD44-216ENST00000525293 SRFP11831 508 aa4.09□□□□□ -1.75
CD44-216ENST00000525293 MCM4P33991 863 aa4.09□□□□□ -1.75
CD44-216ENST00000525293 GDNFP39905 211 aa4.09□□□□□ -1.75
CD44-216ENST00000525293 AFMP43652 599 aa4.09□□□□□ -1.75
CD44-216ENST00000525293 CHMP4BP1P59074 171 aa4.09□□□□□ -1.75
CD44-216ENST00000525293 CLCQ05315 142 aa4.09□□□□□ -1.75
CD44-216ENST00000525293 APOBRQ0VD83 1088 aa4.09□□□□□ -1.75
CD44-216ENST00000525293 GK5Q6ZS86 529 aa4.09□□□□□ -1.75
CD44-216ENST00000525293 TMPRSS7Q7RTY8 843 aa4.09□□□□□ -1.75
CD44-216ENST00000525293 ZSWIM9Q86XI8 627 aa4.09□□□□□ -1.75
CD44-216ENST00000525293 DTWD2Q8NBA8 298 aa4.09□□□□□ -1.75
CD44-216ENST00000525293 TMEM40Q8WWA1 233 aa4.09□□□□□ -1.75
CD44-216ENST00000525293 ALPK1Q96QP1 1244 aa4.09□□□□□ -1.75
CD44-216ENST00000525293 GPR62Q9BZJ7 368 aa4.09□□□□□ -1.75
CD44-216ENST00000525293 C19orf73Q9NVV2 129 aa4.09□□□□□ -1.75
CD44-216ENST00000525293 SLAMF8Q9P0V8 285 aa4.09□□□□□ -1.75
CD44-216ENST00000525293 DNAJC25-GNG10A0A024R161 153 aa4.08□□□□□ -1.76
CD44-216ENST00000525293 RGS13O14921 159 aa4.08□□□□□ -1.76
CD44-216ENST00000525293 RAG1P15918 1043 aa4.08□□□□□ -1.76
CD44-216ENST00000525293 ZNF76P36508 570 aa4.08□□□□□ -1.76
CD44-216ENST00000525293 KCNMB1Q16558 191 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms