RNA–Protein interactions for RNA: ENST00000523261.1

NKX3-1-202, Transcript of NK3 homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NKX3-1, Length 713 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-202ENST00000523261 XIRP2A4UGR9 3374 aa17.28■□□□□ 0.36
NKX3-1-202ENST00000523261 SEPT4O43236 478 aa17.27■□□□□ 0.36
NKX3-1-202ENST00000523261 MYCNP04198 464 aaPredicted RBP17.27■□□□□ 0.36
NKX3-1-202ENST00000523261 SHROOM1Q2M3G4 852 aaPredicted RBP17.27■□□□□ 0.36
NKX3-1-202ENST00000523261 EMILIN3Q9NT22 766 aa17.27■□□□□ 0.36
NKX3-1-202ENST00000523261 IVNS1ABPQ9Y6Y0 642 aa17.27■□□□□ 0.36
NKX3-1-202ENST00000523261 PDS5AQ29RF7 1337 aaKnown RBP17.26■□□□□ 0.35
NKX3-1-202ENST00000523261 MAP4K4O95819 1239 aaPredicted RBP17.26■□□□□ 0.35
NKX3-1-202ENST00000523261 MECOMQ03112 1051 aa17.26■□□□□ 0.35
NKX3-1-202ENST00000523261 RASGRF1Q13972 1273 aa17.26■□□□□ 0.35
NKX3-1-202ENST00000523261 SPTY2D1Q68D10 685 aaPredicted RBP17.26■□□□□ 0.35
NKX3-1-202ENST00000523261 ALYREFQ86V81 257 aaKnown RBP17.26■□□□□ 0.35
NKX3-1-202ENST00000523261 REV3LO60673 3130 aa17.26■□□□□ 0.35
NKX3-1-202ENST00000523261 GRXCR1A8MXD5 290 aa17.25■□□□□ 0.35
NKX3-1-202ENST00000523261 IGFBP4P22692 258 aa17.25■□□□□ 0.35
NKX3-1-202ENST00000523261 TMEM31Q5JXX7 168 aa17.25■□□□□ 0.35
NKX3-1-202ENST00000523261 OLFML2BQ68BL8 750 aa17.25■□□□□ 0.35
NKX3-1-202ENST00000523261 CCDC102BQ68D86 513 aa17.25■□□□□ 0.35
NKX3-1-202ENST00000523261 SNX27Q96L92 541 aa17.25■□□□□ 0.35
NKX3-1-202ENST00000523261 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.25■□□□□ 0.35
NKX3-1-202ENST00000523261 DNAJC18Q9H819 358 aa17.25■□□□□ 0.35
NKX3-1-202ENST00000523261 CHD7Q9P2D1 2997 aa17.25■□□□□ 0.35
NKX3-1-202ENST00000523261 PHF24Q9UPV7 400 aa17.25■□□□□ 0.35
NKX3-1-202ENST00000523261 ZNF236Q9UL36 1845 aa17.24■□□□□ 0.35
NKX3-1-202ENST00000523261 ADORA1P30542 326 aa17.24■□□□□ 0.35
NKX3-1-202ENST00000523261 NCBP3Q53F19 620 aaKnown RBP17.24■□□□□ 0.35
NKX3-1-202ENST00000523261 FAM47AQ5JRC9 791 aa17.24■□□□□ 0.35
NKX3-1-202ENST00000523261 USP17L2Q6R6M4 530 aa17.24■□□□□ 0.35
NKX3-1-202ENST00000523261 CCDC129Q6ZRS4 1044 aa17.24■□□□□ 0.35
NKX3-1-202ENST00000523261 GINM1Q9NU53 330 aa17.24■□□□□ 0.35
NKX3-1-202ENST00000523261 BTBD7Q9P203 1132 aa17.24■□□□□ 0.35
NKX3-1-202ENST00000523261 CEP126Q9P2H0 1117 aa17.24■□□□□ 0.35
NKX3-1-202ENST00000523261 PI4KBQ9UBF8 816 aa17.24■□□□□ 0.35
NKX3-1-202ENST00000523261 PQBP1O60828 265 aaKnown RBP17.23■□□□□ 0.35
NKX3-1-202ENST00000523261 TFF2Q03403 129 aa17.23■□□□□ 0.35
NKX3-1-202ENST00000523261 DDX10Q13206 875 aaKnown RBP17.23■□□□□ 0.35
NKX3-1-202ENST00000523261 RASIP1Q5U651 963 aa17.23■□□□□ 0.35
NKX3-1-202ENST00000523261 TMEM39AQ9NV64 488 aa17.23■□□□□ 0.35
NKX3-1-202ENST00000523261 ZBTB21Q9ULJ3 1066 aa17.23■□□□□ 0.35
NKX3-1-202ENST00000523261 USP17L15C9J2P7 530 aa17.22■□□□□ 0.35
NKX3-1-202ENST00000523261 USP17L13C9JLJ4 530 aa17.22■□□□□ 0.35
NKX3-1-202ENST00000523261 USP17L11C9JVI0 530 aa17.22■□□□□ 0.35
NKX3-1-202ENST00000523261 USP17L18D6R9N7 530 aa17.22■□□□□ 0.35
NKX3-1-202ENST00000523261 USP17L22D6RA61 530 aa17.22■□□□□ 0.35
NKX3-1-202ENST00000523261 USP17L17D6RBQ6 530 aa17.22■□□□□ 0.35
NKX3-1-202ENST00000523261 USP17L19D6RCP7 530 aa17.22■□□□□ 0.35
NKX3-1-202ENST00000523261 USP17L20D6RJB6 530 aa17.22■□□□□ 0.35
NKX3-1-202ENST00000523261 GDF11O95390 407 aa17.22■□□□□ 0.35
NKX3-1-202ENST00000523261 KCNQ1P51787 676 aa17.22■□□□□ 0.35
NKX3-1-202ENST00000523261 USP17L24Q0WX57 530 aa17.22■□□□□ 0.35
NKX3-1-202ENST00000523261 PRAMEF19Q5SWL8 479 aa17.22■□□□□ 0.35
NKX3-1-202ENST00000523261 LBX2Q6XYB7 198 aa17.22■□□□□ 0.35
NKX3-1-202ENST00000523261 ERICH6Q7L0X2 663 aa17.22■□□□□ 0.35
NKX3-1-202ENST00000523261 C16orf59Q7L2K0 433 aa17.22■□□□□ 0.35
NKX3-1-202ENST00000523261 DPP9Q86TI2 863 aa17.22■□□□□ 0.35
NKX3-1-202ENST00000523261 METTL16Q86W50 562 aaKnown RBP17.22■□□□□ 0.35
NKX3-1-202ENST00000523261 C12orf42Q96LP6 360 aa17.22■□□□□ 0.35
NKX3-1-202ENST00000523261 SIL1Q9H173 461 aa17.22■□□□□ 0.35
NKX3-1-202ENST00000523261 TSPYL2Q9H2G4 693 aaPredicted RBP17.22■□□□□ 0.35
NKX3-1-202ENST00000523261 PRKRIP1Q9H875 184 aaPredicted RBP17.22■□□□□ 0.35
NKX3-1-202ENST00000523261 CIAO1O76071 339 aa17.21■□□□□ 0.35
NKX3-1-202ENST00000523261 ADORA2AP29274 412 aa17.21■□□□□ 0.35
NKX3-1-202ENST00000523261 FAAP100Q0VG06 881 aa17.21■□□□□ 0.35
NKX3-1-202ENST00000523261 TMEM240Q5SV17 173 aa17.21■□□□□ 0.35
NKX3-1-202ENST00000523261 TEX11Q8IYF3 940 aa17.21■□□□□ 0.35
NKX3-1-202ENST00000523261 SLC44A5Q8NCS7 719 aa17.21■□□□□ 0.35
NKX3-1-202ENST00000523261 USP44Q9H0E7 712 aa17.21■□□□□ 0.35
NKX3-1-202ENST00000523261 DHX36Q9H2U1 1008 aaKnown RBP17.21■□□□□ 0.35
NKX3-1-202ENST00000523261 C11orf16Q9NQ32 467 aa17.21■□□□□ 0.35
NKX3-1-202ENST00000523261 FBXO3Q9UK99 471 aa17.21■□□□□ 0.35
NKX3-1-202ENST00000523261 SMCHD1A6NHR9 2005 aa17.2■□□□□ 0.34
NKX3-1-202ENST00000523261 GPR37L1O60883 481 aa17.2■□□□□ 0.34
NKX3-1-202ENST00000523261 LDHCP07864 332 aa17.2■□□□□ 0.34
NKX3-1-202ENST00000523261 AAK1Q2M2I8 961 aa17.2■□□□□ 0.34
NKX3-1-202ENST00000523261 CATSPERGQ6ZRH7 1159 aa17.2■□□□□ 0.34
NKX3-1-202ENST00000523261 ANKRD33Q7Z3H0 272 aa17.2■□□□□ 0.34
NKX3-1-202ENST00000523261 NSUN4Q96CB9 384 aaKnown RBP17.2■□□□□ 0.34
NKX3-1-202ENST00000523261 A0A1W2PQ45 241 aaPredicted RBP17.19■□□□□ 0.34
NKX3-1-202ENST00000523261 A0A1W2PQY0 241 aa17.19■□□□□ 0.34
NKX3-1-202ENST00000523261 COBLO75128 1261 aa17.19■□□□□ 0.34
NKX3-1-202ENST00000523261 TIMP1P01033 207 aa17.19■□□□□ 0.34
NKX3-1-202ENST00000523261 TOX2Q96NM4 488 aa17.19■□□□□ 0.34
NKX3-1-202ENST00000523261 SPDYE16A6NNV3 312 aaPredicted RBP17.18■□□□□ 0.34
NKX3-1-202ENST00000523261 STRNO43815 780 aa17.18■□□□□ 0.34
NKX3-1-202ENST00000523261 GSTO1P78417 241 aa17.18■□□□□ 0.34
NKX3-1-202ENST00000523261 PPIGQ13427 754 aaKnown RBP eCLIP17.18■□□□□ 0.34
NKX3-1-202ENST00000523261 RAB30Q15771 203 aa17.18■□□□□ 0.34
NKX3-1-202ENST00000523261 ZYXQ15942 572 aaKnown RBP17.18■□□□□ 0.34
NKX3-1-202ENST00000523261 MFSD5Q6N075 450 aa17.18■□□□□ 0.34
NKX3-1-202ENST00000523261 FOXP4Q8IVH2 680 aaPredicted RBP17.18■□□□□ 0.34
NKX3-1-202ENST00000523261 SH3RF3Q8TEJ3 882 aaPredicted RBP17.18■□□□□ 0.34
NKX3-1-202ENST00000523261 XPNPEP3Q9NQH7 507 aa17.18■□□□□ 0.34
NKX3-1-202ENST00000523261 TBX21Q9UL17 535 aa17.18■□□□□ 0.34
NKX3-1-202ENST00000523261 DCDC2CA8MYV0 355 aa17.17■□□□□ 0.34
NKX3-1-202ENST00000523261 ERC2O15083 957 aa17.17■□□□□ 0.34
NKX3-1-202ENST00000523261 VCAM1P19320 739 aa17.17■□□□□ 0.34
NKX3-1-202ENST00000523261 WDR63Q8IWG1 891 aa17.17■□□□□ 0.34
NKX3-1-202ENST00000523261 CRACR2BQ8N4Y2 399 aaPredicted RBP17.17■□□□□ 0.34
NKX3-1-202ENST00000523261 NKX2-4Q9H2Z4 354 aa17.17■□□□□ 0.34
NKX3-1-202ENST00000523261 MSRAQ9UJ68 235 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms