RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 MFSD6Q6ZSS7 791 aa18.1■□□□□ 0.49
LSM1-203ENST00000520755 TMEM179Q6ZVK1 233 aa18.1■□□□□ 0.49
LSM1-203ENST00000520755 JAKMIP1Q96N16 626 aaKnown RBP18.1■□□□□ 0.49
LSM1-203ENST00000520755 TRIM75PA6NK02 468 aa18.09■□□□□ 0.49
LSM1-203ENST00000520755 CPA1P15085 419 aa18.09■□□□□ 0.49
LSM1-203ENST00000520755 GUCY1A2P33402 732 aa18.09■□□□□ 0.49
LSM1-203ENST00000520755 ANTXR2P58335 489 aa18.09■□□□□ 0.49
LSM1-203ENST00000520755 FAM47AQ5JRC9 791 aa18.09■□□□□ 0.49
LSM1-203ENST00000520755 RNF41Q9H4P4 317 aaPredicted RBP18.09■□□□□ 0.49
LSM1-203ENST00000520755 AS3MTQ9HBK9 375 aa18.09■□□□□ 0.49
LSM1-203ENST00000520755 RANBP6O60518 1105 aaKnown RBP18.08■□□□□ 0.48
LSM1-203ENST00000520755 TSPY3P0CV98 308 aa18.08■□□□□ 0.48
LSM1-203ENST00000520755 TSPY8P0CW00 308 aa18.08■□□□□ 0.48
LSM1-203ENST00000520755 PCP11498 1178 aaKnown RBP18.08■□□□□ 0.48
LSM1-203ENST00000520755 MAP2K2P36507 400 aa18.08■□□□□ 0.48
LSM1-203ENST00000520755 SPP2Q13103 211 aa18.08■□□□□ 0.48
LSM1-203ENST00000520755 KRT32Q14532 448 aa18.08■□□□□ 0.48
LSM1-203ENST00000520755 CYB5R4Q7L1T6 521 aa18.08■□□□□ 0.48
LSM1-203ENST00000520755 CLEC10AQ8IUN9 316 aa18.08■□□□□ 0.48
LSM1-203ENST00000520755 ZNF280CQ8ND82 737 aa18.08■□□□□ 0.48
LSM1-203ENST00000520755 NCOA7Q8NI08 942 aa18.08■□□□□ 0.48
LSM1-203ENST00000520755 AFG3L2Q9Y4W6 797 aa18.08■□□□□ 0.48
LSM1-203ENST00000520755 MANSC4A6NHS7 340 aaPredicted RBP18.07■□□□□ 0.48
LSM1-203ENST00000520755 TSPY2A6NKD2 308 aa18.07■□□□□ 0.48
LSM1-203ENST00000520755 KDM4AO75164 1064 aa18.07■□□□□ 0.48
LSM1-203ENST00000520755 CASTP20810 708 aaKnown RBP18.07■□□□□ 0.48
LSM1-203ENST00000520755 GTF2A2P52657 109 aa18.07■□□□□ 0.48
LSM1-203ENST00000520755 TFAP4Q01664 338 aa18.07■□□□□ 0.48
LSM1-203ENST00000520755 SNAPC2Q13487 334 aa18.07■□□□□ 0.48
LSM1-203ENST00000520755 NEK1Q96PY6 1258 aa18.07■□□□□ 0.48
LSM1-203ENST00000520755 TBC1D2Q9BYX2 928 aa18.07■□□□□ 0.48
LSM1-203ENST00000520755 UPF3BQ9BZI7 483 aaKnown RBP18.07■□□□□ 0.48
LSM1-203ENST00000520755 TM6SF1Q9BZW5 370 aa18.07■□□□□ 0.48
LSM1-203ENST00000520755 CNNM2Q9H8M5 875 aa18.07■□□□□ 0.48
LSM1-203ENST00000520755 KCNH4Q9UQ05 1017 aa18.07■□□□□ 0.48
LSM1-203ENST00000520755 LOC285556D6RIA3 1793 aa18.07■□□□□ 0.48
LSM1-203ENST00000520755 CCL15-CCL14A0A0B4J2E2 113 aa18.06■□□□□ 0.48
LSM1-203ENST00000520755 ATP2B2Q01814 1243 aa18.06■□□□□ 0.48
LSM1-203ENST00000520755 ICA1Q05084 483 aa18.06■□□□□ 0.48
LSM1-203ENST00000520755 CCL15Q16663 113 aa18.06■□□□□ 0.48
LSM1-203ENST00000520755 MS4A4AQ96JQ5 239 aa18.06■□□□□ 0.48
LSM1-203ENST00000520755 TCEANC2Q96MN5 208 aa18.06■□□□□ 0.48
LSM1-203ENST00000520755 FEZ1Q99689 392 aa18.06■□□□□ 0.48
LSM1-203ENST00000520755 WDR18Q9BV38 432 aa18.06■□□□□ 0.48
LSM1-203ENST00000520755 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.06■□□□□ 0.48
LSM1-203ENST00000520755 KRT23Q9C075 422 aa18.06■□□□□ 0.48
LSM1-203ENST00000520755 ZSWIM6Q9HCJ5 1215 aa18.06■□□□□ 0.48
LSM1-203ENST00000520755 CXCL11O14625 94 aa18.05■□□□□ 0.48
LSM1-203ENST00000520755 CETPP11597 493 aa18.05■□□□□ 0.48
LSM1-203ENST00000520755 RPS6KB1P23443 525 aa18.05■□□□□ 0.48
LSM1-203ENST00000520755 EXOSC10Q01780 885 aaKnown RBP18.05■□□□□ 0.48
LSM1-203ENST00000520755 SREBF2Q12772 1141 aa18.05■□□□□ 0.48
LSM1-203ENST00000520755 MTMR2Q13614 643 aa18.05■□□□□ 0.48
LSM1-203ENST00000520755 CHST3Q7LGC8 479 aa18.05■□□□□ 0.48
LSM1-203ENST00000520755 RALYLQ86SE5 291 aaKnown RBP18.05■□□□□ 0.48
LSM1-203ENST00000520755 NEDD1Q8NHV4 660 aa18.05■□□□□ 0.48
LSM1-203ENST00000520755 ACER1Q8TDN7 264 aa18.05■□□□□ 0.48
LSM1-203ENST00000520755 ZSWIM5Q9P217 1185 aa18.05■□□□□ 0.48
LSM1-203ENST00000520755 PARP14Q460N5 1801 aa18.05■□□□□ 0.48
LSM1-203ENST00000520755 IGKV6D-41A0A0C4DH26 115 aa18.04■□□□□ 0.48
LSM1-203ENST00000520755 A0A0G2JLL6 359 aaPredicted RBP18.04■□□□□ 0.48
LSM1-203ENST00000520755 USP17L10C9JJH3 530 aa18.04■□□□□ 0.48
LSM1-203ENST00000520755 NMT2O60551 498 aa18.04■□□□□ 0.48
LSM1-203ENST00000520755 HMGCS2P54868 508 aa18.04■□□□□ 0.48
LSM1-203ENST00000520755 TRDNQ13061 729 aa18.04■□□□□ 0.48
LSM1-203ENST00000520755 DGKZQ13574 1117 aa18.04■□□□□ 0.48
LSM1-203ENST00000520755 ZYXQ15942 572 aaKnown RBP18.04■□□□□ 0.48
LSM1-203ENST00000520755 BLOC1S2Q6QNY1 142 aa18.04■□□□□ 0.48
LSM1-203ENST00000520755 GADL1Q6ZQY3 521 aa18.04■□□□□ 0.48
LSM1-203ENST00000520755 RUFY3Q7L099 469 aa18.04■□□□□ 0.48
LSM1-203ENST00000520755 PRRT2Q7Z6L0 340 aaPredicted RBP18.04■□□□□ 0.48
LSM1-203ENST00000520755 BRI3BPQ8WY22 251 aa18.04■□□□□ 0.48
LSM1-203ENST00000520755 ESR2Q92731 530 aa18.04■□□□□ 0.48
LSM1-203ENST00000520755 TTC14Q96N46 770 aa18.04■□□□□ 0.48
LSM1-203ENST00000520755 KANSL2Q9H9L4 492 aa18.04■□□□□ 0.48
LSM1-203ENST00000520755 ARHGEF10LQ9HCE6 1279 aa18.04■□□□□ 0.48
LSM1-203ENST00000520755 TSHZ2Q9NRE2 1034 aa18.04■□□□□ 0.48
LSM1-203ENST00000520755 WDR19Q8NEZ3 1342 aa18.03■□□□□ 0.48
LSM1-203ENST00000520755 PRC1O43663 620 aa18.03■□□□□ 0.48
LSM1-203ENST00000520755 EEF2P13639 858 aaKnown RBP18.03■□□□□ 0.48
LSM1-203ENST00000520755 PSMA5P28066 241 aa18.03■□□□□ 0.48
LSM1-203ENST00000520755 BACE1P56817 501 aa18.03■□□□□ 0.48
LSM1-203ENST00000520755 DHX32Q7L7V1 743 aaKnown RBP18.03■□□□□ 0.48
LSM1-203ENST00000520755 REM2Q8IYK8 340 aaPredicted RBP18.03■□□□□ 0.48
LSM1-203ENST00000520755 CEP95Q96GE4 821 aa18.03■□□□□ 0.48
LSM1-203ENST00000520755 ZKSCAN3Q9BRR0 538 aa18.03■□□□□ 0.48
LSM1-203ENST00000520755 LRRC2Q9BYS8 371 aa18.03■□□□□ 0.48
LSM1-203ENST00000520755 GPHNQ9NQX3 736 aaPredicted RBP18.03■□□□□ 0.48
LSM1-203ENST00000520755 IL17RBQ9NRM6 502 aa18.03■□□□□ 0.48
LSM1-203ENST00000520755 PCNTO95613 3336 aa18.02■□□□□ 0.48
LSM1-203ENST00000520755 A0A1W2PRG0 241 aa18.02■□□□□ 0.48
LSM1-203ENST00000520755 TESPA1A2RU30 521 aaPredicted RBP18.02■□□□□ 0.48
LSM1-203ENST00000520755 MCM5P33992 734 aa18.02■□□□□ 0.48
LSM1-203ENST00000520755 TM4SF4P48230 202 aa18.02■□□□□ 0.48
LSM1-203ENST00000520755 INHBEP58166 350 aa18.02■□□□□ 0.48
LSM1-203ENST00000520755 RABEP1Q15276 862 aa18.02■□□□□ 0.48
LSM1-203ENST00000520755 FASTKD5Q7L8L6 764 aaKnown RBP18.02■□□□□ 0.48
LSM1-203ENST00000520755 SIAH1Q8IUQ4 282 aa18.02■□□□□ 0.48
LSM1-203ENST00000520755 TMOD4Q9NZQ9 345 aa18.02■□□□□ 0.48
LSM1-203ENST00000520755 CYP46A1Q9Y6A2 500 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms