RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 GIMAP6Q6P9H5 292 aa35.68■■■■□ 3.3
SYNPO-203ENST00000518872 GTF3C2Q8WUA4 911 aaPredicted RBP35.68■■■■□ 3.3
SYNPO-203ENST00000518872 OSBP2Q969R2 916 aa35.68■■■■□ 3.3
SYNPO-203ENST00000518872 FEZ1Q99689 392 aa35.68■■■■□ 3.3
SYNPO-203ENST00000518872 IRF5Q13568 498 aa35.67■■■■□ 3.3
SYNPO-203ENST00000518872 P2RX7Q99572 595 aaKnown RBP35.67■■■■□ 3.3
SYNPO-203ENST00000518872 ZBTB47Q9UFB7 747 aaPredicted RBP35.67■■■■□ 3.3
SYNPO-203ENST00000518872 HERVK_113P62684 666 aa35.66■■■■□ 3.3
SYNPO-203ENST00000518872 SEPT2Q15019 361 aa35.66■■■■□ 3.3
SYNPO-203ENST00000518872 ANKRD45Q5TZF3 282 aa35.66■■■■□ 3.3
SYNPO-203ENST00000518872 TMEM179Q6ZVK1 233 aa35.66■■■■□ 3.3
SYNPO-203ENST00000518872 SLC44A5Q8NCS7 719 aa35.66■■■■□ 3.3
SYNPO-203ENST00000518872 ACER1Q8TDN7 264 aa35.66■■■■□ 3.3
SYNPO-203ENST00000518872 DYNLL2Q96FJ2 89 aa35.66■■■■□ 3.3
SYNPO-203ENST00000518872 CCDC17Q96LX7 622 aa35.66■■■■□ 3.3
SYNPO-203ENST00000518872 ARPP21Q9UBL0 812 aaPredicted RBP35.66■■■■□ 3.3
SYNPO-203ENST00000518872 GABRQQ9UN88 632 aa35.66■■■■□ 3.3
SYNPO-203ENST00000518872 C16orf86Q6ZW13 317 aa35.65■■■■□ 3.3
SYNPO-203ENST00000518872 SLAIN1Q8ND83 568 aa35.65■■■■□ 3.3
SYNPO-203ENST00000518872 COA7Q96BR5 231 aa35.65■■■■□ 3.3
SYNPO-203ENST00000518872 FLT3LGP49771 235 aa35.64■■■■□ 3.3
SYNPO-203ENST00000518872 SBK1Q52WX2 424 aa35.64■■■■□ 3.3
SYNPO-203ENST00000518872 CTR9Q6PD62 1173 aa35.64■■■■□ 3.3
SYNPO-203ENST00000518872 GSG1L2A8MUP6 293 aa35.63■■■■□ 3.29
SYNPO-203ENST00000518872 CDK8P49336 464 aa35.63■■■■□ 3.29
SYNPO-203ENST00000518872 PXYLP1Q8TE99 480 aa35.63■■■■□ 3.29
SYNPO-203ENST00000518872 STAP2Q9UGK3 403 aa35.63■■■■□ 3.29
SYNPO-203ENST00000518872 CYP2D7A0A087X1C5 515 aa35.62■■■■□ 3.29
SYNPO-203ENST00000518872 USP17L15C9J2P7 530 aa35.62■■■■□ 3.29
SYNPO-203ENST00000518872 USP17L13C9JLJ4 530 aa35.62■■■■□ 3.29
SYNPO-203ENST00000518872 USP17L11C9JVI0 530 aa35.62■■■■□ 3.29
SYNPO-203ENST00000518872 USP17L18D6R9N7 530 aa35.62■■■■□ 3.29
SYNPO-203ENST00000518872 USP17L22D6RA61 530 aa35.62■■■■□ 3.29
SYNPO-203ENST00000518872 USP17L17D6RBQ6 530 aa35.62■■■■□ 3.29
SYNPO-203ENST00000518872 USP17L19D6RCP7 530 aa35.62■■■■□ 3.29
SYNPO-203ENST00000518872 USP17L20D6RJB6 530 aa35.62■■■■□ 3.29
SYNPO-203ENST00000518872 GPAA1O43292 621 aa35.62■■■■□ 3.29
SYNPO-203ENST00000518872 GNAT2P19087 354 aa35.62■■■■□ 3.29
SYNPO-203ENST00000518872 VCAM1P19320 739 aa35.62■■■■□ 3.29
SYNPO-203ENST00000518872 USP17L24Q0WX57 530 aa35.62■■■■□ 3.29
SYNPO-203ENST00000518872 MPHOSPH10O00566 681 aaKnown RBP35.61■■■■□ 3.29
SYNPO-203ENST00000518872 ZYXQ15942 572 aaKnown RBP35.6■■■■□ 3.29
SYNPO-203ENST00000518872 CATSPERGQ6ZRH7 1159 aa35.6■■■■□ 3.29
SYNPO-203ENST00000518872 SMC5Q8IY18 1101 aa35.6■■■■□ 3.29
SYNPO-203ENST00000518872 GPRC5AQ8NFJ5 357 aa35.6■■■■□ 3.29
SYNPO-203ENST00000518872 TXNRD2Q9NNW7 524 aa35.6■■■■□ 3.29
SYNPO-203ENST00000518872 RBPJLQ9UBG7 517 aa35.6■■■■□ 3.29
SYNPO-203ENST00000518872 PLXNB2O15031 1838 aa35.6■■■■□ 3.29
SYNPO-203ENST00000518872 GREB1LQ9C091 1923 aaPredicted RBP35.59■■■■□ 3.29
SYNPO-203ENST00000518872 A0A1W2PRG0 241 aa35.59■■■■□ 3.29
SYNPO-203ENST00000518872 SMIM22K7EJ46 135 aa35.59■■■■□ 3.29
SYNPO-203ENST00000518872 LBX2Q6XYB7 198 aa35.59■■■■□ 3.29
SYNPO-203ENST00000518872 ROBO3Q96MS0 1386 aa35.59■■■■□ 3.29
SYNPO-203ENST00000518872 ADCY3O60266 1144 aa35.58■■■■□ 3.29
SYNPO-203ENST00000518872 AKR1B1P15121 316 aa35.58■■■■□ 3.29
SYNPO-203ENST00000518872 EN2P19622 333 aaPredicted RBP35.58■■■■□ 3.29
SYNPO-203ENST00000518872 FSD1Q9BTV5 496 aa35.58■■■■□ 3.29
SYNPO-203ENST00000518872 RWDD1Q9H446 243 aaPredicted RBP35.58■■■■□ 3.29
SYNPO-203ENST00000518872 M0R2C6 588 aa35.57■■■■□ 3.28
SYNPO-203ENST00000518872 PDE1AP54750 535 aa35.57■■■■□ 3.28
SYNPO-203ENST00000518872 UBXN2AP68543 259 aa35.57■■■■□ 3.28
SYNPO-203ENST00000518872 POTEEQ6S8J3 1075 aa35.57■■■■□ 3.28
SYNPO-203ENST00000518872 MKI67P46013 3256 aaKnown RBP35.56■■■■□ 3.28
SYNPO-203ENST00000518872 ERVK-9P63128 1117 aa35.56■■■■□ 3.28
SYNPO-203ENST00000518872 ERVK-24P63145 666 aa35.56■■■■□ 3.28
SYNPO-203ENST00000518872 MTFR1Q15390 333 aa35.56■■■■□ 3.28
SYNPO-203ENST00000518872 ZMYM1Q5SVZ6 1142 aa35.56■■■■□ 3.28
SYNPO-203ENST00000518872 GJD2Q9UKL4 321 aa35.56■■■■□ 3.28
SYNPO-203ENST00000518872 RABGAP1Q9Y3P9 1069 aa35.56■■■■□ 3.28
SYNPO-203ENST00000518872 RLFQ13129 1914 aa35.55■■■■□ 3.28
SYNPO-203ENST00000518872 TICAM2Q86XR7 235 aa35.55■■■■□ 3.28
SYNPO-203ENST00000518872 SIAH1Q8IUQ4 282 aa35.55■■■■□ 3.28
SYNPO-203ENST00000518872 SH2D4AQ9H788 454 aa35.55■■■■□ 3.28
SYNPO-203ENST00000518872 ARHGEF10LQ9HCE6 1279 aa35.55■■■■□ 3.28
SYNPO-203ENST00000518872 EPB41L4AQ9HCS5 686 aaPredicted RBP35.55■■■■□ 3.28
SYNPO-203ENST00000518872 TMX2Q9Y320 296 aa35.55■■■■□ 3.28
SYNPO-203ENST00000518872 ICA1Q05084 483 aa35.54■■■■□ 3.28
SYNPO-203ENST00000518872 EXOC6Q8TAG9 804 aa35.54■■■■□ 3.28
SYNPO-203ENST00000518872 LPAR1Q92633 364 aa35.54■■■■□ 3.28
SYNPO-203ENST00000518872 PATL2C9JE40 543 aaKnown RBP35.53■■■■□ 3.28
SYNPO-203ENST00000518872 MAPK4P31152 587 aa35.53■■■■□ 3.28
SYNPO-203ENST00000518872 EVI5LQ96CN4 794 aa35.53■■■■□ 3.28
SYNPO-203ENST00000518872 RPAP3Q9H6T3 665 aaPredicted RBP35.53■■■■□ 3.28
SYNPO-203ENST00000518872 Q3C1V9 767 aa35.52■■■■□ 3.28
SYNPO-203ENST00000518872 NKX2-3Q8TAU0 364 aa35.52■■■■□ 3.28
SYNPO-203ENST00000518872 KANSL2Q9H9L4 492 aa35.52■■■■□ 3.28
SYNPO-203ENST00000518872 BIN2Q9UBW5 565 aaPredicted RBP35.52■■■■□ 3.28
SYNPO-203ENST00000518872 MYCP01106 439 aaPredicted RBP35.51■■■■□ 3.28
SYNPO-203ENST00000518872 GJB1P08034 283 aa35.51■■■■□ 3.28
SYNPO-203ENST00000518872 CCL5P13501 91 aa35.51■■■■□ 3.28
SYNPO-203ENST00000518872 SEC62Q99442 399 aaKnown RBP35.51■■■■□ 3.28
SYNPO-203ENST00000518872 PARP14Q460N5 1801 aa35.5■■■■□ 3.27
SYNPO-203ENST00000518872 A0A0G2JMZ2 1700 aa35.5■■■■□ 3.27
SYNPO-203ENST00000518872 CNMDO75829 334 aa35.5■■■■□ 3.27
SYNPO-203ENST00000518872 ELNP15502 786 aa35.5■■■■□ 3.27
SYNPO-203ENST00000518872 IFNL3Q8IZI9 196 aa35.5■■■■□ 3.27
SYNPO-203ENST00000518872 SOCS4Q8WXH5 440 aa35.5■■■■□ 3.27
SYNPO-203ENST00000518872 PAGR1Q9BTK6 254 aa35.5■■■■□ 3.27
SYNPO-203ENST00000518872 VCPKMTQ9H867 229 aa35.5■■■■□ 3.27
SYNPO-203ENST00000518872 SPDYE16A6NNV3 312 aaPredicted RBP35.49■■■■□ 3.27
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms