RNA–Protein interactions for RNA: ENST00000515711.1

LMNA-224, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-224	ENST00000515711	ALG1	Q9BT22	464 aa		13.88	□□□□□ -0.19
LMNA-224	ENST00000515711	MYL10	Q9BUA6	226 aa		13.88	□□□□□ -0.19
LMNA-224	ENST00000515711	RNF26	Q9BY78	433 aa	Predicted RBP	13.88	□□□□□ -0.19
LMNA-224	ENST00000515711	KAT14	Q9H8E8	782 aa		13.88	□□□□□ -0.19
LMNA-224	ENST00000515711	FAM217B	Q9NTX9	383 aa	Predicted RBP	13.88	□□□□□ -0.19
LMNA-224	ENST00000515711	WBP1L	Q9NX94	342 aa		13.88	□□□□□ -0.19
LMNA-224	ENST00000515711	RBM27	Q9P2N5	1060 aa	Known RBP	13.88	□□□□□ -0.19
LMNA-224	ENST00000515711	HDAC9	Q9UKV0	1011 aa		13.88	□□□□□ -0.19
LMNA-224	ENST00000515711	MYH4	Q9Y623	1939 aa		13.88	□□□□□ -0.19
LMNA-224	ENST00000515711	SMIM22	K7EJ46	135 aa		13.87	□□□□□ -0.19
LMNA-224	ENST00000515711	RASA1	P20936	1047 aa		13.87	□□□□□ -0.19
LMNA-224	ENST00000515711	CDK8	P49336	464 aa		13.87	□□□□□ -0.19
LMNA-224	ENST00000515711	MMP14	P50281	582 aa		13.87	□□□□□ -0.19
LMNA-224	ENST00000515711	AKAP17A	Q02040	695 aa	Known RBP	13.87	□□□□□ -0.19
LMNA-224	ENST00000515711	PICALM	Q13492	652 aa		13.87	□□□□□ -0.19
LMNA-224	ENST00000515711	FAM47A	Q5JRC9	791 aa		13.87	□□□□□ -0.19
LMNA-224	ENST00000515711	APOBEC3H	Q6NTF7	200 aa	Known RBP	13.87	□□□□□ -0.19
LMNA-224	ENST00000515711	FERMT3	Q86UX7	667 aa		13.87	□□□□□ -0.19
LMNA-224	ENST00000515711	KIAA0825	Q8IV33	1275 aa		13.87	□□□□□ -0.19
LMNA-224	ENST00000515711	CCDC144CP	Q8IYA2	1237 aa		13.87	□□□□□ -0.19
LMNA-224	ENST00000515711	MXD3	Q9BW11	206 aa		13.87	□□□□□ -0.19
LMNA-224	ENST00000515711	IDI2	Q9BXS1	227 aa		13.87	□□□□□ -0.19
LMNA-224	ENST00000515711	SLC26A6	Q9BXS9	759 aa		13.87	□□□□□ -0.19
LMNA-224	ENST00000515711	EHD4	Q9H223	541 aa		13.87	□□□□□ -0.19
LMNA-224	ENST00000515711	DHX36	Q9H2U1	1008 aa	Known RBP	13.87	□□□□□ -0.19
LMNA-224	ENST00000515711	LTBP3	Q9NS15	1303 aa		13.87	□□□□□ -0.19
LMNA-224	ENST00000515711	COL4A5	P29400	1685 aa		13.86	□□□□□ -0.19
LMNA-224	ENST00000515711	YDJC	A8MPS7	323 aa		13.86	□□□□□ -0.19
LMNA-224	ENST00000515711	XBP1	P17861	261 aa		13.86	□□□□□ -0.19
LMNA-224	ENST00000515711	GNAQ	P50148	359 aa		13.86	□□□□□ -0.19
LMNA-224	ENST00000515711	GABPA	Q06546	454 aa		13.86	□□□□□ -0.19
LMNA-224	ENST00000515711	TROAP	Q12815	778 aa		13.86	□□□□□ -0.19
LMNA-224	ENST00000515711	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	13.86	□□□□□ -0.19
LMNA-224	ENST00000515711	RSBN1L	Q6PCB5	846 aa	Predicted RBP	13.86	□□□□□ -0.19
LMNA-224	ENST00000515711	FOXD4L3	Q6VB84	417 aa	Predicted RBP	13.86	□□□□□ -0.19
LMNA-224	ENST00000515711	NEDD1	Q8NHV4	660 aa		13.86	□□□□□ -0.19
LMNA-224	ENST00000515711	DYNLL2	Q96FJ2	89 aa		13.86	□□□□□ -0.19
LMNA-224	ENST00000515711	TAOK3	Q9H2K8	898 aa		13.86	□□□□□ -0.19
LMNA-224	ENST00000515711	DICER1	Q9UPY3	1922 aa	Known RBP	13.86	□□□□□ -0.19
LMNA-224	ENST00000515711	SBF1	O95248	1867 aa		13.85	□□□□□ -0.19
LMNA-224	ENST00000515711	DTNB	O60941	627 aa		13.85	□□□□□ -0.19
LMNA-224	ENST00000515711	VIL1	P09327	827 aa	Known RBP	13.85	□□□□□ -0.19
LMNA-224	ENST00000515711	POTEI	P0CG38	1075 aa		13.85	□□□□□ -0.19
LMNA-224	ENST00000515711	POTEJ	P0CG39	1038 aa		13.85	□□□□□ -0.19
LMNA-224	ENST00000515711	RBM5	P52756	815 aa	Known RBP eCLIP	13.85	□□□□□ -0.19
LMNA-224	ENST00000515711	TMTC3	Q6ZXV5	915 aa		13.85	□□□□□ -0.19
LMNA-224	ENST00000515711	NBPF11	Q86T75	865 aa		13.85	□□□□□ -0.19
LMNA-224	ENST00000515711	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	13.85	□□□□□ -0.19
LMNA-224	ENST00000515711	GPT2	Q8TD30	523 aa		13.85	□□□□□ -0.19
LMNA-224	ENST00000515711	PHKB	Q93100	1093 aa		13.85	□□□□□ -0.19
LMNA-224	ENST00000515711	SPATA32	Q96LK8	384 aa		13.85	□□□□□ -0.19
LMNA-224	ENST00000515711	ZNF277	Q9NRM2	450 aa	Predicted RBP	13.85	□□□□□ -0.19
LMNA-224	ENST00000515711	TMOD2	Q9NZR1	351 aa		13.85	□□□□□ -0.19
LMNA-224	ENST00000515711	SERPINB13	Q9UIV8	391 aa		13.85	□□□□□ -0.19
LMNA-224	ENST00000515711	ZNRF3	Q9ULT6	936 aa		13.85	□□□□□ -0.19
LMNA-224	ENST00000515711	ZC3H4	Q9UPT8	1303 aa	Known RBP	13.85	□□□□□ -0.19
LMNA-224	ENST00000515711	PRPF3	O43395	683 aa	Known RBP	13.84	□□□□□ -0.19
LMNA-224	ENST00000515711	ENTPD3	O75355	529 aa		13.84	□□□□□ -0.19
LMNA-224	ENST00000515711	FOSB	P53539	338 aa		13.84	□□□□□ -0.19
LMNA-224	ENST00000515711	EVX2	Q03828	476 aa		13.84	□□□□□ -0.19
LMNA-224	ENST00000515711	SAFB	Q15424	915 aa	Known RBP eCLIP	13.84	□□□□□ -0.19
LMNA-224	ENST00000515711	SLC4A8	Q2Y0W8	1093 aa		13.84	□□□□□ -0.19
LMNA-224	ENST00000515711	L1TD1	Q5T7N2	865 aa	Known RBP	13.84	□□□□□ -0.19
LMNA-224	ENST00000515711	RCSD1	Q6JBY9	416 aa		13.84	□□□□□ -0.19
LMNA-224	ENST00000515711	CAVIN1	Q6NZI2	390 aa	Known RBP	13.84	□□□□□ -0.19
LMNA-224	ENST00000515711	SLC44A5	Q8NCS7	719 aa		13.84	□□□□□ -0.19
LMNA-224	ENST00000515711	PNMA1	Q8ND90	353 aa		13.84	□□□□□ -0.19
LMNA-224	ENST00000515711	AGBL3	Q8NEM8	1001 aa		13.84	□□□□□ -0.19
LMNA-224	ENST00000515711	CHAMP1	Q96JM3	812 aa		13.84	□□□□□ -0.19
LMNA-224	ENST00000515711	GZF1	Q9H116	711 aa	Predicted RBP	13.84	□□□□□ -0.19
LMNA-224	ENST00000515711	GDPD2	Q9HCC8	539 aa		13.84	□□□□□ -0.19
LMNA-224	ENST00000515711	DDX4	Q9NQI0	724 aa	Known RBP	13.84	□□□□□ -0.19
LMNA-224	ENST00000515711	KCNQ5	Q9NR82	932 aa		13.84	□□□□□ -0.19
LMNA-224	ENST00000515711	ATRNL1	Q5VV63	1379 aa		13.83	□□□□□ -0.19
LMNA-224	ENST00000515711	DEK	P35659	375 aa	Known RBP	13.83	□□□□□ -0.2
LMNA-224	ENST00000515711	NOV	P48745	357 aa		13.83	□□□□□ -0.2
LMNA-224	ENST00000515711	ZNF445	P59923	1031 aa		13.83	□□□□□ -0.2
LMNA-224	ENST00000515711	GUCY1B3	Q02153	619 aa		13.83	□□□□□ -0.2
LMNA-224	ENST00000515711	KIF23	Q02241	960 aa	Predicted RBP	13.83	□□□□□ -0.2
LMNA-224	ENST00000515711	GNL2	Q13823	731 aa	Known RBP	13.83	□□□□□ -0.2
LMNA-224	ENST00000515711	GRM4	Q14833	912 aa		13.83	□□□□□ -0.2
LMNA-224	ENST00000515711	CFAP100	Q494V2	611 aa		13.83	□□□□□ -0.2
LMNA-224	ENST00000515711	KRT40	Q6A162	431 aa		13.83	□□□□□ -0.2
LMNA-224	ENST00000515711	CHADL	Q6NUI6	762 aa		13.83	□□□□□ -0.2
LMNA-224	ENST00000515711	FAM177A1	Q8N128	213 aa	Predicted RBP	13.83	□□□□□ -0.2
LMNA-224	ENST00000515711	OGFOD1	Q8N543	542 aa		13.83	□□□□□ -0.2
LMNA-224	ENST00000515711	LEO1	Q8WVC0	666 aa	Predicted RBP	13.83	□□□□□ -0.2
LMNA-224	ENST00000515711	CCDC17	Q96LX7	622 aa		13.83	□□□□□ -0.2
LMNA-224	ENST00000515711	LZTS2	Q9BRK4	669 aa		13.83	□□□□□ -0.2
LMNA-224	ENST00000515711	IL17RB	Q9NRM6	502 aa		13.83	□□□□□ -0.2
LMNA-224	ENST00000515711	CNTNAP5	Q8WYK1	1306 aa		13.83	□□□□□ -0.2
LMNA-224	ENST00000515711	GOLGA6L4	A6NEF3	574 aa		13.82	□□□□□ -0.2
LMNA-224	ENST00000515711	PSMD14	O00487	310 aa		13.82	□□□□□ -0.2
LMNA-224	ENST00000515711	NMT2	O60551	498 aa		13.82	□□□□□ -0.2
LMNA-224	ENST00000515711	LETM1	O95202	739 aa	Predicted RBP	13.82	□□□□□ -0.2
LMNA-224	ENST00000515711	YEATS4	O95619	227 aa		13.82	□□□□□ -0.2
LMNA-224	ENST00000515711	TOP1	P11387	765 aa	Known RBP	13.82	□□□□□ -0.2
LMNA-224	ENST00000515711	LMNB1	P20700	586 aa		13.82	□□□□□ -0.2
LMNA-224	ENST00000515711	MTMR14	Q8NCE2	650 aa		13.82	□□□□□ -0.2
LMNA-224	ENST00000515711	JDP2	Q8WYK2	163 aa		13.82	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms