RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 KRTAP9-4Q9BYQ2 154 aa7.81□□□□□ -1.16
NUP54-218ENST00000515460 PAK6Q9NQU5 681 aaPredicted RBP7.81□□□□□ -1.16
NUP54-218ENST00000515460 PPP4R2Q9NY27 417 aa7.81□□□□□ -1.16
NUP54-218ENST00000515460 PLEKHH2Q8IVE3 1493 aa7.81□□□□□ -1.16
NUP54-218ENST00000515460 KIF3BO15066 747 aa7.8□□□□□ -1.16
NUP54-218ENST00000515460 TMPRSS2O15393 492 aa7.8□□□□□ -1.16
NUP54-218ENST00000515460 FCGRTP55899 365 aa7.8□□□□□ -1.16
NUP54-218ENST00000515460 PI16Q6UXB8 463 aa7.8□□□□□ -1.16
NUP54-218ENST00000515460 BRINP3Q76B58 766 aa7.8□□□□□ -1.16
NUP54-218ENST00000515460 GLIS3Q8NEA6 775 aa7.8□□□□□ -1.16
NUP54-218ENST00000515460 CRIM1Q9NZV1 1036 aa7.8□□□□□ -1.16
NUP54-218ENST00000515460 GPN3Q9UHW5 284 aaPredicted RBP7.8□□□□□ -1.16
NUP54-218ENST00000515460 PNPLA6Q8IY17 1366 aa7.8□□□□□ -1.16
NUP54-218ENST00000515460 RALGAPBQ86X10 1494 aa7.8□□□□□ -1.16
NUP54-218ENST00000515460 MAST1Q9Y2H9 1570 aa7.8□□□□□ -1.16
NUP54-218ENST00000515460 PRDM15P57071 1507 aaPredicted RBP7.79□□□□□ -1.16
NUP54-218ENST00000515460 CDC42BPAQ5VT25 1732 aa7.79□□□□□ -1.16
NUP54-218ENST00000515460 ZNF862O60290 1169 aa7.79□□□□□ -1.16
NUP54-218ENST00000515460 RNGTTO60942 597 aaKnown RBP7.79□□□□□ -1.16
NUP54-218ENST00000515460 HTRA3P83110 453 aa7.79□□□□□ -1.16
NUP54-218ENST00000515460 ID3Q02535 119 aa7.79□□□□□ -1.16
NUP54-218ENST00000515460 CBLL1Q75N03 491 aa7.79□□□□□ -1.16
NUP54-218ENST00000515460 ZSCAN29Q8IWY8 852 aaPredicted RBP7.79□□□□□ -1.16
NUP54-218ENST00000515460 AGBL5Q8NDL9 886 aa7.79□□□□□ -1.16
NUP54-218ENST00000515460 KCNB2Q92953 911 aa7.79□□□□□ -1.16
NUP54-218ENST00000515460 FANCD2OSQ96PS1 177 aa7.79□□□□□ -1.16
NUP54-218ENST00000515460 CAMSAP2Q08AD1 1489 aa7.79□□□□□ -1.16
NUP54-218ENST00000515460 GSTP1P09211 210 aaKnown RBP7.78□□□□□ -1.16
NUP54-218ENST00000515460 FAM87AP0C7U9 286 aa7.78□□□□□ -1.16
NUP54-218ENST00000515460 HNRNPUQ00839 825 aaKnown RBP eCLIP7.78□□□□□ -1.16
NUP54-218ENST00000515460 PLCB3Q01970 1234 aa7.78□□□□□ -1.16
NUP54-218ENST00000515460 CYP27C1Q4G0S4 372 aa7.78□□□□□ -1.16
NUP54-218ENST00000515460 ZNF574Q6ZN55 896 aaPredicted RBP7.78□□□□□ -1.16
NUP54-218ENST00000515460 TRAIPQ9BWF2 469 aa7.78□□□□□ -1.16
NUP54-218ENST00000515460 ATXN3LQ9H3M9 355 aa7.78□□□□□ -1.16
NUP54-218ENST00000515460 SLC5A6Q9Y289 635 aa7.78□□□□□ -1.16
NUP54-218ENST00000515460 PLXNC1O60486 1568 aa7.78□□□□□ -1.16
NUP54-218ENST00000515460 CEP162Q5TB80 1403 aa7.78□□□□□ -1.16
NUP54-218ENST00000515460 MIA2Q96PC5 1412 aa7.78□□□□□ -1.16
NUP54-218ENST00000515460 SETD5Q9C0A6 1442 aa7.78□□□□□ -1.16
NUP54-218ENST00000515460 SYNGAP1Q96PV0 1343 aa7.78□□□□□ -1.16
NUP54-218ENST00000515460 WASHC2CQ9Y4E1 1318 aa7.78□□□□□ -1.16
NUP54-218ENST00000515460 KDM5AP29375 1690 aaKnown RBP7.77□□□□□ -1.17
NUP54-218ENST00000515460 TREHO43280 583 aa7.77□□□□□ -1.17
NUP54-218ENST00000515460 HCLS1P14317 486 aaPredicted RBP7.77□□□□□ -1.17
NUP54-218ENST00000515460 PPP2R3AQ06190 1150 aa7.77□□□□□ -1.17
NUP54-218ENST00000515460 BNIP3Q12983 259 aa7.77□□□□□ -1.17
NUP54-218ENST00000515460 SMYD4Q8IYR2 804 aaPredicted RBP7.77□□□□□ -1.17
NUP54-218ENST00000515460 FAM181AQ8N9Y4 354 aa7.77□□□□□ -1.17
NUP54-218ENST00000515460 BCL7CQ8WUZ0 217 aaPredicted RBP7.77□□□□□ -1.17
NUP54-218ENST00000515460 ASIC4Q96FT7 647 aa7.77□□□□□ -1.17
NUP54-218ENST00000515460 SLC26A8Q96RN1 970 aa7.77□□□□□ -1.17
NUP54-218ENST00000515460 SYT17Q9BSW7 474 aa7.77□□□□□ -1.17
NUP54-218ENST00000515460 DISC1Q9NRI5 854 aa7.77□□□□□ -1.17
NUP54-218ENST00000515460 TMEM39AQ9NV64 488 aa7.77□□□□□ -1.17
NUP54-218ENST00000515460 INO80Q9ULG1 1556 aaPredicted RBP7.76□□□□□ -1.17
NUP54-218ENST00000515460 ARHGAP23Q9P227 1491 aa7.76□□□□□ -1.17
NUP54-218ENST00000515460 PNMA6FA0A0J9YX94 578 aa7.76□□□□□ -1.17
NUP54-218ENST00000515460 XRCC5P13010 732 aaKnown RBP7.76□□□□□ -1.17
NUP54-218ENST00000515460 TTLL4Q14679 1199 aa7.76□□□□□ -1.17
NUP54-218ENST00000515460 PLCL1Q15111 1095 aa7.76□□□□□ -1.17
NUP54-218ENST00000515460 KRT27Q7Z3Y8 459 aa7.76□□□□□ -1.17
NUP54-218ENST00000515460 SPRED2Q7Z698 418 aa7.76□□□□□ -1.17
NUP54-218ENST00000515460 ZNF526Q8TF50 670 aaPredicted RBP7.76□□□□□ -1.17
NUP54-218ENST00000515460 LRRC59Q96AG4 307 aaKnown RBP7.76□□□□□ -1.17
NUP54-218ENST00000515460 BCO2Q9BYV7 579 aa7.76□□□□□ -1.17
NUP54-218ENST00000515460 PODXL2Q9NZ53 605 aa7.76□□□□□ -1.17
NUP54-218ENST00000515460 AKAP2Q9Y2D5 859 aa7.76□□□□□ -1.17
NUP54-218ENST00000515460 GLI3P10071 1580 aa7.76□□□□□ -1.17
NUP54-218ENST00000515460 NRKQ7Z2Y5 1582 aa7.76□□□□□ -1.17
NUP54-218ENST00000515460 TSPY4P0CV99 314 aa7.75□□□□□ -1.17
NUP54-218ENST00000515460 TSPY10P0CW01 314 aa7.75□□□□□ -1.17
NUP54-218ENST00000515460 DSC3Q14574 896 aa7.75□□□□□ -1.17
NUP54-218ENST00000515460 ENOX2Q16206 610 aaKnown RBP7.75□□□□□ -1.17
NUP54-218ENST00000515460 KIF4BQ2VIQ3 1234 aa7.75□□□□□ -1.17
NUP54-218ENST00000515460 ERICH6BQ5W0A0 696 aa7.75□□□□□ -1.17
NUP54-218ENST00000515460 PLD6Q8N2A8 252 aaKnown RBP7.75□□□□□ -1.17
NUP54-218ENST00000515460 SSU72Q9NP77 194 aaKnown RBP7.75□□□□□ -1.17
NUP54-218ENST00000515460 NLRP1Q9C000 1473 aa7.75□□□□□ -1.17
NUP54-218ENST00000515460 LOC105371045A0A1W2PR82 267 aa7.74□□□□□ -1.17
NUP54-218ENST00000515460 OGFOD2Q6N063 350 aa7.74□□□□□ -1.17
NUP54-218ENST00000515460 SULF2Q8IWU5 870 aa7.74□□□□□ -1.17
NUP54-218ENST00000515460 JMYQ8N9B5 988 aa7.74□□□□□ -1.17
NUP54-218ENST00000515460 STK35Q8TDR2 534 aa7.74□□□□□ -1.17
NUP54-218ENST00000515460 FBF1Q8TES7 1133 aa7.74□□□□□ -1.17
NUP54-218ENST00000515460 ASB16Q96NS5 453 aa7.74□□□□□ -1.17
NUP54-218ENST00000515460 CAMKK2Q96RR4 588 aa7.74□□□□□ -1.17
NUP54-218ENST00000515460 KRT82Q9NSB4 513 aa7.74□□□□□ -1.17
NUP54-218ENST00000515460 NCOA2Q15596 1464 aa7.74□□□□□ -1.17
NUP54-218ENST00000515460 ATP10DQ9P241 1426 aa7.73□□□□□ -1.17
NUP54-218ENST00000515460 LEFTY1O75610 366 aa7.73□□□□□ -1.17
NUP54-218ENST00000515460 ITGB5P18084 799 aa7.73□□□□□ -1.17
NUP54-218ENST00000515460 MAPK8P45983 427 aa7.73□□□□□ -1.17
NUP54-218ENST00000515460 GPR162Q16538 588 aa7.73□□□□□ -1.17
NUP54-218ENST00000515460 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.73□□□□□ -1.17
NUP54-218ENST00000515460 MAP1SQ66K74 1059 aaPredicted RBP7.73□□□□□ -1.17
NUP54-218ENST00000515460 NXPE4Q6UWF7 544 aa7.73□□□□□ -1.17
NUP54-218ENST00000515460 ARHGAP27Q6ZUM4 889 aa7.73□□□□□ -1.17
NUP54-218ENST00000515460 PCDHGC5Q9Y5F6 944 aa7.73□□□□□ -1.17
NUP54-218ENST00000515460 CLSPNQ9HAW4 1339 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms