RNA–Protein interactions for RNA: ENST00000514439.1

CPNE4-211, Transcript of copine 4, humanhuman

TSL 1 (best)

Gene CPNE4, Length 2,312 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-211ENST00000514439 LRMPQ12912 555 aa9.42□□□□□ -0.9
CPNE4-211ENST00000514439 PNOCQ13519 176 aa9.42□□□□□ -0.9
CPNE4-211ENST00000514439 CCDC144BQ3MJ40 725 aa9.42□□□□□ -0.9
CPNE4-211ENST00000514439 DNTTIP2Q5QJE6 756 aaKnown RBP9.42□□□□□ -0.9
CPNE4-211ENST00000514439 C12orf60Q5U649 245 aa9.42□□□□□ -0.9
CPNE4-211ENST00000514439 KRBA2Q6ZNG9 492 aa9.42□□□□□ -0.9
CPNE4-211ENST00000514439 METTL16Q86W50 562 aaKnown RBP9.42□□□□□ -0.9
CPNE4-211ENST00000514439 CTCFLQ8NI51 663 aaPredicted RBP9.42□□□□□ -0.9
CPNE4-211ENST00000514439 LONRF3Q496Y0 759 aa9.42□□□□□ -0.9
CPNE4-211ENST00000514439 SLC27A3Q5K4L6 730 aa9.42□□□□□ -0.9
CPNE4-211ENST00000514439 ISM2Q6H9L7 571 aa9.42□□□□□ -0.9
CPNE4-211ENST00000514439 RCSD1Q6JBY9 416 aa9.42□□□□□ -0.9
CPNE4-211ENST00000514439 SRBD1Q8N5C6 995 aaKnown RBP9.42□□□□□ -0.9
CPNE4-211ENST00000514439 CNNM3Q8NE01 707 aa9.42□□□□□ -0.9
CPNE4-211ENST00000514439 RBM17Q96I25 401 aaKnown RBP9.42□□□□□ -0.9
CPNE4-211ENST00000514439 ROBO3Q96MS0 1386 aa9.41□□□□□ -0.9
CPNE4-211ENST00000514439 CAPN15O75808 1086 aa9.41□□□□□ -0.9
CPNE4-211ENST00000514439 BAG3O95817 575 aa9.41□□□□□ -0.9
CPNE4-211ENST00000514439 ATP2B4P23634 1241 aa9.41□□□□□ -0.9
CPNE4-211ENST00000514439 DDR1Q08345 913 aa9.41□□□□□ -0.9
CPNE4-211ENST00000514439 EARS2Q5JPH6 523 aaKnown RBP9.41□□□□□ -0.9
CPNE4-211ENST00000514439 DYNLL2Q96FJ2 89 aa9.41□□□□□ -0.9
CPNE4-211ENST00000514439 QTRT2Q9H974 415 aaKnown RBP9.41□□□□□ -0.9
CPNE4-211ENST00000514439 CD209Q9NNX6 404 aa9.41□□□□□ -0.9
CPNE4-211ENST00000514439 FAM13BQ9NYF5 915 aa9.41□□□□□ -0.9
CPNE4-211ENST00000514439 GGA1Q9UJY5 639 aa9.41□□□□□ -0.9
CPNE4-211ENST00000514439 CEP131Q9UPN4 1083 aa9.41□□□□□ -0.9
CPNE4-211ENST00000514439 EP400Q96L91 3159 aa9.41□□□□□ -0.9
CPNE4-211ENST00000514439 MYH6P13533 1939 aa9.41□□□□□ -0.9
CPNE4-211ENST00000514439 PPP4CP60510 307 aa9.4□□□□□ -0.9
CPNE4-211ENST00000514439 TFAP4Q01664 338 aa9.4□□□□□ -0.9
CPNE4-211ENST00000514439 NCAPHQ15003 741 aa9.4□□□□□ -0.9
CPNE4-211ENST00000514439 NPY5RQ15761 445 aa9.4□□□□□ -0.9
CPNE4-211ENST00000514439 ZNF579Q8NAF0 562 aaKnown RBP9.4□□□□□ -0.9
CPNE4-211ENST00000514439 TGFBRAP1Q8WUH2 860 aa9.4□□□□□ -0.9
CPNE4-211ENST00000514439 CACTINQ8WUQ7 758 aaKnown RBP9.4□□□□□ -0.9
CPNE4-211ENST00000514439 NOL10Q9BSC4 688 aaKnown RBP9.4□□□□□ -0.9
CPNE4-211ENST00000514439 RTFDC1Q9BY42 306 aaPredicted RBP9.4□□□□□ -0.9
CPNE4-211ENST00000514439 SRPRBQ9Y5M8 271 aaKnown RBP9.4□□□□□ -0.9
CPNE4-211ENST00000514439 TRIM75PA6NK02 468 aa9.4□□□□□ -0.9
CPNE4-211ENST00000514439 FOXN1O15353 648 aa9.4□□□□□ -0.9
CPNE4-211ENST00000514439 TRIM37O94972 964 aa9.4□□□□□ -0.9
CPNE4-211ENST00000514439 LDHCP07864 332 aa9.4□□□□□ -0.9
CPNE4-211ENST00000514439 FOXP4Q8IVH2 680 aaPredicted RBP9.4□□□□□ -0.9
CPNE4-211ENST00000514439 TNFRSF25Q93038 417 aa9.4□□□□□ -0.9
CPNE4-211ENST00000514439 BRMS1Q9HCU9 246 aa9.4□□□□□ -0.9
CPNE4-211ENST00000514439 IL17RBQ9NRM6 502 aa9.4□□□□□ -0.9
CPNE4-211ENST00000514439 UQCRHLA0A096LP55 91 aa9.39□□□□□ -0.91
CPNE4-211ENST00000514439 SMTNL1A8MU46 457 aa9.39□□□□□ -0.91
CPNE4-211ENST00000514439 POLRMTO00411 1230 aaKnown RBP9.39□□□□□ -0.91
CPNE4-211ENST00000514439 WNT7AO00755 349 aa9.39□□□□□ -0.91
CPNE4-211ENST00000514439 IKBKBO14920 756 aa9.39□□□□□ -0.91
CPNE4-211ENST00000514439 BBOX1O75936 387 aa9.39□□□□□ -0.91
CPNE4-211ENST00000514439 UQCRHP07919 91 aa9.39□□□□□ -0.91
CPNE4-211ENST00000514439 SCG2P13521 617 aa9.39□□□□□ -0.91
CPNE4-211ENST00000514439 IL1R1P14778 569 aa9.39□□□□□ -0.91
CPNE4-211ENST00000514439 HOXA10P31260 410 aaPredicted RBP9.39□□□□□ -0.91
CPNE4-211ENST00000514439 KIF5BP33176 963 aa9.39□□□□□ -0.91
CPNE4-211ENST00000514439 NT5C2P49902 561 aa9.39□□□□□ -0.91
CPNE4-211ENST00000514439 TPM4P67936 248 aa9.39□□□□□ -0.91
CPNE4-211ENST00000514439 MDM2Q00987 491 aaPredicted RBP9.39□□□□□ -0.91
CPNE4-211ENST00000514439 NOM1Q5C9Z4 860 aaKnown RBP9.39□□□□□ -0.91
CPNE4-211ENST00000514439 KRT27Q7Z3Y8 459 aa9.39□□□□□ -0.91
CPNE4-211ENST00000514439 DGKHQ86XP1 1220 aa9.39□□□□□ -0.91
CPNE4-211ENST00000514439 MAPKAPK5Q8IW41 473 aa9.39□□□□□ -0.91
CPNE4-211ENST00000514439 AMOTL1Q8IY63 956 aa9.39□□□□□ -0.91
CPNE4-211ENST00000514439 ELOA2Q8IYF1 753 aaPredicted RBP9.39□□□□□ -0.91
CPNE4-211ENST00000514439 SLC44A5Q8NCS7 719 aa9.39□□□□□ -0.91
CPNE4-211ENST00000514439 CSRNP2Q9H175 543 aa9.39□□□□□ -0.91
CPNE4-211ENST00000514439 KAT14Q9H8E8 782 aa9.39□□□□□ -0.91
CPNE4-211ENST00000514439 MKNK2Q9HBH9 465 aa9.39□□□□□ -0.91
CPNE4-211ENST00000514439 PCDHA5Q9Y5H7 936 aa9.39□□□□□ -0.91
CPNE4-211ENST00000514439 MORC2Q9Y6X9 1032 aaPredicted RBP9.39□□□□□ -0.91
CPNE4-211ENST00000514439 POLR2DO15514 142 aaKnown RBP9.39□□□□□ -0.91
CPNE4-211ENST00000514439 VEGFAP15692 232 aaPredicted RBP9.39□□□□□ -0.91
CPNE4-211ENST00000514439 BTDP43251 543 aa9.39□□□□□ -0.91
CPNE4-211ENST00000514439 ARID5BQ14865 1188 aa9.39□□□□□ -0.91
CPNE4-211ENST00000514439 POSTNQ15063 836 aa9.39□□□□□ -0.91
CPNE4-211ENST00000514439 USP49Q70CQ1 688 aa9.39□□□□□ -0.91
CPNE4-211ENST00000514439 LRRC8AQ8IWT6 810 aa9.39□□□□□ -0.91
CPNE4-211ENST00000514439 PNMA1Q8ND90 353 aa9.39□□□□□ -0.91
CPNE4-211ENST00000514439 PODXL2Q9NZ53 605 aa9.39□□□□□ -0.91
CPNE4-211ENST00000514439 POLLQ9UGP5 575 aa9.39□□□□□ -0.91
CPNE4-211ENST00000514439 SAP30BPQ9UHR5 308 aaKnown RBP9.39□□□□□ -0.91
CPNE4-211ENST00000514439 SERTAD1Q9UHV2 236 aa9.39□□□□□ -0.91
CPNE4-211ENST00000514439 USP17L3A6NCW0 530 aa9.38□□□□□ -0.91
CPNE4-211ENST00000514439 USP17L4A6NCW7 530 aa9.38□□□□□ -0.91
CPNE4-211ENST00000514439 SMC2O95347 1197 aa9.38□□□□□ -0.91
CPNE4-211ENST00000514439 TSPY3P0CV98 308 aa9.38□□□□□ -0.91
CPNE4-211ENST00000514439 TSPY8P0CW00 308 aa9.38□□□□□ -0.91
CPNE4-211ENST00000514439 PLCD1P51178 756 aa9.38□□□□□ -0.91
CPNE4-211ENST00000514439 PFKFB3Q16875 520 aaPredicted RBP9.38□□□□□ -0.91
CPNE4-211ENST00000514439 MFSD14BQ5SR56 506 aa9.38□□□□□ -0.91
CPNE4-211ENST00000514439 USP17L1Q7RTZ2 530 aa9.38□□□□□ -0.91
CPNE4-211ENST00000514439 FILIP1Q7Z7B0 1213 aa9.38□□□□□ -0.91
CPNE4-211ENST00000514439 CERS3Q8IU89 383 aa9.38□□□□□ -0.91
CPNE4-211ENST00000514439 PDILTQ8N807 584 aa9.38□□□□□ -0.91
CPNE4-211ENST00000514439 TBC1D16Q8TBP0 767 aa9.38□□□□□ -0.91
CPNE4-211ENST00000514439 ANKS1AQ92625 1134 aa9.38□□□□□ -0.91
CPNE4-211ENST00000514439 CRAMP1Q96RY5 1269 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms