RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 SMC3Q9UQE7 1217 aa8.54□□□□□ -1.04
CLIP1-205ENST00000514271 FIBPO43427 364 aa8.53□□□□□ -1.04
CLIP1-205ENST00000514271 ECE2O60344 883 aa8.53□□□□□ -1.04
CLIP1-205ENST00000514271 GSDMDP57764 484 aa8.53□□□□□ -1.04
CLIP1-205ENST00000514271 MKRN3Q13064 507 aaKnown RBP8.53□□□□□ -1.04
CLIP1-205ENST00000514271 ADALQ6DHV7 355 aa8.53□□□□□ -1.04
CLIP1-205ENST00000514271 ZNF662Q6ZS27 426 aa8.53□□□□□ -1.04
CLIP1-205ENST00000514271 USP50Q70EL3 339 aaPredicted RBP8.53□□□□□ -1.04
CLIP1-205ENST00000514271 LINC00301Q8NCQ3 95 aa8.53□□□□□ -1.04
CLIP1-205ENST00000514271 ZC3H15Q8WU90 426 aaKnown RBP8.53□□□□□ -1.04
CLIP1-205ENST00000514271 PAGR1Q9BTK6 254 aa8.53□□□□□ -1.04
CLIP1-205ENST00000514271 CYP46A1Q9Y6A2 500 aa8.53□□□□□ -1.04
CLIP1-205ENST00000514271 ARID4AP29374 1257 aaPredicted RBP8.53□□□□□ -1.04
CLIP1-205ENST00000514271 ANKRD1Q15327 319 aa8.53□□□□□ -1.04
CLIP1-205ENST00000514271 TTF1Q15361 905 aaPredicted RBP8.53□□□□□ -1.04
CLIP1-205ENST00000514271 BEND6Q5SZJ8 279 aaPredicted RBP8.53□□□□□ -1.04
CLIP1-205ENST00000514271 SMARCE1Q969G3 411 aa8.53□□□□□ -1.04
CLIP1-205ENST00000514271 DNAI1Q9UI46 699 aa8.53□□□□□ -1.04
CLIP1-205ENST00000514271 PITPNM2Q9BZ72 1349 aa8.53□□□□□ -1.04
CLIP1-205ENST00000514271 JAK2O60674 1132 aa8.53□□□□□ -1.04
CLIP1-205ENST00000514271 CYP21A2P08686 494 aa8.53□□□□□ -1.04
CLIP1-205ENST00000514271 VPS37DQ86XT2 251 aa8.53□□□□□ -1.04
CLIP1-205ENST00000514271 NECAB1Q8N987 351 aa8.53□□□□□ -1.04
CLIP1-205ENST00000514271 CCDC112Q8NEF3 446 aa8.53□□□□□ -1.04
CLIP1-205ENST00000514271 NKX2-3Q8TAU0 364 aa8.53□□□□□ -1.04
CLIP1-205ENST00000514271 CD209Q9NNX6 404 aa8.53□□□□□ -1.04
CLIP1-205ENST00000514271 PSEN1P49768 467 aa8.52□□□□□ -1.05
CLIP1-205ENST00000514271 ETF1P62495 437 aaKnown RBP8.52□□□□□ -1.05
CLIP1-205ENST00000514271 GSTO1P78417 241 aa8.52□□□□□ -1.05
CLIP1-205ENST00000514271 RASSF7Q02833 373 aa8.52□□□□□ -1.05
CLIP1-205ENST00000514271 TNNI3KQ59H18 835 aa8.52□□□□□ -1.05
CLIP1-205ENST00000514271 RSBN1LQ6PCB5 846 aaPredicted RBP8.52□□□□□ -1.05
CLIP1-205ENST00000514271 VSTM4Q8IW00 320 aa8.52□□□□□ -1.05
CLIP1-205ENST00000514271 EXOC4Q96A65 974 aa8.52□□□□□ -1.05
CLIP1-205ENST00000514271 ZNF274Q96GC6 653 aaPredicted RBP8.52□□□□□ -1.05
CLIP1-205ENST00000514271 FPGT-TNNI3KV9GXZ4 949 aa8.52□□□□□ -1.05
CLIP1-205ENST00000514271 SKILP12757 684 aa8.52□□□□□ -1.05
CLIP1-205ENST00000514271 PDCP20941 246 aa8.52□□□□□ -1.05
CLIP1-205ENST00000514271 ZNF280AP59817 542 aaPredicted RBP8.52□□□□□ -1.05
CLIP1-205ENST00000514271 SWT1Q5T5J6 900 aaKnown RBP8.52□□□□□ -1.05
CLIP1-205ENST00000514271 FOXP4Q8IVH2 680 aaPredicted RBP8.52□□□□□ -1.05
CLIP1-205ENST00000514271 JAKMIP1Q96N16 626 aaKnown RBP8.52□□□□□ -1.05
CLIP1-205ENST00000514271 TNMDQ9H2S6 317 aa8.52□□□□□ -1.05
CLIP1-205ENST00000514271 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.52□□□□□ -1.05
CLIP1-205ENST00000514271 GEMIN8Q9NWZ8 242 aaKnown RBP8.52□□□□□ -1.05
CLIP1-205ENST00000514271 ERCC6LQ2NKX8 1250 aa8.52□□□□□ -1.05
CLIP1-205ENST00000514271 SUGP1Q8IWZ8 645 aaKnown RBP8.52□□□□□ -1.05
CLIP1-205ENST00000514271 TC2NQ8N9U0 490 aa8.52□□□□□ -1.05
CLIP1-205ENST00000514271 HAUS7Q99871 368 aa8.52□□□□□ -1.05
CLIP1-205ENST00000514271 ZNF277Q9NRM2 450 aaPredicted RBP8.52□□□□□ -1.05
CLIP1-205ENST00000514271 HACL1Q9UJ83 578 aa8.52□□□□□ -1.05
CLIP1-205ENST00000514271 PPP2R3BQ9Y5P8 575 aa8.52□□□□□ -1.05
CLIP1-205ENST00000514271 COL2A1P02458 1487 aaPredicted RBP8.51□□□□□ -1.05
CLIP1-205ENST00000514271 LDHCP07864 332 aa8.51□□□□□ -1.05
CLIP1-205ENST00000514271 VEGFAP15692 232 aaPredicted RBP8.51□□□□□ -1.05
CLIP1-205ENST00000514271 FSTL1Q12841 308 aa8.51□□□□□ -1.05
CLIP1-205ENST00000514271 BMS1Q14692 1282 aaKnown RBP8.51□□□□□ -1.05
CLIP1-205ENST00000514271 AOC3Q16853 763 aa8.51□□□□□ -1.05
CLIP1-205ENST00000514271 LRRC24Q50LG9 513 aa8.51□□□□□ -1.05
CLIP1-205ENST00000514271 SRLQ86TD4 932 aa8.51□□□□□ -1.05
CLIP1-205ENST00000514271 CCDC150Q8NCX0 1101 aa8.51□□□□□ -1.05
CLIP1-205ENST00000514271 USP28Q96RU2 1077 aa8.51□□□□□ -1.05
CLIP1-205ENST00000514271 ADARB2Q9NS39 739 aaKnown RBP8.51□□□□□ -1.05
CLIP1-205ENST00000514271 CALCOCO1Q9P1Z2 691 aa8.51□□□□□ -1.05
CLIP1-205ENST00000514271 KIAA1468Q9P260 1216 aa8.51□□□□□ -1.05
CLIP1-205ENST00000514271 PCDHA7Q9UN72 937 aa8.51□□□□□ -1.05
CLIP1-205ENST00000514271 GREB1LQ9C091 1923 aaPredicted RBP8.51□□□□□ -1.05
CLIP1-205ENST00000514271 H7C1D1 291 aa8.51□□□□□ -1.05
CLIP1-205ENST00000514271 HIP1O00291 1037 aa8.51□□□□□ -1.05
CLIP1-205ENST00000514271 DPCR1Q3MIW9 517 aa8.51□□□□□ -1.05
CLIP1-205ENST00000514271 SPC24Q8NBT2 197 aa8.51□□□□□ -1.05
CLIP1-205ENST00000514271 FBXO18Q8NFZ0 1043 aa8.51□□□□□ -1.05
CLIP1-205ENST00000514271 RBM46Q8TBY0 533 aaKnown RBP8.51□□□□□ -1.05
CLIP1-205ENST00000514271 HOOK2Q96ED9 719 aa8.51□□□□□ -1.05
CLIP1-205ENST00000514271 ZNF594Q96JF6 807 aaPredicted RBP8.51□□□□□ -1.05
CLIP1-205ENST00000514271 SRRTQ9BXP5 876 aaKnown RBP8.51□□□□□ -1.05
CLIP1-205ENST00000514271 TSPYL1Q9H0U9 437 aa8.51□□□□□ -1.05
CLIP1-205ENST00000514271 L1RE1Q9UN81 338 aa8.51□□□□□ -1.05
CLIP1-205ENST00000514271 ZMYM6O95789 1325 aa8.51□□□□□ -1.05
CLIP1-205ENST00000514271 A0A1B0GUL7 405 aa8.5□□□□□ -1.05
CLIP1-205ENST00000514271 UNCXA6NJT0 531 aa8.5□□□□□ -1.05
CLIP1-205ENST00000514271 VASPP50552 380 aaPredicted RBP8.5□□□□□ -1.05
CLIP1-205ENST00000514271 DHX8Q14562 1220 aaKnown RBP8.5□□□□□ -1.05
CLIP1-205ENST00000514271 GORABQ5T7V8 394 aa8.5□□□□□ -1.05
CLIP1-205ENST00000514271 CWC27Q6UX04 472 aaKnown RBP8.5□□□□□ -1.05
CLIP1-205ENST00000514271 FAM84BQ96KN1 310 aaPredicted RBP8.5□□□□□ -1.05
CLIP1-205ENST00000514271 DSCC1Q9BVC3 393 aa8.5□□□□□ -1.05
CLIP1-205ENST00000514271 FTOQ9C0B1 505 aaKnown RBP eCLIP8.5□□□□□ -1.05
CLIP1-205ENST00000514271 IL1RAPL2Q9NP60 686 aa8.5□□□□□ -1.05
CLIP1-205ENST00000514271 YY1P25490 414 aa8.5□□□□□ -1.05
CLIP1-205ENST00000514271 CCDC85AQ96PX6 553 aaPredicted RBP8.5□□□□□ -1.05
CLIP1-205ENST00000514271 V9GYY5 206 aaPredicted RBP8.5□□□□□ -1.05
CLIP1-205ENST00000514271 YEATS4O95619 227 aa8.5□□□□□ -1.05
CLIP1-205ENST00000514271 NLRP12P59046 1061 aa8.5□□□□□ -1.05
CLIP1-205ENST00000514271 TFCP2Q12800 502 aa8.5□□□□□ -1.05
CLIP1-205ENST00000514271 IRF5Q13568 498 aa8.5□□□□□ -1.05
CLIP1-205ENST00000514271 DACT2Q5SW24 774 aa8.5□□□□□ -1.05
CLIP1-205ENST00000514271 FKBP1CQ5VVH2 108 aa8.5□□□□□ -1.05
CLIP1-205ENST00000514271 LARP6Q9BRS8 491 aaKnown RBP8.5□□□□□ -1.05
CLIP1-205ENST00000514271 PUS3Q9BZE2 481 aaKnown RBP8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms