RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 PDE4BQ07343 736 aa10.92□□□□□ -0.66
VCAN-210ENST00000513960 RIN2Q8WYP3 895 aaPredicted RBP10.92□□□□□ -0.66
VCAN-210ENST00000513960 STAMQ92783 540 aa10.92□□□□□ -0.66
VCAN-210ENST00000513960 SLF1Q9BQI6 1058 aa10.92□□□□□ -0.66
VCAN-210ENST00000513960 CDC23Q9UJX2 597 aa10.92□□□□□ -0.66
VCAN-210ENST00000513960 DENND2AQ9ULE3 1009 aa10.92□□□□□ -0.66
VCAN-210ENST00000513960 SLC12A7Q9Y666 1083 aa10.92□□□□□ -0.66
VCAN-210ENST00000513960 RNF40O75150 1001 aa10.92□□□□□ -0.66
VCAN-210ENST00000513960 ATP6V1AP38606 617 aa10.92□□□□□ -0.66
VCAN-210ENST00000513960 MAGEA9P43362 315 aa10.92□□□□□ -0.66
VCAN-210ENST00000513960 CCDC152Q4G0S7 254 aa10.92□□□□□ -0.66
VCAN-210ENST00000513960 IFNL3Q8IZI9 196 aa10.92□□□□□ -0.66
VCAN-210ENST00000513960 TOGARAM1Q9Y4F4 1720 aa10.92□□□□□ -0.66
VCAN-210ENST00000513960 SHANK3Q9BYB0 1731 aa10.91□□□□□ -0.66
VCAN-210ENST00000513960 CCT5P48643 541 aa10.91□□□□□ -0.66
VCAN-210ENST00000513960 SUSD4Q5VX71 490 aa10.91□□□□□ -0.66
VCAN-210ENST00000513960 KRT40Q6A162 431 aa10.91□□□□□ -0.66
VCAN-210ENST00000513960 GPIHBP1Q8IV16 184 aa10.91□□□□□ -0.66
VCAN-210ENST00000513960 GSPT2Q8IYD1 628 aaKnown RBP10.91□□□□□ -0.66
VCAN-210ENST00000513960 CCDC87Q9NVE4 849 aa10.91□□□□□ -0.66
VCAN-210ENST00000513960 LRP2BPQ9P2M1 347 aa10.91□□□□□ -0.66
VCAN-210ENST00000513960 SERTAD1Q9UHV2 236 aa10.91□□□□□ -0.66
VCAN-210ENST00000513960 ERICH2A1L162 156 aa10.91□□□□□ -0.66
VCAN-210ENST00000513960 MFSD6Q6ZSS7 791 aa10.91□□□□□ -0.66
VCAN-210ENST00000513960 NUP133Q8WUM0 1156 aa10.91□□□□□ -0.66
VCAN-210ENST00000513960 NAPGQ99747 312 aaPredicted RBP10.91□□□□□ -0.66
VCAN-210ENST00000513960 CNNM2Q9H8M5 875 aa10.91□□□□□ -0.66
VCAN-210ENST00000513960 ARMT1Q9H993 441 aa10.91□□□□□ -0.66
VCAN-210ENST00000513960 SNAP23O00161 211 aa10.91□□□□□ -0.66
VCAN-210ENST00000513960 N4BP3O15049 544 aa10.91□□□□□ -0.66
VCAN-210ENST00000513960 RASGRF1Q13972 1273 aa10.91□□□□□ -0.66
VCAN-210ENST00000513960 BPIFA3Q9BQP9 254 aa10.91□□□□□ -0.66
VCAN-210ENST00000513960 NBPF3Q9H094 633 aa10.91□□□□□ -0.66
VCAN-210ENST00000513960 FAM107BQ9H098 131 aa10.91□□□□□ -0.66
VCAN-210ENST00000513960 TEX33O43247 280 aa10.9□□□□□ -0.66
VCAN-210ENST00000513960 FGFR2P21802 821 aa10.9□□□□□ -0.66
VCAN-210ENST00000513960 CTDSPL2Q05D32 466 aa10.9□□□□□ -0.66
VCAN-210ENST00000513960 RBL2Q08999 1139 aa10.9□□□□□ -0.66
VCAN-210ENST00000513960 ALX1Q15699 326 aa10.9□□□□□ -0.66
VCAN-210ENST00000513960 DDB1Q16531 1140 aa10.9□□□□□ -0.66
VCAN-210ENST00000513960 PARP10Q53GL7 1025 aa10.9□□□□□ -0.66
VCAN-210ENST00000513960 FCHSD1Q86WN1 690 aa10.9□□□□□ -0.66
VCAN-210ENST00000513960 SMYD4Q8IYR2 804 aaPredicted RBP10.9□□□□□ -0.66
VCAN-210ENST00000513960 ACSBG1Q96GR2 724 aa10.9□□□□□ -0.66
VCAN-210ENST00000513960 MYCBPQ99417 103 aaPredicted RBP10.9□□□□□ -0.66
VCAN-210ENST00000513960 KRT23Q9C075 422 aa10.9□□□□□ -0.66
VCAN-210ENST00000513960 VPS16Q9H269 839 aa10.9□□□□□ -0.66
VCAN-210ENST00000513960 SEC31BQ9NQW1 1179 aa10.9□□□□□ -0.66
VCAN-210ENST00000513960 KCNJ6P48051 423 aa10.9□□□□□ -0.66
VCAN-210ENST00000513960 DNA2P51530 1060 aa10.9□□□□□ -0.66
VCAN-210ENST00000513960 EIF5P55010 431 aaKnown RBP10.9□□□□□ -0.66
VCAN-210ENST00000513960 SSRP1Q08945 709 aaKnown RBP10.9□□□□□ -0.66
VCAN-210ENST00000513960 NUTM2AQ8IVF1 878 aaPredicted RBP10.9□□□□□ -0.66
VCAN-210ENST00000513960 NIP7Q9Y221 180 aaKnown RBP eCLIP10.9□□□□□ -0.66
VCAN-210ENST00000513960 NEDD4P46934 1319 aa10.9□□□□□ -0.66
VCAN-210ENST00000513960 SHTN1A0MZ66 631 aa10.9□□□□□ -0.67
VCAN-210ENST00000513960 IPO7O95373 1038 aaKnown RBP10.9□□□□□ -0.67
VCAN-210ENST00000513960 CASP1P29466 404 aa10.9□□□□□ -0.67
VCAN-210ENST00000513960 CDC27P30260 824 aa10.9□□□□□ -0.67
VCAN-210ENST00000513960 MRPS25P82663 173 aaKnown RBP10.9□□□□□ -0.67
VCAN-210ENST00000513960 SLC39A14Q15043 492 aa10.9□□□□□ -0.67
VCAN-210ENST00000513960 POSTNQ15063 836 aa10.9□□□□□ -0.67
VCAN-210ENST00000513960 SHC4Q6S5L8 630 aa10.9□□□□□ -0.67
VCAN-210ENST00000513960 KIAA1328Q86T90 577 aa10.9□□□□□ -0.67
VCAN-210ENST00000513960 TC2NQ8N9U0 490 aa10.9□□□□□ -0.67
VCAN-210ENST00000513960 ANKRD20A12PQ8NF67 263 aa10.9□□□□□ -0.67
VCAN-210ENST00000513960 WASF1Q92558 559 aa10.9□□□□□ -0.67
VCAN-210ENST00000513960 SLC4A4Q9Y6R1 1079 aa10.9□□□□□ -0.67
VCAN-210ENST00000513960 ATRNO75882 1429 aa10.89□□□□□ -0.67
VCAN-210ENST00000513960 TCRBV5S4A2TA0A5A2 114 aa10.89□□□□□ -0.67
VCAN-210ENST00000513960 EBAG9O00559 213 aa10.89□□□□□ -0.67
VCAN-210ENST00000513960 ERLIN2O94905 339 aa10.89□□□□□ -0.67
VCAN-210ENST00000513960 GNAT2P19087 354 aa10.89□□□□□ -0.67
VCAN-210ENST00000513960 CASP14P31944 242 aa10.89□□□□□ -0.67
VCAN-210ENST00000513960 NOP2P46087 812 aaKnown RBP10.89□□□□□ -0.67
VCAN-210ENST00000513960 FMR1Q06787 632 aaKnown RBP eCLIP10.89□□□□□ -0.67
VCAN-210ENST00000513960 CCDC70Q6NSX1 233 aa10.89□□□□□ -0.67
VCAN-210ENST00000513960 RSRC2Q7L4I2 434 aaKnown RBP10.89□□□□□ -0.67
VCAN-210ENST00000513960 TRIM22Q8IYM9 498 aa10.89□□□□□ -0.67
VCAN-210ENST00000513960 INCENPQ9NQS7 918 aa10.89□□□□□ -0.67
VCAN-210ENST00000513960 ZSWIM5Q9P217 1185 aa10.89□□□□□ -0.67
VCAN-210ENST00000513960 MKRN1Q9UHC7 482 aaKnown RBP10.89□□□□□ -0.67
VCAN-210ENST00000513960 KCNJ14Q9UNX9 436 aa10.89□□□□□ -0.67
VCAN-210ENST00000513960 KIAA0754O94854 1291 aa10.89□□□□□ -0.67
VCAN-210ENST00000513960 PRR29P0C7W0 189 aa10.89□□□□□ -0.67
VCAN-210ENST00000513960 CRKLP46109 303 aaKnown RBP10.89□□□□□ -0.67
VCAN-210ENST00000513960 AKNAD1Q5T1N1 836 aa10.89□□□□□ -0.67
VCAN-210ENST00000513960 FAM71BQ8TC56 605 aa10.89□□□□□ -0.67
VCAN-210ENST00000513960 IGDCC4Q8TDY8 1250 aa10.89□□□□□ -0.67
VCAN-210ENST00000513960 CDCA7Q9BWT1 371 aaPredicted RBP10.89□□□□□ -0.67
VCAN-210ENST00000513960 MAPK8IP1Q9UQF2 711 aa10.89□□□□□ -0.67
VCAN-210ENST00000513960 SAMM50Q9Y512 469 aa10.89□□□□□ -0.67
VCAN-210ENST00000513960 ABCA3Q99758 1704 aa10.89□□□□□ -0.67
VCAN-210ENST00000513960 BCAMP50895 628 aa10.89□□□□□ -0.67
VCAN-210ENST00000513960 BEND6Q5SZJ8 279 aaPredicted RBP10.89□□□□□ -0.67
VCAN-210ENST00000513960 METTL16Q86W50 562 aaKnown RBP10.89□□□□□ -0.67
VCAN-210ENST00000513960 KRI1Q8N9T8 703 aaKnown RBP10.89□□□□□ -0.67
VCAN-210ENST00000513960 LY9Q9HBG7 655 aa10.89□□□□□ -0.67
VCAN-210ENST00000513960 SENP2Q9HC62 589 aa10.89□□□□□ -0.67
VCAN-210ENST00000513960 KCND1Q9NSA2 647 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms