RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 KDM7AQ6ZMT4 941 aa13.46□□□□□ -0.25
LIMCH1-213ENST00000511496 SYCP3Q8IZU3 236 aa13.46□□□□□ -0.25
LIMCH1-213ENST00000511496 SSH3Q8TE77 659 aa13.46□□□□□ -0.25
LIMCH1-213ENST00000511496 CCDC43Q96MW1 224 aaKnown RBP13.46□□□□□ -0.25
LIMCH1-213ENST00000511496 USP44Q9H0E7 712 aa13.46□□□□□ -0.25
LIMCH1-213ENST00000511496 ECHDC1Q9NTX5 307 aa13.46□□□□□ -0.25
LIMCH1-213ENST00000511496 UNC13BO14795 1591 aa13.46□□□□□ -0.25
LIMCH1-213ENST00000511496 UGGT1Q9NYU2 1555 aa13.46□□□□□ -0.25
LIMCH1-213ENST00000511496 SPHKAPQ2M3C7 1700 aa13.46□□□□□ -0.25
LIMCH1-213ENST00000511496 CHL1O00533 1208 aa13.46□□□□□ -0.25
LIMCH1-213ENST00000511496 ZSCAN9O15535 394 aaPredicted RBP13.46□□□□□ -0.25
LIMCH1-213ENST00000511496 IMPDH2P12268 514 aa13.46□□□□□ -0.25
LIMCH1-213ENST00000511496 BMP6P22004 513 aa13.46□□□□□ -0.25
LIMCH1-213ENST00000511496 FXR1P51114 621 aaKnown RBP eCLIP13.46□□□□□ -0.25
LIMCH1-213ENST00000511496 STX17P56962 302 aa13.46□□□□□ -0.25
LIMCH1-213ENST00000511496 CCDC63Q8NA47 563 aa13.46□□□□□ -0.25
LIMCH1-213ENST00000511496 RBM41Q96IZ5 413 aaKnown RBP13.46□□□□□ -0.25
LIMCH1-213ENST00000511496 LEMD3Q9Y2U8 911 aa13.46□□□□□ -0.25
LIMCH1-213ENST00000511496 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.46□□□□□ -0.25
LIMCH1-213ENST00000511496 CDC25AP30304 524 aa13.46□□□□□ -0.26
LIMCH1-213ENST00000511496 CKAP4Q07065 602 aaKnown RBP13.46□□□□□ -0.26
LIMCH1-213ENST00000511496 PPARAQ07869 468 aa13.46□□□□□ -0.26
LIMCH1-213ENST00000511496 FLIIQ13045 1269 aa13.46□□□□□ -0.26
LIMCH1-213ENST00000511496 NR1I3Q14994 352 aa13.46□□□□□ -0.26
LIMCH1-213ENST00000511496 BRAPQ7Z569 592 aa13.46□□□□□ -0.26
LIMCH1-213ENST00000511496 ZNF589Q86UQ0 364 aaPredicted RBP13.46□□□□□ -0.26
LIMCH1-213ENST00000511496 CACNA2D3Q8IZS8 1091 aa13.46□□□□□ -0.26
LIMCH1-213ENST00000511496 EVI5LQ96CN4 794 aa13.46□□□□□ -0.26
LIMCH1-213ENST00000511496 SEC16BQ96JE7 1060 aa13.46□□□□□ -0.26
LIMCH1-213ENST00000511496 PANK4Q9NVE7 773 aa13.46□□□□□ -0.26
LIMCH1-213ENST00000511496 DPPA5A6NC42 116 aa13.45□□□□□ -0.26
LIMCH1-213ENST00000511496 CMA1P23946 247 aa13.45□□□□□ -0.26
LIMCH1-213ENST00000511496 TEKT4Q8WW24 435 aa13.45□□□□□ -0.26
LIMCH1-213ENST00000511496 GORASP1Q9BQQ3 440 aa13.45□□□□□ -0.26
LIMCH1-213ENST00000511496 MROH7-TTC4A0A0A0MT08 1334 aa13.45□□□□□ -0.26
LIMCH1-213ENST00000511496 GMNCA6NCL1 334 aa13.45□□□□□ -0.26
LIMCH1-213ENST00000511496 MAGEA10P43363 369 aaPredicted RBP13.45□□□□□ -0.26
LIMCH1-213ENST00000511496 ERVK-24P63145 666 aa13.45□□□□□ -0.26
LIMCH1-213ENST00000511496 BLMHQ13867 455 aa13.45□□□□□ -0.26
LIMCH1-213ENST00000511496 MEX3CQ5U5Q3 659 aaKnown RBP13.45□□□□□ -0.26
LIMCH1-213ENST00000511496 ALS2CLQ60I27 953 aa13.45□□□□□ -0.26
LIMCH1-213ENST00000511496 KCNV2Q8TDN2 545 aa13.45□□□□□ -0.26
LIMCH1-213ENST00000511496 RBM33Q96EV2 1170 aaKnown RBP13.45□□□□□ -0.26
LIMCH1-213ENST00000511496 BOLA2Q9H3K6 86 aa13.45□□□□□ -0.26
LIMCH1-213ENST00000511496 MMADHCQ9H3L0 296 aaPredicted RBP13.45□□□□□ -0.26
LIMCH1-213ENST00000511496 NPHP4O75161 1426 aaPredicted RBP13.45□□□□□ -0.26
LIMCH1-213ENST00000511496 KIAA0556O60303 1618 aa13.45□□□□□ -0.26
LIMCH1-213ENST00000511496 MFAP3LO75121 409 aa13.45□□□□□ -0.26
LIMCH1-213ENST00000511496 MYL1P05976 194 aa13.45□□□□□ -0.26
LIMCH1-213ENST00000511496 EPB41P11171 864 aaKnown RBP13.45□□□□□ -0.26
LIMCH1-213ENST00000511496 CUL3Q13618 768 aa13.45□□□□□ -0.26
LIMCH1-213ENST00000511496 CHST3Q7LGC8 479 aa13.45□□□□□ -0.26
LIMCH1-213ENST00000511496 CPLX4Q7Z7G2 160 aa13.45□□□□□ -0.26
LIMCH1-213ENST00000511496 NUTM2AQ8IVF1 878 aaPredicted RBP13.45□□□□□ -0.26
LIMCH1-213ENST00000511496 USHBP1Q8N6Y0 703 aa13.45□□□□□ -0.26
LIMCH1-213ENST00000511496 PNPLA6Q8IY17 1366 aa13.45□□□□□ -0.26
LIMCH1-213ENST00000511496 EVI5O60447 810 aa13.44□□□□□ -0.26
LIMCH1-213ENST00000511496 GCLCP48506 637 aaPredicted RBP13.44□□□□□ -0.26
LIMCH1-213ENST00000511496 ZBED6P86452 979 aa13.44□□□□□ -0.26
LIMCH1-213ENST00000511496 MAP3K12Q12852 859 aa13.44□□□□□ -0.26
LIMCH1-213ENST00000511496 POLA2Q14181 598 aa13.44□□□□□ -0.26
LIMCH1-213ENST00000511496 PDIA5Q14554 519 aa13.44□□□□□ -0.26
LIMCH1-213ENST00000511496 CCDC122Q5T0U0 273 aa13.44□□□□□ -0.26
LIMCH1-213ENST00000511496 MAATS1Q7Z4T9 603 aa13.44□□□□□ -0.26
LIMCH1-213ENST00000511496 TRIM42Q8IWZ5 723 aa13.44□□□□□ -0.26
LIMCH1-213ENST00000511496 PSMB7Q99436 277 aa13.44□□□□□ -0.26
LIMCH1-213ENST00000511496 NUP88Q99567 741 aaPredicted RBP13.44□□□□□ -0.26
LIMCH1-213ENST00000511496 YIPF2Q9BWQ6 316 aa13.44□□□□□ -0.26
LIMCH1-213ENST00000511496 TSPYL4Q9UJ04 414 aa13.44□□□□□ -0.26
LIMCH1-213ENST00000511496 WWC3Q9ULE0 1092 aa13.44□□□□□ -0.26
LIMCH1-213ENST00000511496 GLI2P10070 1586 aa13.44□□□□□ -0.26
LIMCH1-213ENST00000511496 MAST1Q9Y2H9 1570 aa13.44□□□□□ -0.26
LIMCH1-213ENST00000511496 TMOD1P28289 359 aa13.44□□□□□ -0.26
LIMCH1-213ENST00000511496 ABL2P42684 1182 aa13.44□□□□□ -0.26
LIMCH1-213ENST00000511496 HSP90AB4PQ58FF6 505 aa13.44□□□□□ -0.26
LIMCH1-213ENST00000511496 ARL10Q8N8L6 244 aa13.44□□□□□ -0.26
LIMCH1-213ENST00000511496 GPATCH3Q96I76 525 aa13.44□□□□□ -0.26
LIMCH1-213ENST00000511496 TBC1D2BQ9UPU7 963 aa13.44□□□□□ -0.26
LIMCH1-213ENST00000511496 LRRD1A4D1F6 860 aa13.44□□□□□ -0.26
LIMCH1-213ENST00000511496 TPD52L2O43399 206 aaKnown RBP13.44□□□□□ -0.26
LIMCH1-213ENST00000511496 KIF5BP33176 963 aa13.44□□□□□ -0.26
LIMCH1-213ENST00000511496 ODF2Q5BJF6 829 aa13.44□□□□□ -0.26
LIMCH1-213ENST00000511496 CCDC102BQ68D86 513 aa13.44□□□□□ -0.26
LIMCH1-213ENST00000511496 METTL16Q86W50 562 aaKnown RBP13.44□□□□□ -0.26
LIMCH1-213ENST00000511496 IFT81Q8WYA0 676 aa13.44□□□□□ -0.26
LIMCH1-213ENST00000511496 C2CD2Q9Y426 696 aa13.44□□□□□ -0.26
LIMCH1-213ENST00000511496 MINK1Q8N4C8 1332 aaPredicted RBP13.43□□□□□ -0.26
LIMCH1-213ENST00000511496 CARMIL2Q6F5E8 1435 aa13.43□□□□□ -0.26
LIMCH1-213ENST00000511496 SPDYE5A6NIY4 337 aa13.43□□□□□ -0.26
LIMCH1-213ENST00000511496 ATP6V1G1O75348 118 aa13.43□□□□□ -0.26
LIMCH1-213ENST00000511496 GUCY2FP51841 1108 aa13.43□□□□□ -0.26
LIMCH1-213ENST00000511496 ENOX2Q16206 610 aaKnown RBP13.43□□□□□ -0.26
LIMCH1-213ENST00000511496 HDGFL2Q7Z4V5 671 aaPredicted RBP13.43□□□□□ -0.26
LIMCH1-213ENST00000511496 TMTC1Q8IUR5 882 aa13.43□□□□□ -0.26
LIMCH1-213ENST00000511496 ZNF233A6NK53 670 aa13.43□□□□□ -0.26
LIMCH1-213ENST00000511496 MAP3K13O43283 966 aa13.43□□□□□ -0.26
LIMCH1-213ENST00000511496 YEATS4O95619 227 aa13.43□□□□□ -0.26
LIMCH1-213ENST00000511496 IL13P35225 146 aa13.43□□□□□ -0.26
LIMCH1-213ENST00000511496 TAF11Q15544 211 aa13.43□□□□□ -0.26
LIMCH1-213ENST00000511496 SLC9C2Q5TAH2 1124 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms