RNA–Protein interactions for RNA: ENST00000508871.5

NEDD4-209, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 5,707 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-209ENST00000508871 DDX42Q86XP3 938 aaKnown RBP eCLIP4.47□□□□□ -1.699e-8■■■■■ 81.4
NEDD4-209ENST00000508871 CCDC191Q8NCU4 936 aa4.47□□□□□ -1.69
NEDD4-209ENST00000508871 EVI5LQ96CN4 794 aa4.47□□□□□ -1.69
NEDD4-209ENST00000508871 RMI1Q9H9A7 625 aa4.47□□□□□ -1.69
NEDD4-209ENST00000508871 ZMIZ1Q9ULJ6 1067 aa4.47□□□□□ -1.69
NEDD4-209ENST00000508871 TSPAN6O43657 245 aa4.46□□□□□ -1.69
NEDD4-209ENST00000508871 FAM186BQ8IYM0 893 aa4.46□□□□□ -1.69
NEDD4-209ENST00000508871 UCN2Q96RP3 112 aa4.46□□□□□ -1.69
NEDD4-209ENST00000508871 CCDC87Q9NVE4 849 aa4.46□□□□□ -1.69
NEDD4-209ENST00000508871 SMAPO00193 183 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 SASH1O94885 1247 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 KCNA6P17658 529 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 CCT5P48643 541 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 RAB27AP51159 221 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 FXNQ16595 210 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 SEZ6Q53EL9 994 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 LMNTD2Q8IXW0 634 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 NME8Q8N427 588 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 SPATA5Q8NB90 893 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 TSEN2Q8NCE0 465 aaKnown RBP4.46□□□□□ -1.7
NEDD4-209ENST00000508871 ALG2Q9H553 416 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 SYNCQ9H7C4 482 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 LRFN1Q9P244 771 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 GPN3Q9UHW5 284 aaPredicted RBP4.46□□□□□ -1.7
NEDD4-209ENST00000508871 SBNO1A3KN83 1393 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 ZSCAN20P17040 1043 aaPredicted RBP4.46□□□□□ -1.7
NEDD4-209ENST00000508871 OSBPP22059 807 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 GNALP38405 381 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 HALP42357 657 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 UBXN1Q04323 297 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 TBC1D8BQ0IIM8 1120 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 TNNI3KQ59H18 835 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 TTLL7Q6ZT98 887 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 SRLQ86TD4 932 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 NIM1KQ8IY84 436 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 SENP7Q9BQF6 1050 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 PDCL3Q9H2J4 239 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 SLC12A5Q9H2X9 1139 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 PAPPAQ13219 1627 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 LAMB4A4D0S4 1761 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 B3GALNT1O75752 331 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 RNASEH2AO75792 299 aaKnown RBP4.46□□□□□ -1.7
NEDD4-209ENST00000508871 DNAJB2P25686 324 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 LRRC41Q15345 812 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 SEPT7Q16181 437 aaKnown RBP4.46□□□□□ -1.7
NEDD4-209ENST00000508871 USHBP1Q8N6Y0 703 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 CERKQ8TCT0 537 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 ACSBG1Q96GR2 724 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 MYD88Q99836 296 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 ZNF408Q9H9D4 720 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 STK26Q9P289 416 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 CD2APQ9Y5K6 639 aa4.46□□□□□ -1.7
NEDD4-209ENST00000508871 ARHGEF37A1IGU5 675 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 SART1O43290 800 aaKnown RBP4.45□□□□□ -1.7
NEDD4-209ENST00000508871 PSMC4P43686 418 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 TIGD6Q17RP2 521 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 SV2CQ496J9 727 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 ACBD5Q5T8D3 534 aaPredicted RBP4.45□□□□□ -1.7
NEDD4-209ENST00000508871 TCERG1LQ5VWI1 586 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 IFNL2Q8IZJ0 200 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 SERBP1Q8NC51 408 aaKnown RBP eCLIP4.45□□□□□ -1.7
NEDD4-209ENST00000508871 SLTMQ9NWH9 1034 aaKnown RBP eCLIP4.45□□□□□ -1.7
NEDD4-209ENST00000508871 EIF2AK3Q9NZJ5 1116 aaKnown RBP4.45□□□□□ -1.7
NEDD4-209ENST00000508871 GOLGA6L4A6NEF3 574 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 FBXO45P0C2W1 286 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 YY1P25490 414 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 ZNF746Q6NUN9 644 aaPredicted RBP4.45□□□□□ -1.7
NEDD4-209ENST00000508871 ELMSAN1Q6PJG2 1045 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 DTHD1Q6ZMT9 781 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 TAGAPQ8N103 731 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 C8orf48Q96LL4 319 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 PLEKHF1Q96S99 279 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 RABEP2Q9H5N1 569 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 CAAP1Q9H8G2 361 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 RRN3Q9NYV6 651 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 FRMD4AQ9P2Q2 1039 aaPredicted RBP4.45□□□□□ -1.7
NEDD4-209ENST00000508871 SYCE3A1L190 88 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 COBLO75128 1261 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 PDHA1P08559 390 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 HPDP32754 393 aaPredicted RBP4.45□□□□□ -1.7
NEDD4-209ENST00000508871 SLFN5Q08AF3 891 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 NBPF14Q5TI25 921 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 NLGN1Q8N2Q7 840 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 COG3Q96JB2 828 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 AATFQ9NY61 560 aaKnown RBP eCLIP4.45□□□□□ -1.7
NEDD4-209ENST00000508871 CXXC1Q9P0U4 656 aaPredicted RBP4.45□□□□□ -1.7
NEDD4-209ENST00000508871 TRPC6Q9Y210 931 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 AHDC1Q5TGY3 1603 aaPredicted RBP4.45□□□□□ -1.7
NEDD4-209ENST00000508871 DIAPH2O60879 1101 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 AIMP1Q12904 312 aaKnown RBP4.45□□□□□ -1.7
NEDD4-209ENST00000508871 EDEM1Q92611 657 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 SLC5A4Q9NY91 659 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 ADAMTS8Q9UP79 889 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 LRRC10BA6NIK2 292 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 SMAD7O15105 426 aaKnown RBP4.45□□□□□ -1.7
NEDD4-209ENST00000508871 SMARCA1P28370 1054 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 CAMK2BQ13554 666 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 C16orf46Q6P387 395 aa4.45□□□□□ -1.7
NEDD4-209ENST00000508871 UBE2R2Q712K3 238 aaPredicted RBP4.45□□□□□ -1.7
NEDD4-209ENST00000508871 CPLX4Q7Z7G2 160 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms