RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 SIRT2Q8IXJ6 389 aa9.74□□□□□ -0.85
SCN1A-207ENST00000507401 TEX11Q8IYF3 940 aa9.74□□□□□ -0.85
SCN1A-207ENST00000507401 CLASRPQ8N2M8 674 aaKnown RBP9.74□□□□□ -0.85
SCN1A-207ENST00000507401 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.74□□□□□ -0.85
SCN1A-207ENST00000507401 KIF1BPQ96EK5 621 aa9.74□□□□□ -0.85
SCN1A-207ENST00000507401 OSBPL5Q9H0X9 879 aaPredicted RBP9.74□□□□□ -0.85
SCN1A-207ENST00000507401 EFCC1Q9HA90 598 aa9.74□□□□□ -0.85
SCN1A-207ENST00000507401 PI4KBQ9UBF8 816 aa9.74□□□□□ -0.85
SCN1A-207ENST00000507401 HERC5Q9UII4 1024 aaKnown RBP9.74□□□□□ -0.85
SCN1A-207ENST00000507401 PTPN22Q9Y2R2 807 aa9.74□□□□□ -0.85
SCN1A-207ENST00000507401 AFG3L2Q9Y4W6 797 aa9.74□□□□□ -0.85
SCN1A-207ENST00000507401 TRIM17Q9Y577 477 aa9.74□□□□□ -0.85
SCN1A-207ENST00000507401 ZHX2Q9Y6X8 837 aa9.74□□□□□ -0.85
SCN1A-207ENST00000507401 SMAPO00193 183 aa9.73□□□□□ -0.85
SCN1A-207ENST00000507401 MOGSQ13724 837 aa9.73□□□□□ -0.85
SCN1A-207ENST00000507401 TTF1Q15361 905 aaPredicted RBP9.73□□□□□ -0.85
SCN1A-207ENST00000507401 C17orf99Q6UX52 265 aa9.73□□□□□ -0.85
SCN1A-207ENST00000507401 AACSQ86V21 672 aa9.73□□□□□ -0.85
SCN1A-207ENST00000507401 METTL16Q86W50 562 aaKnown RBP9.73□□□□□ -0.85
SCN1A-207ENST00000507401 CD99L2Q8TCZ2 262 aa9.73□□□□□ -0.85
SCN1A-207ENST00000507401 SH3RF3Q8TEJ3 882 aaPredicted RBP9.73□□□□□ -0.85
SCN1A-207ENST00000507401 TBC1D2Q9BYX2 928 aa9.73□□□□□ -0.85
SCN1A-207ENST00000507401 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.73□□□□□ -0.85
SCN1A-207ENST00000507401 PIH1D3Q9NQM4 214 aaKnown RBP9.73□□□□□ -0.85
SCN1A-207ENST00000507401 AATFQ9NY61 560 aaKnown RBP eCLIP9.73□□□□□ -0.85
SCN1A-207ENST00000507401 TLR7Q9NYK1 1049 aaKnown RBP9.73□□□□□ -0.85
SCN1A-207ENST00000507401 SLC45A1Q9Y2W3 748 aa9.73□□□□□ -0.85
SCN1A-207ENST00000507401 DOCK2Q92608 1830 aa9.72□□□□□ -0.85
SCN1A-207ENST00000507401 A0A0G2JLL6 359 aaPredicted RBP9.72□□□□□ -0.85
SCN1A-207ENST00000507401 PDHXO00330 501 aa9.72□□□□□ -0.85
SCN1A-207ENST00000507401 PRMT2P55345 433 aa9.72□□□□□ -0.85
SCN1A-207ENST00000507401 MAP3K12Q12852 859 aa9.72□□□□□ -0.85
SCN1A-207ENST00000507401 KIF22Q14807 665 aa9.72□□□□□ -0.85
SCN1A-207ENST00000507401 PRRT2Q7Z6L0 340 aaPredicted RBP9.72□□□□□ -0.85
SCN1A-207ENST00000507401 TATDN2Q93075 761 aa9.72□□□□□ -0.85
SCN1A-207ENST00000507401 GINM1Q9NU53 330 aa9.72□□□□□ -0.85
SCN1A-207ENST00000507401 IDH1O75874 414 aaKnown RBP9.71□□□□□ -0.86
SCN1A-207ENST00000507401 IFIT2P09913 472 aaKnown RBP9.71□□□□□ -0.86
SCN1A-207ENST00000507401 CYP7A1P22680 504 aa9.71□□□□□ -0.86
SCN1A-207ENST00000507401 CAP2P40123 477 aa9.71□□□□□ -0.86
SCN1A-207ENST00000507401 LACTBP83111 547 aaPredicted RBP9.71□□□□□ -0.86
SCN1A-207ENST00000507401 PTGDRQ13258 359 aa9.71□□□□□ -0.86
SCN1A-207ENST00000507401 GPAT2Q6NUI2 795 aa9.71□□□□□ -0.86
SCN1A-207ENST00000507401 PADI6Q6TGC4 694 aa9.71□□□□□ -0.86
SCN1A-207ENST00000507401 ADGRA1Q86SQ6 560 aa9.71□□□□□ -0.86
SCN1A-207ENST00000507401 TGFBRAP1Q8WUH2 860 aa9.71□□□□□ -0.86
SCN1A-207ENST00000507401 ARMC5Q96C12 935 aa9.71□□□□□ -0.86
SCN1A-207ENST00000507401 PARK7Q99497 189 aaKnown RBP9.71□□□□□ -0.86
SCN1A-207ENST00000507401 IL1RAPL2Q9NP60 686 aa9.71□□□□□ -0.86
SCN1A-207ENST00000507401 C20orf194Q5TEA3 1177 aa9.7□□□□□ -0.86
SCN1A-207ENST00000507401 B4GALNT3Q6L9W6 998 aa9.7□□□□□ -0.86
SCN1A-207ENST00000507401 NBPF11Q86T75 865 aa9.7□□□□□ -0.86
SCN1A-207ENST00000507401 MAGEB6Q8N7X4 407 aa9.7□□□□□ -0.86
SCN1A-207ENST00000507401 ZNF280CQ8ND82 737 aa9.7□□□□□ -0.86
SCN1A-207ENST00000507401 WDR18Q9BV38 432 aa9.7□□□□□ -0.86
SCN1A-207ENST00000507401 ANTXR1Q9H6X2 564 aa9.7□□□□□ -0.86
SCN1A-207ENST00000507401 FLT1P17948 1338 aa9.7□□□□□ -0.86
SCN1A-207ENST00000507401 MAST2Q6P0Q8 1798 aa9.7□□□□□ -0.86
SCN1A-207ENST00000507401 MYO5AQ9Y4I1 1855 aaKnown RBP9.7□□□□□ -0.86
SCN1A-207ENST00000507401 USP17L5A8MUK1 530 aa9.69□□□□□ -0.86
SCN1A-207ENST00000507401 HLA-DOAP06340 250 aa9.69□□□□□ -0.86
SCN1A-207ENST00000507401 ASNSP08243 561 aa9.69□□□□□ -0.86
SCN1A-207ENST00000507401 SLURP2P0DP57 97 aa9.69□□□□□ -0.86
SCN1A-207ENST00000507401 ATP5JP18859 108 aa9.69□□□□□ -0.86
SCN1A-207ENST00000507401 HOXD10P28358 340 aa9.69□□□□□ -0.86
SCN1A-207ENST00000507401 SOX10P56693 466 aa9.69□□□□□ -0.86
SCN1A-207ENST00000507401 DYNLL1P63167 89 aaKnown RBP9.69□□□□□ -0.86
SCN1A-207ENST00000507401 CAP1Q01518 475 aa9.69□□□□□ -0.86
SCN1A-207ENST00000507401 SPP2Q13103 211 aa9.69□□□□□ -0.86
SCN1A-207ENST00000507401 SH3D19Q5HYK7 790 aa9.69□□□□□ -0.86
SCN1A-207ENST00000507401 TTC6Q86TZ1 520 aa9.69□□□□□ -0.86
SCN1A-207ENST00000507401 MAPKAPK5Q8IW41 473 aa9.69□□□□□ -0.86
SCN1A-207ENST00000507401 PROCA1Q8NCQ7 364 aaPredicted RBP9.69□□□□□ -0.86
SCN1A-207ENST00000507401 ADGRA2Q96PE1 1338 aa9.69□□□□□ -0.86
SCN1A-207ENST00000507401 AS3MTQ9HBK9 375 aa9.69□□□□□ -0.86
SCN1A-207ENST00000507401 CPA4Q9UI42 421 aa9.69□□□□□ -0.86
SCN1A-207ENST00000507401 DOCK1Q14185 1865 aa9.68□□□□□ -0.86
SCN1A-207ENST00000507401 FOCADQ5VW36 1801 aa9.68□□□□□ -0.86
SCN1A-207ENST00000507401 PHIPQ8WWQ0 1821 aa9.68□□□□□ -0.86
SCN1A-207ENST00000507401 TRIM75PA6NK02 468 aa9.68□□□□□ -0.86
SCN1A-207ENST00000507401 FAM196BA6NMK8 535 aa9.68□□□□□ -0.86
SCN1A-207ENST00000507401 C19orf81C9J6K1 198 aa9.68□□□□□ -0.86
SCN1A-207ENST00000507401 APBB1O00213 710 aa9.68□□□□□ -0.86
SCN1A-207ENST00000507401 BCRP11274 1271 aa9.68□□□□□ -0.86
SCN1A-207ENST00000507401 PSMC4P43686 418 aa9.68□□□□□ -0.86
SCN1A-207ENST00000507401 PABPC4Q13310 644 aaKnown RBP eCLIP9.68□□□□□ -0.86
SCN1A-207ENST00000507401 SLC9C2Q5TAH2 1124 aa9.68□□□□□ -0.86
SCN1A-207ENST00000507401 TATDN1Q6P1N9 297 aa9.68□□□□□ -0.86
SCN1A-207ENST00000507401 GADL1Q6ZQY3 521 aa9.68□□□□□ -0.86
SCN1A-207ENST00000507401 NUDT18Q6ZVK8 323 aa9.68□□□□□ -0.86
SCN1A-207ENST00000507401 CRACR2BQ8N4Y2 399 aaPredicted RBP9.68□□□□□ -0.86
SCN1A-207ENST00000507401 RIOK1Q9BRS2 568 aaKnown RBP9.68□□□□□ -0.86
SCN1A-207ENST00000507401 TRIM34Q9BYJ4 488 aa9.68□□□□□ -0.86
SCN1A-207ENST00000507401 LRRCC1Q9C099 1032 aa9.68□□□□□ -0.86
SCN1A-207ENST00000507401 EHD4Q9H223 541 aa9.68□□□□□ -0.86
SCN1A-207ENST00000507401 DCTPP1Q9H773 170 aa9.68□□□□□ -0.86
SCN1A-207ENST00000507401 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.68□□□□□ -0.86
SCN1A-207ENST00000507401 PNMA3Q9UL41 463 aa9.68□□□□□ -0.86
SCN1A-207ENST00000507401 PALD1Q9ULE6 856 aa9.68□□□□□ -0.86
SCN1A-207ENST00000507401 AGTPBP1Q9UPW5 1226 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms